BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477812
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05250.1 | Symbols: | RING/U-box superfamily protein | chr3... 1382 0.0
> AT3G05250.1 | Symbols: | RING/U-box superfamily protein | chr3:1495597-1497469
FORWARD LENGTH=957
Length=957
Score = 1382 bits (748), Expect = 0.0
Identities = 869/925 (94%), Gaps = 17/925 (2%)
Strand=Plus/Plus
Query 1 TGAGTTGGTATGGCGGCGAAGGAGATCGCCGGCGGGAGCGGTTCTATTGACGACGGATCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 30 TGAGTTGGTATGGCGGCGAAGGAGATCGCCGGCGGGAGCGGTTCTATTGACGATGGATCC 89
Query 61 GATACTGATCCATGTCCTATTTGCCTTGGACCATTCCTCCGTGATTCCTACCTTGATACC 120
||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 90 GATTTTGATCCATGTCCTATTTGCCTTGGACAATTCCTCCGTGAATCCTACCTTGATACC 149
Query 121 TGTTTCCACAAGTTTTGTTTCAGTTGTATCAAACAATGGATCAAAGTTGTTTCAAGCAAG 180
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 150 TGTTTCCACAAGTTTTGTTTCAATTGTATAAAACAATGGATCAAAGTTGTTTCAAGCAAG 209
Query 181 GCCTCTAAGCAACTTTCCTCAGTGAAATGTCCTCTCTGTAAGACAGAGAATTTCTCCATC 240
||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 210 GCCTCTAAGCAACGTTCCTCAGTGACATGTCCTCTCTGTAAGACAGAGAATTTATCCATC 269
Query 241 ATCCACAACTACGATGGGTGTTCTTTTGACCGGCATTATATCAACCGGAATATTCCAGAT 300
||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||
Sbjct 270 ATCCACAACTACGATGGATGTTCTTTTGAGCGGCATTATATCGACCCGAATATTCCAGAT 329
Query 301 GGTTTTGTATTAACAAAAGAACAGAGATACAGGTTGCAGTGTTACTACACCGAATCAGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 GGTTTTGTATTAACAAAAGAACAGAGATACAGGTTGCAGTGTTACTACACCGAATCAGGT 389
Query 361 TTCTTGGCTGATGTATTTGATGTTTCACGGTTTTGGAAGCTGCAAAAGTTTCTCCAGCCA 420
||| | || |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 390 TTCCTCGCCGATGTATTCGATGTTGCACGGTTTTGGAAGCTGCAAAAGTTTCTCCAGCCG 449
Query 421 AACCGGTGCCTTGAAGCCTGGTTGAGGAGGGAGCTTCAAGCTCTAATGCAGGAGGAAGAT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 450 AACCGGTGCCTTGAAGCCTGGTTGAGGAGGGAGCTTCAAGCTCTGATGCAGGAGGAAGAT 509
Query 481 GTTGATATAGTTATGCATCATTTAGTCGGTGTGATGGATTCCTTCTGCAAAAGAATCAAA 540
|||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 510 GTTGATATTGTTCTGCATCATTTGGTCGGTGTGATGGAATCCTTCTGCAAAAGAATCAAA 569
Query 541 CAGAGACGCAAACTAGAAGCAAGAAGTGCAGAGACAACAAATCAAGAACAATTCAAAGCA 600
||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 570 CAGAGACGCAAACAAGAAACAAGAAGCGCAGAGACAACAAATCAAGAACAATTCAAAGCA 629
Query 601 GCTGTCTCAGAAGCAGCACGTCCATTTGTAATGGCGAGAACAGACCGGTTTGTGGATGAG 660
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 630 GTTGTCTCAGAAGCAGCACGTCCATTTGTAATGGCGAGAACAGACCGATTTGTGGATGAA 689
Query 661 CTTGAACTCTTCCTAGCAGCGGGACTGAACTTGGAGGCTTATGATGCAATCTATAAGCAG 720
||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||
Sbjct 690 CTTGAACTCTTTCTGGCCGCGGGACTAAACTTGGAGGCTTATGATGCAATCTATAAGCAG 749
Query 721 -----A-A------C--C-GAAGAGAGATCGGTGCAGCTAGTGAAGAAAGAGAAGAAGTG 765
| | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GGTTTAGAGGGGAACAACCGAAGAGAGATCGGTGCAGCTAGTGAAGAAAGAGAAGAAGTG 809
Query 766 GAAGAACATAATGTAAGAACAAGAGTTACTCCTTATTTGTTTATCTTCGAGGAAGACTCA 825
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 810 GAAGAACATAATGTAAGAACACGAGTGACTCCTTATTTGTTTATCTTCGAGGAAGACTCA 869
Query 826 GACTGAGACAAAACACTTATCACTTCTGTACCATATAAAGAAACTC-TAAACTTCGATTA 884
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 870 GACTGAGACAAAACACTTATCACTTCTGTACCATATAAAGAAACTCATAA-CTTCGATTA 928
Query 885 ATAATATACAAGTTTCGATTTGTTT 909
|| |||||| |||||||||||||||
Sbjct 929 ATGATATACCAGTTTCGATTTGTTT 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5