BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477816
Length=1058
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05280.1 | Symbols: | Integral membrane Yip1 family protein... 1585 0.0
> AT3G05280.1 | Symbols: | Integral membrane Yip1 family protein
| chr3:1503758-1505654 REVERSE LENGTH=1180
Length=1180
Score = 1585 bits (858), Expect = 0.0
Identities = 1008/1076 (94%), Gaps = 28/1076 (3%)
Strand=Plus/Plus
Query 1 ATCGGAACAAGATGATGTCCGGCGGGAACTACACGACTATCGACAGCCAGAAAGTCTCTG 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 90 ATCGGAACAAGATGATGTCCGGCGGGAACTACACGACTATAGACAGCCAGAAAGTCTCTG 149
Query 61 GATCTGTTCCTCCTGTTCCAGATCCAGGCCATACCACCGTCAAATTCACAGAATCAAATC 120
||||||| ||| ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 150 GATCTGTACCTTCTGTTCCAGATCCAGGCCATACCACCGTCAAATTCGCAGAGTCAAATC 209
Query 121 TACAAACTTTTCCTCCATCTGCTACTCAGGGCAAGATCTCTGGTGGTAGTAATCCCCCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TACAAACTTTTCCTCCATCTGCTACTCAGGGCAAGATCTCTGGTGGTAGTAATCCCCCTC 269
Query 181 GAGATGCTGATGATACATTTTCTGGGCATGGTAATGGTAGTTCAGATGAACCTCAGTCTG 240
| |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 270 GTGATGCTGACGATTCATTTTCTGGGCATGGTAATGGTAGTACAGATGAACCTCAGTCTG 329
Query 241 GTGGCTGGCTTCATAAATTCACTGTTGGTGCTTACAAGCCCTTCTTTGATGTTGACACTT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 330 GTGGCTGGCTTCATAAATTCACTGTTGGTGCTTACAAGCCCTTCTTTGATGTCGACACTT 389
Query 301 CGGATGTTGTAGAGAGACTCAAGGAATCTCTTTTCCCATTCCGTGGAACATTTACAGAGA 360
| ||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 390 CCGATGTAGTTGAGAGACTCAAAGAATCCCTTTTCCCATTCCGTGGAACATTTACAGAGA 449
Query 361 AGACAGCTGATAAACCTGACTTGTATGGTCCATTCTGGATCTGCACCACCTTGATATTCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 AGACAGCTGATAAACCTGACTTGTATGGTCCATTCTGGATCTGCACCACCTTGATATTCG 509
Query 421 TTGCAGCATCTATCGGCACATTTGTCACATACATAGCACACAAATGGAAGAAACAAGAAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TTGCAGCATCTATCGGCACATTTGTCACATACATAGCACACAAATGGAAGAAACAAGAAT 569
Query 481 GGAACTACGATATCAATCTAGTGACTTGGTCTGCAGGAGTGTTCTACGGATATGTCACAA 540
||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 570 GGAACTACGATATTAATCTAGTGACTTGGTCTGCAGGAGTATTCTATGGCTATGTCACAA 629
Query 541 TTGTTCCTCTAGCATTATATGTCGTTCTCAAATACTTCTCTGCACCATCAGGCCTCGTCC 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 630 TTGTTCCTCTCGCATTATATGTCGTTCTCAAATACTTCTCTGCACCATCAGGCCTAGTCC 689
Query 601 AACTCTTCTGTCTCTATGGCTATTCCCTTTTCGTCTTTATCCCAGCATTGGTACCAAATC 660
||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 690 AACTCTTCTGTCTTTATGGCTATTCCCTTTTCGTCTTTATCCCAGCATTG-TG-----TC 743
Query 661 TCTCGGTTGTCCCAGTGGAGATTTTCAGATGGGTCATCGCGGGTGTAGCCGGGTTCATGT 720
||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 744 TCTCGGTCGTGCCAGTGGAGATTTTCAGATGGGTCATCGCAGGTGTAGCTGGGTTCATGT 803
Query 721 CTGCAACATTTGTGGCTTTGAACCTCAAAGCGCATATCAATTCCGCTGGAGAGAGATCGA 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 CCGCAACATTTGTGGCTTTGAACCTCAAAGCGCATATCAATTCCGCTGGAGAGAGATCGA 863
Query 781 TCCTGATTATCGCCAGCATCTTTCTTTTGCAGCTCGCGCTTGCAGTTGTGCTGAAGCTCT 840
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 864 TCCTGATTATCGCCAGCATCTTTCTTTTGCAGCTCGCTCTTGCAGTTGTGCTAAAGCTCT 923
Query 841 ATATCTTCAATGTCAAAGTTTGATTCATTaaaaaaaaaaCTGAAACTTGATCTTTATAGA 900
||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||
Sbjct 924 ATATCTTCAATGTCAAAGTATGATTCA--AAAAGAAATT-TGAAACTTGATCTTTATAGA 980
Query 901 ACAAAA--GGTAATGATTTCTGATATCTGTAGATGCTATAATG--------------AGT 944
|||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 981 ACAAAAAAGGTAATGAATTCTGATATCTGTAGATGCTATAATGTTTCTTCTCCTCTGAGT 1040
Query 945 TATCCAATTTTGTACCGTTTGGATACTGTTACATTTATTTAC--TCCATGATTTACTTTG 1002
|| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1041 TACCCAATTTTGTACCGTTTGGATACTGTTCCATTTATTTACACTCCATGATTTACTTTG 1100
Query 1003 TAGAAGATAGTGTAATAACAAA-TCGATTTGTAGGTGCTGTGATGTTCAAACTTTC 1057
||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1101 TAGAAAATAGTGTTATAACAAAATCGATTTGTAGCTGCTGTGATGTTCAAACTTTC 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51806962440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5