BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477817
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05290.1 | Symbols: PNC1 | peroxisomal adenine nucleotide ca... 1655 0.0
AT5G27520.1 | Symbols: PNC2 | peroxisomal adenine nucleotide ca... 965 0.0
> AT3G05290.1 | Symbols: PNC1 | peroxisomal adenine nucleotide
carrier 1 | chr3:1505890-1507702 REVERSE LENGTH=1296
Length=1296
Score = 1655 bits (896), Expect = 0.0
Identities = 977/1016 (96%), Gaps = 5/1016 (0%)
Strand=Plus/Plus
Query 1 TCGGAGAGATGGGTGTCGATTTGGAATCGGTGTCGGAAGCGACCTCCGGAGCCATTGGGT 60
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 81 TCGGAGAGATGGGTGTCGATTTGGAATCGGTGTCGGAAGCAACCTCGGGAGCTATTGGGT 140
Query 61 CGCTTCTTAGTACAACGATCTTATATCCTCTTGATACATGTAAATCAAAGTTCCAAGCCG 120
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 141 CGCTTCTGAGTACAACGATCTTGTATCCTCTTGATACATGTAAATCAAAGTTCCAAGCCG 200
Query 121 AGGTTCGAGCTCGAGGTCAGCAAAAATACAGATATCTTTCAGATGTTATGTGGGAAGCAA 180
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 201 AGGTTCGAGCTCGTGGTCAGCAAAAATACAGATATCTTTCCGATGTTATGTGGGAGGCAA 260
Query 181 TTTCTAAAGGACAAGTCTTTTCACTGTATCAAGGCCTTGGAACTAAGAATTTTCAGTCTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TTTCTAAAGGACAAGTCTTTTCACTGTATCAAGGCCTTGGAACTAAGAATTTTCAGTCTT 320
Query 241 TCATTTCTCAGTTCATCTACTTTTATAGCTATAGCTATTTCAAGAGAGTTCATAGTGAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TCATTTCTCAGTTCATCTACTTTTATAGCTATAGCTATTTCAAGAGAGTTCATAGTGAAA 380
Query 301 GGACTGGTTCTAAATCAATTGGAACTAAGGCAAACTTGCTCATTGCTGCTGCTGCTGGGG 360
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 381 GGACTGGTTCTAAATCAATTGGAACTAAGGCTAATTTGCTCATTGCTGCTGCTGCTGGGG 440
Query 361 CTTGTACTTCTGTCTTAATTCAGCCTCTGGATACAGCTTCATCAAGGATGCAAACTAGTG 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 441 CTTGTACTTCTGTCTTAATTCAGCCTCTAGATACAGCTTCATCAAGGATGCAAACTAGTG 500
Query 421 AGTTTGGAGAATCAAAAGGGTTGTGGAAGACCTTAACAGAGGGTACATGGGGAGATGCAT 480
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 501 AGTTTGGAGAATCAAAAGGGTTGTGGAAGACCTTAACAGAGGGTTCATGGGCAGACGCAT 560
Query 481 TTGATGGCCTAGGGATCTCTCTCCTATTGACTTCAAATCCTGCAATTCAGTATACAGTGT 540
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 561 TTGATGGCCTAGGGATCTCTCTTTTATTGACTTCAAATCCTGCAATTCAGTATACAGTGT 620
Query 541 TTGATCAGCTGAAACAGCATCTTCTTAAGCAGAAAAACGCAAAAGCAGAGAATGGTTCTT 600
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 621 TTGATCAGCTGAAACAGCACCTTCTTAAGCAGAAAAATGCAAAAGCCGAGAATGGTTCTT 680
Query 601 CTCCGGTAGTGCTCTCTGCCTTTATGGCGTTTGTGTTAGGTGCGGTCTCCAAAAGTGTTG 660
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 681 CTCCGGTAGTGCTCTCTGCCTTTATGGCGTTTGTCTTAGGTGCGGTCTCCAAAAGTGTTG 740
Query 661 CCACCGTGCTTACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCTGCGGATGACT 720
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 741 CCACCGTGCTCACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCTGCGGATGAGT 800
Query 721 CGAAGGAAAACGAAACAAAGAAGCCCAGAAGAAGATCAAGGAAAACAATTCCAGGGGTTG 780
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 801 CGAAGGAAAACGAAACAAAGAAGCCGAGAAGAAGAACAAGGAAAACAATTCCAGGGGTTG 860
Query 781 TCTATGCCATATGGAGAAAAGAAGGGATGTTAGGGTTCTTTAAGGGCTTACAGGCTCAGA 840
| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 861 TGTATGCCATATGGAGAAAAGAAGGAATGTTAGGGTTCTTTAAGGGCTTGCAGGCTCAAA 920
Query 841 TCTTGAAGACTGTTCT-GAGCTCAGCATTGCTATTGATGATCAAGGAGAAAATCACCGCA 899
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 921 TCTTGAAGACTGT-CTTGAGCTCAGCATTGCTATTGATGATCAAGGAGAAAATCACAGCA 979
