BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477807
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05200.1 | Symbols: ATL6 | RING/U-box superfamily protein | ... 2141 0.0
> AT3G05200.1 | Symbols: ATL6 | RING/U-box superfamily protein
| chr3:1476982-1478730 FORWARD LENGTH=1749
Length=1749
Score = 2141 bits (1159), Expect = 0.0
Identities = 1352/1441 (94%), Gaps = 29/1441 (2%)
Strand=Plus/Plus
Query 245 TATCTCTTC-TTCTGAATCTTCAAATGTCTTTTTTAGTACGCTATAAACTCGCTTTCTTC 303
||||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 295 TATCTCTTCTTTATGAATCTTCAAATGTCTTTTTT--TACGCTATAAACTCACTTTCTTC 352
Query 304 TTCTCCAAGAGCCaaaaaaacac-caaaaaaaaa---aaaa-CATGAGAAGCTCCGATCA 358
| |||||||||||||| |||||| |||||||||| |||| ||||||||||||||||||
Sbjct 353 TCCTCCAAGAGCCAAATAAACACACAAAAAAAAACTCAAAATCATGAGAAGCTCCGATCA 412
Query 359 TACGCCGTTTTCCGGCGTTTTGCCGATTGTTTTATTTCTTATATTATCATCAGCGGATCT 418
|| | ||||| |||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 413 TATGGCGTTTGCCGGCGTTTTGCCGATTGTTTTCTTGCTTATATTATCATCAGCGGATCT 472
Query 419 AGCGGCGAGTCAATCACAGCCCGGTCCAGCAAATCAACCGTATAACTACGGCAGGCTAAG 478
||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 473 AGCAGCGAGTCAATCACAGCCCGGTCCAACAAATCAACCGTATAACTACGGCAGACTAAG 532
Query 479 TCCAGCCATGGCAGTGATCGTCGTGATCCTAATCGCTGCTCTCTTCTTCATGGGCTTCTT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TCCAGCCATGGCAGTGATCGTCGTGATCCTAATCGCTGCTCTCTTCTTCATGGGCTTCTT 592
Query 539 CTCCATCTACTTCCGTCACTGCTCCGGCGTACCAGACGCCGGCGTTTCTCCAGCTGGTGG 598
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 593 CTCTATCTACTTCCGTCACTGCTCAGGCGTACCAGACGCCGGTGTTTCTCCAGCTGGTGG 652
Query 599 TGCTCGATCCAGAGCAACCGTCAACGCGGCGGCGCGTGGTCTCGACGCTTCAGTTGTCGA 658
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 653 AGCTAGATCCAGAGCAACCGTCAACGCGGCGGCGCGTGGTCTCGACGTTTCAGTTGTCGA 712
Query 659 GACTTTTCCTACGTTCTTGTACTCTGATGTCAAAACGCAGAAGCTTGGCAAAGGAGAGTT 718
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 713 GACTTTTCCTACGTTCTTGTACTCAGATGTGAAAACGCAGAAGCTTGGTAAAGGAGAGTT 772
Query 719 AGAGTGTGCGATTTGTTTGAACGAGTTCGAAGACGACGAAACGCTGCGTTTGCTTCCCAA 778
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 AGAGTGTGCGATATGTTTGAACGAGTTCGAAGACGACGAAACGCTGCGTTTGCTTCCCAA 832
Query 779 GTGCGATCACGTGTTTCACCCTCACTGCATCGATGCTTGGCTCGAGGCTCACGTGACTTG 838
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 833 GTGTGATCACGTGTTTCATCCGCACTGCATCGATGCTTGGCTCGAGGCTCACGTGACTTG 892
Query 839 TCCTGTTTGCAGAGCGAATCTTGCTGAACAGGTTGCTGAAGGTGAATCGGTTGAACCGGG 898
||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 893 TCCCGTTTGCAGAGCGAATCTTGCTGAACAGGTAGCTGAAGGTGAGTCAGTTGAACCGGG 952
