BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477804
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05170.1 | Symbols: | Phosphoglycerate mutase family protei... 1840 0.0
> AT3G05170.1 | Symbols: | Phosphoglycerate mutase family protein
| chr3:1466573-1468400 FORWARD LENGTH=1297
Length=1297
Score = 1840 bits (996), Expect = 0.0
Identities = 1156/1231 (94%), Gaps = 20/1231 (2%)
Strand=Plus/Plus
Query 1 TTCTATTTGATTCGAATTTCAAATTGCAATTTCTCAGATTCCGGGGAAACaaaaaaaaCC 60
|||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 72 TTCTATTTAATTCGAATTTCAAATTGCCATTTCTCAGATTCCGGGGAAAGAAAAAAAAAC 131
Query 61 CTAGAAAAATTG-TTTCTCCGTTTTTTGAATCATCCATGAGTCCTGACAATAAACTGCTT 119
|||| |||| || |||||||| |||| |||||||||||||||| |||||||||||||||
Sbjct 132 CTAG-AAAAGTGTTTTCTCCG-TTTTCCAATCATCCATGAGTCCGGACAATAAACTGCTT 189
Query 120 CCGAAGCGGATCATCCTCGTACGGCACGGTGAATCGGAAGGGAATCTCGACACGACGGCG 179
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 190 CCGAAGCGGATCATCCTTGTACGGCACGGTGAATCGGAAGGGAATCTCGACACGGCGGCG 249
Query 180 TACACAACGACGCCGGATCATAAGATCCAGTTAACGGATTCCGGTTTGCTTCAGGCGCAG 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TATACAACGACGCCGGATCATAAGATCCAGTTAACGGATTCCGGTTTGCTTCAGGCGCAG 309
Query 240 GAAGCCGGAGCTCGTCTCCACGCTTTGATCTCTTCGAATCCTTCTTCACCGGAGTGGCGT 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 310 GAAGCCGGAGCTCGTCTCCACGCTTTGATCTCTTCTAATCCTTCTTCACCGGAGTGGCGT 369
Query 300 GTGTACTTCTACGTTTCGCCGTACGATCGGACTCGATCTACGCTCCGGGAGATCGGACGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GTGTACTTCTACGTTTCGCCGTACGATCGGACTCGATCTACGCTCCGGGAGATCGGACGG 429
Query 360 TCGTTCTCGCGTCGCCGTGTGATTGGTGTTCGCGAAGAATGTCGAATTAGGGAACAGGAT 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 430 TCGTTCTCGCGTCGCCGTGTGATTGGTGTTCGCGAAGAATGTCGGATTAGGGAACAGGAT 489
Query 420 TTTGGGAATTTCCAGGTTAAAGAGCGAATGAGAGCAACGAAGAAGGTGAGAGAGAGGTTT 479
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 490 TTTGGGAATTTTCAGGTTAAAGAGCGAATGAGAGCAACGAAAAAGGTCAGAGAGAGATTT 549
Query 480 GGCCGCTTTTTCTACCGGTTCCCGGAGGGAGAATCCGCCGCCGACGTCTTCGATCGCGTC 539
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 550 GGCCGCTTTTTTTACCGGTTCCCGGAGGGAGAATCCGCCGCCGATGTCTTCGATCGCGTC 609
Query 540 TCCAGTTTTCTCGAGTCTCTATGGAGAGACATCGACATGAACAGACTACACATCAACCCG 599
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 610 TCCAGTTTTCTCGAGTCTCTATGGAGAGACATTGACATGAACAGACTGCACATCAACCCG 669
Query 600 TCTCATGAGCTAAACTTTGTGATTGTCTCACACGGCTTAACATCGCGTGTCTTTCTGATG 659
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 670 TCTCATGAGCTAAACTTTGTGATTGTCTCACATGGCTTAACATCGCGTGTGTTTCTGATG 729
Query 660 AAATGGTTCAAGTGGACTGTGGAACAGTTCGAGGGACTAAACAATCCAGGGAACAGTGAG 719
|||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 AAATGGTTTAAGTGGTCAGTGGAACAGTTCGAGGGACTAAACAATCCAGGGAACAGTGAG 789
Query 720 ATCAGAGTAATGGAATTAGGACAAGGCGGTGATTACAGCTTGGCGATTCATCACACGGAG 779
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 790 ATCAGAGTGATGGAATTAGGACAAGGCGGTGATTACAGCTTGGCGATTCATCACACAGAG 849
Query 780 GAAGAGTTATCGACATGGGGGCTTTCACCAGAGATGATTGCAGATCAAAAGTGGCGGGTT 839
||||||||| | |||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 850 GAAGAGTTAGCCACATGGGGACTGTCACCAGAGATGATTGCAGATCAAAAGTGGCGGGCT 909
Query 840 AACGCACATAAAGGCGAATGGAAAGAAGATTGTAAGTGGTATTTTGGTGATTTCTTCGAT 899
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 AACGCGCATAAAGGCGAATGGAAAGAAGATTGTAAGTGGTATTTTGGTGATTTCTTCGAC 969
Query 900 CATATGGCAGATTCGGATAGAGAGTATGAGACTGAGGCCAATgaagaaaaagaagaagaa 959
|||||||||||||| |||| ||||| ||||||||||||| |||||| | || ||||||
Sbjct 970 CATATGGCAGATTCCGATAAAGAGTGCGAGACTGAGGCCACTGAAGATA--GA-GAAGAA 1026
Query 960 gaagaagaagaagaagaagaagaGGGAAAAAGGGTAAATCTGCTAACAAGTTCAGAATAT 1019
|||||||||||||| | | | | |||| |||||||||||||||| ||||||||||||
Sbjct 1027 GAAGAAGAAGAAGA-G--G--G-G--AAAA-GGGTAAATCTGCTAACGAGTTCAGAATAT 1077
Query 1020 AGCAATGAGCCAGAGTTATACAATGGAAAATGCTGCTGATAATTTTTTACAGAACAAAAG 1079
||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 1078 AGCAATGAGCCAGAGTTATACAATGGACAATGCTGCTGATACTATTTTACAGAACAAAAG 1137
Query 1080 CATACATGAGAAGAAAAGTTTAACTAAAGAAATTCAGAAAAATGTGATTTTGATAATAAC 1139
|||||||||||||||| |||||||||||||| ||||||| | | |||||||||||| |||
Sbjct 1138 CATACATGAGAAGAAACGTTTAACTAAAGAA-TTCAGAAGATT-TGATTTTGATAAAAAC 1195
Query 1140 TTGTACCG-TTTACTTATGAAGCTTTCTGGTTTCTTAGTTTGTGTAGCTTTTGGTTTGTG 1198
||||||| |||||| || |||||||||||| ||||||||||| |||||||||||||||
Sbjct 1196 TTGTACCAATTTACTGATTAAGCTTTCTGGTGTCTTAGTTTGT--AGCTTTTGGTTTGTG 1253
Query 1199 GAGAAGTGTTGTACACATTGTTATAACACCA 1229
|| ||||||||||||||| ||||||||||||
Sbjct 1254 GAAAAGTGTTGTACACATCGTTATAACACCA 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60391255635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5