BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477808
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05210.1 | Symbols: ERCC1, UVR7 | nucleotide repair protein,... 2010 0.0
> AT3G05210.1 | Symbols: ERCC1, UVR7 | nucleotide repair protein,
putative | chr3:1479538-1482042 FORWARD LENGTH=1505
Length=1505
Score = 2010 bits (1088), Expect = 0.0
Identities = 1263/1346 (94%), Gaps = 18/1346 (1%)
Strand=Plus/Plus
Query 1 AAAAAGAGTCCGGGAAAAGAAAAGGGAAGAGTTTTTCAGAGAGATTCGATCACTCATGGC 60
||| ||||||||||||||||||| ||||| | || | ||||||| ||||||||||||
Sbjct 5 AAACAGAGTCCGGGAAAAGAAAA---AAGAG-CTCTC-G-GAGATTCAATCACTCATGGC 58
Query 61 GAACGAAGACGACGACGGTGAGAAATCCAGAAGTCTGCACCAACAGATTGCTAAAAAACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 59 GAACGAAGACGACGACGGTGAGAAATCCAGAAGTCTGCACCAACAGATTGCTAGAAAACC 118
Query 121 CAAAACCCAGATCGTAATTGGTGTGCCATCGTACCAGGAAGTTATAGAAAGCTCACAGAC 180
||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 119 CAAAACCCAGATCGTGATTGGTGTGCCATCGTACCAGGAAGTTTTGGAAAGCTCACAGAC 178
Query 181 GAAGTCCACGCCCCCATCTCTCTTCAAGCCTTCCCAAAGTTTCTCTCAGGCATTCGCTTT 240
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 179 GAAGTCCACGCCTCCATCTCTCTTCAAGCCTTCCCAGAGTTTCTCTCAGGCTTTCGCTTT 238
Query 241 CGTCAAATCGTCCGACGTCTACTCTCCTCCTCCGT-CTTCCTCCGCCGCCTCCTCTTCTT 299
|||||| |||||||||||||||||||||||||| | |||||||||| ||| |||||||||
Sbjct 239 CGTCAAGTCGTCCGACGTCTACTCTCCTCCTCC-TCCTTCCTCCGCAGCCGCCTCTTCTT 297
Query 300 CGCAGCCGCCGGGCGCTTCTCAGGTG--CC-CAGTTCAAGCCAACCGCTTCAAACCGATG 356
| |||||| ||||||||||||||||| || ||||||||||||| ||| |||||| ||||
Sbjct 298 CTCAGCCGTCGGGCGCTTCTCAGGTGCCCCACAGTTCAAGCCAAACGCATCAAACTGATG 357
Query 357 GTGCCTCATCTTCTTCTACTCCTGTAGCTACTGGCTCTTTACCATCAAGCACAACTCAAA 416
| |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 358 GAGCCTCATCTTCTTCTACTCCTGTAGCCACTGGCTCTGTACCATCAAACACAACTCAAA 417
Query 417 CTCGTAACGCAATCCTCGTTAGCCATAGACAGAAAGGAAACCCGCTTCTTAAACATATCA 476
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 ATCGTAACGCTATTCTCGTTAGCCATCGACAGAAAGGAAACCCGCTTCTTAAACATATCA 477
Query 477 GGAATGTGAAATGGGTTTTCTCAGATATCATTCCAGATTACGTGCTTGGTCAAAGCTCTT 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 478 GGAATGTGAAATGGGTTTTCTCAGATATCATTCCAGATTACGTGCTTGGTCAAAACTCTT 537
Query 537 GCGCTTTGTATTTAAGCTTGCGGTATCATCTGCTACATCCGGATTACCTCTATTTCCGCA 596
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 GCGCTTTGTATTTAAGCTTGCGGTATCATCTCCTACATCCGGATTACCTCTATTTCCGCA 597
Query 597 TTAGGGAACTACAAAAGAATTTCAAGCTAAGTGTTGTTCTTTGCCATGTCGACGTGGAAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTAGGGAACTACAAAAGAATTTCAAGCTAAGTGTTGTTCTTTGCCATGTCGACGTGGAAG 657
