BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477813
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05260.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1408 0.0
> AT3G05260.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:1497483-1499004 REVERSE LENGTH=1137
Length=1137
Score = 1408 bits (762), Expect = 0.0
Identities = 872/925 (94%), Gaps = 8/925 (1%)
Strand=Plus/Plus
Query 1 AAATTTTTGAGTACTGTGAAAGGAGAAA-AGAAAAATGGCGAGTGGGTTTCCACCGCAGA 59
||||||| || |||| |||||||| ||| || |||||||| ||||||||||| |||||||
Sbjct 52 AAATTTTCGAATACTCTGAAAGGA-AAATAGGAAAATGGCAAGTGGGTTTCCGCCGCAGA 110
Query 60 AGCAAGAAACACAACCAGGGATACAACATGTCATGGAACCAACACCCGAGTTCTCTAGCT 119
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 111 AGCAAGAGACACAACCAGGGATACAACATGTCATGGAACCAACTCCCGAGTTCTCTAGTT 170
Query 120 CTAACTACAAACCTTCCAACAAACTTCATGGAAAAGTGGCGCTCGTGACAGGAGGAGACT 179
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 171 CTAACTATAAACCTTCCAACAAACTTCATGGAAAAGTGGCACTCGTGACAGGAGGAGACT 230
Query 180 CAGGAATAGGTAAAGCAGTGTGTCACTGCTACGCACTTGAAGGAGCGAGCGTGGCTTTCA 239
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 231 CAGGGATAGGTAAAGCAGTGTGTCACTGCTATGCACTTGAAGGAGCGAGCGTGGCTTTCA 290
Query 240 CGTACGTGAAAGGTCGGGAGGACAAAGATGCAGACGAAACGCTGCGTTTGCTTCATGAGG 299
||||||| |||||| | ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 291 CGTACGTTAAAGGTAGAGAGGACAAAGACGCAGAAGAAACGCTGCGTTTGCTTCACGAGG 350
Query 300 TTAAAACAAGGGAAGCTAAAGAGCCGATCATGATCGCTACTGATTTAGGGTTTGAAGAGA 359
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TTAAGACAAGGGAAGCTAAAGAGCCGATCATGATCGCTACTGATTTAGGGTTTGAAGAGA 410
Query 360 ATTGCAAGAGGGTCGTTGAGGAAGTGGTGAATTCCTTTGGACGCATCGATGTGCTTGTGA 419
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 411 ATTGCAAGAGGGTCGTTGAGGAAGTTGTGAACTCCTTTGGACGCATCGATGTGCTTGTGA 470
Query 420 ATTGTGCAGCTGAGCAGCATGAGGTTTCCATTGAGGATATCGATGAGGCTAGGCTTGAGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ATTGTGCAGCTGAGCAGCATGAGGTTTCCATTGAGGATATCGATGAGGCTAGGCTTGAGA 530
Query 480 GAGTGTTTCGTACCAACATCTTCTCGCAGTTTTTCTTGGTTAATTATAGGTACGCGTTGA 539
||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||| |
Sbjct 531 GAGTGTTCCGTACCAACATCTTCTCGCAGTTTTTCTTGGTTAA--ATA--T--GCGTTAA 584
Query 540 AGCACATGAAGGAAGGGAGTAGTATCATCAATACGACGTCGGTTGTTGCATACGCAGGAC 599
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 585 AGCACATGAAGGAAGGGAGCAGCATCATCAATACGACGTCGGTTGTTGCATACGCAGGAA 644
Query 600 ACTCAAGCTTACTAGAGTACACAGCTACAAAAGGAGCCATTGTTTCCTTCACTCGTGGCT 659
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |
Sbjct 645 ACTCAAGCTTACTAGAGTACACAGCTACGAAAGGAGCCATCGTTTCTTTCACACGTGGGT 704
Query 660 TAGCTCTGCAGCTTGCACCAAAGGGTATACGCGTGAACGGTGTCGCTCCTGGTCCGGTCT 719
||||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 705 TAGCTCTTCAGCTTGCACCAAAGGGCATTCGTGTGAACGGTGTCGCTCCTGGTCCGGTCT 764
Query 720 GGACTCCACTGATAACCGCATCGTTCTCTGAAGAAGCGATCAAGCAGTTTGGGTCAGAGA 779
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 765 GGACTCCACTGATACCCGCATCGTTCTCTGAAGAAGCGATCAAACAGTTTGGGTCAGAGA 824
Query 780 CACCGATGAAAAGAGCGGCTCAGCCTGTGGAAGTGGCTCCTTCTTACGTCTTCTTGGCTT 839
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 825 CACCGATGAAAAGAGCGGCTCAGCCTGTGGAAGTGGCTCCTTCCTACGTTTTCTTGGCTT 884
Query 840 GTAACCATTGCTCTTCTTACTATACCGGCCAAATCCTTCATCCAAACGGTGGTCTTATCG 899
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 885 GTAACCATTGCTCATCTTACTACACCGGCCAAATCCTCCATCCAAACGGTGGTCTTATCG 944
Query 900 TGAACGCTTGAGATTGGAATAAGTG 924
|||||||||||| ||| ||||||||
Sbjct 945 TGAACGCTTGAGCTTGCAATAAGTG 969
Score = 86.1 bits (46), Expect = 6e-16
Identities = 60/66 (91%), Gaps = 3/66 (5%)
Strand=Plus/Plus
Query 925 GGAAGTTCTTACAAAGAGAGTATATCCAGTATTATTATAGTTGTGTGATGTAATAAGGTG 984
||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 992 GGAAGTTCTTACAAAGAGAGTATATCCAG---TAGTATAGTCGTGTGATGTAATAAGGTG 1048
Query 985 ACATGT 990
| ||||
Sbjct 1049 ATATGT 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5