Query 899 AGGAACTGAACCGGATCTTGAATTGCAGCAGGTTGTGGTGAATCCTGAACCGGTTATTAC 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 953 AGGAACTGAACCGGATCTTGAATTGCAGCAGGTTGTGGTGAATCCTGAACCGGTGGTTAC 1012
Query 959 TGCTCCGGTACCGGAACAATTGGTGACGAGTGAAATCGATTCGAGGAGATTACCTGGAGT 1018
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 1013 TGCACCGGTACCGGAACAATTGGTGACTAGTGAAGTCGATTCGAGGAGATTACCTGGTGT 1072
Query 1019 ACCGATGGAT-TTAAAACGAGTCAAATTCTCGAGATCGCATACCACCGGACATTCGGTGG 1077
|||| ||||| |||||| |||| |||||||||||||||||||| || |||||||||||||
Sbjct 1073 ACCGGTGGATCTTAAAA-GAGTTAAATTCTCGAGATCGCATACGACGGGACATTCGGTGG 1131
Query 1078 TTCAACCGGGAGAATGTCCCGAACGGTTTACTCTTCGGTTACCGGAAGATGTAAGGAAGA 1137
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1132 TTCAACCGGGAGAATGTACCGAACGGTTTACTCTTCGGTTACCGGAAGATGTGAGGAAGA 1191
Query 1138 GGATAATGAGGGAATGGAAATTGAACCGGACGAATAGTCTTCTGGTTCTTCCTAGAGGAG 1197
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GGATAATGAAGGATTGGAAATTGAACCGGACGAATAGTCTTCTGGTTCTTCCTAGAGGAG 1251
Query 1198 GGAGTTCAAGGAGAGGTAAACCGATTGACCGGTCAAGGGCTCGGTCTGATCGATGGTTGT 1257
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GGAGTTCGAGGAGAGGTAAACCGATTGACCGGTCAAGGGCTCGGTCTGATCGATGGTTGT 1311
Query 1258 TCCGGAAAACGCCTTCGTTTCTGTGGAGGAGTCGTGATGATGGTTCGATTAGGTTAGGTG 1317
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TTCGTAAAACGCCTTCGTTTCTGTGGAGGAGTCGTGATGATGGTTCGATTAGGTTAGGTG 1371
Query 1318 CTACCGGTAGCGTTCGAGCCAACGCTGTACCGAATTCAACCGGTGGTGATTCGGTACGTG 1377
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1372 CTACCGGTAGCGTTCGAGCCAGTGCTGTACCGAATTCAACCGGTAGTGATTCGGTACGTG 1431
Query 1378 CAGGAGACCGGTGGGCTTTTCTAAGAAACGCGTCGTTTTTGTGGAGGAACTCTTCGGTAC 1437
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1432 CAGGAGACCGGTGGGCTTTTCTTAGAAACGCGTCGTTTTTGTGGAGGAACTCTTCGGTAC 1491
Query 1438 ATGTGCCAAGAGGAGGAGTCAATAAAGACGGCGAAGGAACTTCGGTTAAATCGGCCGGTG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1492 ATGTGCCAAGAGGAGGAGTCAATAAAGACGGCGAAGGAACTTCGGTTAAATCGACCGGTG 1551
Query 1498 CAAGTGGCTCAACTAGCGGTTCGATGAGATTACCGGTTTAGTTGACTTTTCTTTTCTCAC 1557
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1552 CAAGTGGCTCAACTAGCGGTTCGGTGAGATTACCGGTTTAGTTGACTTTTCTTTTCTCA- 1610
Query 1558 ATATTTTTCGTTT-TTAT-GTTTGGGATTGTCGATATACAAGCAA-TACATTTTCAATT- 1613
| |||||| ||| || | |||||||||||| |||| | | |||| |||||||||||||
Sbjct 1611 -TCTTTTTCATTTGTTTTTGTTTGGGATTGTTGATAAATACGCAAATACATTTTCAATTT 1669
Query 1614 ---A-TT-------C-TTGTTTTGTTTAAAATT-TCTGTAACGTACATATAAAGTCAGAT 1660
| || | ||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1670 TTTAATTGAATTATCCTTGTTTTGTTTAAAATTCTCTGTAACGTACATATGAAGTCAGAT 1729
Query 1661 C 1661
|
Sbjct 1730 C 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82077891075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5