BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477810
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05230.1 | Symbols: | Signal peptidase subunit | chr3:14921... 1155 0.0
AT5G27430.1 | Symbols: | Signal peptidase subunit | chr5:96873... 523 9e-148
> AT3G05230.1 | Symbols: | Signal peptidase subunit | chr3:1492142-1493619
FORWARD LENGTH=833
Length=833
Score = 1155 bits (625), Expect = 0.0
Identities = 761/823 (92%), Gaps = 24/823 (3%)
Strand=Plus/Plus
Query 1 AAAAAGAAACGCTCGtcttcgtcttcttcttcttcttctattgcttcttcCTCCGCACAC 60
||||| |||||||||||||| |||||||||||||||| |||| ||||||||||| |||||
Sbjct 14 AAAAAAAAACGCTCGTCTTCTTCTTCTTCTTCTTCTTATATTACTTCTTCCTCC-CACAC 72
Query 61 AAGACAAATTTTGTAACGAAGACGGGATCGCGATAAGATCCCGGTGATCGAAAAGCCATA 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 73 -AGACAAATTTTGTAACGAAGACGGGATCGCGATAAGATCACGGTGATCGAAAAGCCCTA 131
Query 121 AGAAGTAATCGTAAAGGGAAAGGGACTTAAAGATGCATACTTTTGGTTACAGAGCAAATG 180
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 AGAAGT-ATTTTCAAGGGAAAGGGACTTAAAGATGCATACTTTTGGTTACAGAGCAAATG 190
Query 181 CTCTGCTCACGTTCGCAGTCACTGCGCTTGCATTCATTTGCGCAATCGCTTCTTTCTCGG 240
|||||||||| ||||||||||| || ||||| ||||||||||||||||| || ||||| |
Sbjct 191 CTCTGCTCACTTTCGCAGTCACGGCTCTTGCTTTCATTTGCGCAATCGCGTCCTTCTCAG 250
Query 241 ACAAATTCAGCAACCAAAATCCCTCTGCTGAGATCCAGATACTTAATATTAATCGGTTTA 300
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 251 ACAAATTCAGCAACCAAAATCCTTCTGCTGAGATCCAGATACTTAATATCAATCGGTTTA 310
Query 301 AGAAGCAATCTCATGGCAATGATGAGGTCAGCTTGACATTGGATATATCAGCAGACTTGC 360
|||||||||||||||| || |||||||||||||||||| |||| ||||||||||||||||
Sbjct 311 AGAAGCAATCTCATGGTAACGATGAGGTCAGCTTGACACTGGACATATCAGCAGACTTGC 370
Query 361 AGTCACTATTTACTTGGAACACCAAACAGGTTTTTGTTTTCGTAGCAGCCGAGTATGAAA 420
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 371 AATCACTTTTTACTTGGAACACCAAACAGGTTTTTGTTTTCGTAGCAGCAGAGTATGAAA 430
Query 421 CCCCGAAGAATTCCCTGAATCAGGTTTCTTTATGGGATGCGATTATCCCTGCCAAGGAAC 480
|||| |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 431 CCCCAAAGAATTCCCTGAATCAGGTTTCTCTATGGGATGCCATTATTCCTGCCAAGGAAC 490
Query 481 ATGCCAAATTCCGGATTCAAGTCTCAAACAAGTATCGTTTCATCGATCAGGGACAGAATC 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 491 ATGCCAAATTCCGGATTCAAGTCTCAAACAAGTACCGTTTCATCGATCAGGGACAGAATC 550
Query 541 TTCGGGGAAAAGAATTCAACTTGACATTACACTGGCATGTCATGCCCAAGACCGGGAAGA 600
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TTCGGGGCAAAGACTTCAACTTGACATTACACTGGCATGTCATGCCCAAGACCGGGAAGA 610
Query 601 TGTTTGCTGACAAGATAGTCATGCCTGGTTACAGTTTACCAGATGCATACAGATGATGAA 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 611 TGTTTGCTGACAAGATAGTCTTGCCTGGTTACAGTTTACCAGATGCATACAGATGATGAA 670