Query 657 ATACAGTGAAACCGTTGCTTGAAGTCACGAAAACCGCTCTACTTCATGATTGCACTCTAT 716
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 658 ATACGGTGAAACCGTTGCTTGAAGTCACAAAAACCGCTCTACTTCATGATTGCACTCTAT 717
Query 717 TGTGCGCCTGGAGCATGACGGAATGTGCCCGTTATTTGGAAACGATAAAAGTCTATGAAA 776
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGTGTGCCTGGAGCATGACAGAATGTGCCCGTTATTTGGAAACGATAAAAGTCTATGAAA 777
Query 777 ACAAACCCGCAGATCTCATCCAAGGCCAAATGGATACAGATTATCTTTCACGGCTAAACC 836
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 778 ACAAACCTGCAGATCTCATCCAAGGCCAAATGGATACAGATTACCTTTCACGGCTAAACC 837
Query 837 ATTCTCTTACAAGCATTCGACATGTAAACAAGAGCGATGTAGTTACACTTGGTTCTACAT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATTCTCTTACAAGCATTCGACATGTAAACAAGAGCGATGTAGTTACACTTGGTTCTACAT 897
Query 897 TCGGGTCTCTTTCCCATATAATCGATGCATCCATGGAAGATTTAGCACGTTGTCCGGGGA 956
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 898 TCGGGTCTCTTGCTCATATAATCGATGCATCCATGGAAGATTTAGCACGTTGTCCCGGGA 957
Query 957 TTGGCGAACGTAAGGTTAAGCGGTTGTATGATACATTCCACGAGCCTTTCAAGCGTGCAA 1016
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTGGCGAACGTAAGGTGAAGCGGTTGTATGATACATTCCACGAGCCTTTCAAGCGTGCAA 1017
Query 1017 CTTCAAGCTACCCGTCTGTTGTAGAACCAACAATCCCGGAAGCTCCAGTTCAGAAGAATG 1076
|||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 1018 CTTCGAGCTACCCGTCTGTTGTAGAACCACCAATCCCGGAAGCTCCAGTTGAGAAGGATG 1077
Query 1077 TGAGCTCAAAGGAACCTCTTGTAGAAGAGGAGGATTTTGTGGAGGACTCGAGAAAACGCA 1136
||| |||| |||||||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1078 TGAACTCAGAGGAACCTGTTGAAGAAGACGAGGATTTTGTGGAGGACTCGAGAAAACGCA 1137
Query 1137 AGAAGAAGGAGCCCGAG----A-AAA-CTGTGAAGACCGCGCTCTCAGCTGTTTTTGCTC 1190
||||||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||
Sbjct 1138 AGAAGAAGGAGCCCGAGCCCGAGAAAACTGTGAAGACCGCACTCTCTGCTGTTTTTGCTC 1197
Query 1191 GTTACTCTGATAAACTTAGCAAGAAAAAAGAGAAGCAAAAGGAGAAAGATGCAACAACCG 1250
|||||||||||| ||||||||||||||| ||||| || |||||||||||| ||||||| |
Sbjct 1198 GTTACTCTGATAGACTTAGCAAGAAAAAGGAGAAACAGAAGGAGAAAGATACAACAACGG 1257
Query 1251 AGTCAGATACTGAAATCCACCAAGATTAACACAGTTCTGTTCATTGGGCAAGGCCATGGT 1310
||||||| |||||| ||||||| |||||||| ||| ||||| ||||| |||||||||||
Sbjct 1258 CGTCAGATGCTGAAACCCACCAAAATTAACACGGTTTTGTTCCTTGGGTAAGGCCATGGT 1317
Query 1311 GACCACATTCCTAA-ATTGTAACTTA 1335
||||||||||||| |||||||||||
Sbjct 1318 GACCACATTCCTAGGATTGTAACTTA 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67770735750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5