Query 661 GATTGAATAAAACATCAAACATAGTCCAAGACTTTTTGTATTTCAGTTTTCTGAAAAGTT 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 671 GATTGAATAAAACATCAAACCTAGTCCAAGACTTTTTGTATTTCAGTTTTCTGAAAAGTT 730
Query 721 TTA-A---------A----A-------CTAATTCAAAAGTATTATTGTTCTCTTGGAATC 759
||| | | | |||||||||||||| |||||||||||| |||||
Sbjct 731 TTAGACTTTCTTTTATTCCAAAGAAAACTAATTCAAAAGTACTATTGTTCTCTTAGAATC 790
Query 760 AAACAAAACAATTCTTTTAAGTGATCTTAATTAGTTGTTAATG 802
||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 791 AAACAAAACTATTCTTTTTAGTGATCTTAATTAGTTGTTAATG 833
> AT5G27430.1 | Symbols: | Signal peptidase subunit | chr5:9687378-9689420
FORWARD LENGTH=831
Length=831
Score = 523 bits (283), Expect = 9e-148
Identities = 439/513 (86%), Gaps = 16/513 (3%)
Strand=Plus/Plus
Query 152 GATGCATACTTTTGGTTACAGAGCAAATGCTCTGCTCACGTTCGCAGTCACTG-CGCTTG 210
||||||| |||||||||||||||| |||||||| ||||| ||||| ||||| | || |
Sbjct 92 GATGCATTCTTTTGGTTACAGAGCGAATGCTCTACTCACATTCGCCGTCAC-GATTCTAG 150
Query 211 CATTCATTTGCGCAATCGCTTCTTTCTCGGACAAATTCAGCAACCAAAATCCCTCTGCTG 270
| ||||||||||| || ||||| ||||| || || ||||| ||||||||||||||||||
Sbjct 151 CTTTCATTTGCGCGATTGCTTCCTTCTCTGATAACTTCAGTAACCAAAATCCCTCTGCTC 210
Query 271 AGATCCAGATACTT-AATATTAATCGGTTTAAGAAGCAATCTCATGGCAATGATGAGGTC 329
||||||||||| || ||||| ||| ||||| |||||||| ||||||| ||||||||||||
Sbjct 211 AGATCCAGATA-TTGAATATCAATTGGTTTCAGAAGCAACCTCATGGAAATGATGAGGTC 269
Query 330 AGCTTGACATTGGATATATCAGCAGACTTGCAGTCACTATTTACTTGGAACACCAAA-CA 388
||||||||| || | ||| |||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 270 AGCTTGACACTGAACATAACAGCTGACTTGCAGTCACTATTTACTTGGAACAC-AAAGCA 328
Query 389 GGTTTTTG-TTTTCGTAGCAGCCGAGTATGAAACC-CCGAAGAATTCCCTGAATCAGGTT 446
||| |||| |||| |||||||| |||||||||||| || ||||| ||||||||||||||
Sbjct 329 GGTATTTGCTTTT-GTAGCAGCAGAGTATGAAACCTCC-AAGAACGCCCTGAATCAGGTT 386
Query 447 TCTTTATGGGATGCGATTATCCCTGCCAAGGAACATGCCAAATTCCGGATTCAAGTCTCA 506
|| |||||||||| || || || | || || |||||||||||| |||| ||| |||||
Sbjct 387 TCACTATGGGATGCCATAATACCAGAGAAAGAGCATGCCAAATTCTGGATACAAATCTCA 446
Query 507 AACAAGTATCGTTTCATCGATCAGGGACAGAATCTTCG-GGGAAAAGAATTCAACTTGAC 565
|||||||| |||||||| ||||||||||| || || || ||||| || || ||||||||
Sbjct 447 AACAAGTACCGTTTCATAGATCAGGGACATAACCTCCGAGGGAAG-GACTTTAACTTGAC 505
Query 566 ATTACACTGGCATGTCATGCCCAAGACCGGGAAGATGTTTGCTGACAAGATAGTCATGCC 625
||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||| |
Sbjct 506 ATTGCACTGGCATGTCATGCCCAAGACAGGCAAGATGTTTGCTGACAAAATAGTTATGTC 565
Query 626 TGGTTA-CAGTTTACC-AGATGCATACAGATGA 656
|||||| | ||||||| | ||||||||||||||
Sbjct 566 TGGTTATC-GTTTACCTA-ATGCATACAGATGA 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5