Query 900 ACGACATGGATTCTCATTCTAGCTATCCGTAGAACTCTGTTTATCACAAACACAAAGGGT 959
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 980 ACGACATGGATTCTCATTCTAGCTATCCGTAGAACCCTGTTTCTCACAAACACAAAGGGT 1039
Query 960 AAGTTGAA-AAGTCCTT-GAGACTCCCACCACCAAGGTTATTTCACTTCCATGTAA 1013
||||| || |||||||| |||||||||||||||||| ||||||||| ||| |||||
Sbjct 1040 AAGTT-AAGAAGTCCTTAGAGACTCCCACCACCAAGCTTATTTCACGTCCTTGTAA 1094
Score = 137 bits (74), Expect = 2e-31
Identities = 92/100 (92%), Gaps = 4/100 (4%)
Strand=Plus/Plus
Query 1027 GGTGTAATAAAAGTGAGATATCTTTGTGTAGAAGAATCAAAGAAAATGAAT-TAATATGA 1085
|||||||||||||| ||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 1184 GGTGTAATAAAAGTAAGA-ATCTTTGTGTAGAAGAATCAAAGAAAATG-ATGTAATATG- 1240
Query 1086 AACATTTCTTAAGAAACTCAAATTTAAAACATTATGGTAT 1125
||| |||||||||||||||||||||| |||||||| ||||
Sbjct 1241 AACGTTTCTTAAGAAACTCAAATTTATAACATTATTGTAT 1280
> AT5G27520.1 | Symbols: PNC2 | peroxisomal adenine nucleotide
carrier 2 | chr5:9714382-9716354 REVERSE LENGTH=1358
Length=1358
Score = 965 bits (522), Expect = 0.0
Identities = 810/946 (86%), Gaps = 31/946 (3%)
Strand=Plus/Plus
Query 18 GATTTGGAATCGGTGTCGGAAGCGACCTCCGGAGCCATTGGGTCGCTTCTTAGTACAACG 77
||||||||||| | || ||||| ||||||||||||||||| || ||||| || || ||
Sbjct 126 GATTTGGAATCCATCTCCGAAGCCACCTCCGGAGCCATTGGATCTCTTCTCAGCACCACC 185
Query 78 ATCTTATATCCTCTTGATACATGTAAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGAGGT 137
|| ||||| ||||||||||| |||||||| ||||||||||||||| |||| | ||| |||
Sbjct 186 ATTTTATACCCTCTTGATACCTGTAAATCCAAGTTCCAAGCCGAGATTCGTGTTCGCGGT 245
Query 138 CAGCAAAAATACAGATATCTTTCAGATGT-TATGTGGGAAGCAATTTCTA-AAGGACAAG 195
||||| |||||||||||||| |||||||| | | |||||||||||||| | |||| ||
Sbjct 246 CAGCAGAAATACAGATATCTGTCAGATGTGT-TTTGGGAAGCAATTTC-ATCAGGA-AA- 301
Query 196 TCTT-T-TCAC-TGTATCAAGGCCTTGGAACTAAGAATTTTCAGTCTTTCATTTC-TCAG 251
| || | || | |||||||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 302 TGTTCTCTC-CTTGTATCAAGGCCTTGGGACTAAGAATTTGCAGTCTTTTATTTCGTC-C 359
Query 252 TTCATCTACTTT-TATAGCTATAGCTATTTCAAGAGAGTT-CATAGTGAAAGGACTGGTT 309
|||||||| ||| ||||| ||||||||||||||||| ||| ||| |||||| |||||
Sbjct 360 TTCATCTA-TTTCTATAGTTATAGCTATTTCAAGAG-GTTACATTCCCAAAGGATTGGTT 417
Query 310 CTAAATCAATTGGAACTAAGGC-AAACTTGCTCATTGCTGCTGCTGCTGGGGCTTGTACT 368
|||| || |||||||| ||||| || | | |||||||||||||||||||| ||||||||
Sbjct 418 CTAAGTCTATTGGAACAAAGGCTAATC-TCCTCATTGCTGCTGCTGCTGGTGCTTGTACC 476
Query 369 TCTGTCTTAATTCAGCCTCTGGATACAGCTTCATCAAGGATGCAAACTAGTGAGTTTGGA 428
||||| || | ||| ||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct 477 TCTGTTTTGACTCAACCTCTAGATACAGCTTCATCGAGGATGCAAACAAGCGAGTTTGGA 536
Query 429 GAATCAAAAGGGTTGTGGAAGAC-CTTAACAGAGGGTACATGGGGAGATGCATTTGATGG 487
|||| ||||||||||||||||| | ||||||| ||| |||||||| |||||||||||||
Sbjct 537 AAATCTAAAGGGTTGTGGAAGACAC-TAACAGATGGTTCATGGGGAAATGCATTTGATGG 595
Query 488 CCTAGGGATCTCTCTCCTATTGACTTCAAATCCTGCAATTCAGTATACAGTGTTTGATCA 547
||| ||||| ||||| ||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 596 CCTTGGGATTTCTCTTTTATTGACCTCGAATCCAGCAATTCAGTATACAGTGTTTGATCA 655
Query 548 GCTGAAACAGCATCTTCTT-AAGCAGAAAAACGCAAAA-GCAGAGAATGGTTCTTCTCCG 605
|||||||||| | || ||| || || ||| |||||| || | || | |||||| ||
Sbjct 656 GCTGAAACAGAACCTCCTTGAAAAAG-GAAAGGCAAAATCCA-ACAAAGATTCTTCCCCT 713
Query 606 GTAGTGCTCTCTGCCTTTATGGCGTTTGTGTTAGGTGCGGTCTCCAAAAGTGTTGCCACC 665
||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 714 GTAGTTCTCTCTGCCTTTATGGCGTTTGTGTTAGGTGCGGTCTCAAAAAGTGCTGCCACC 773
Query 666 GTGCTT-ACATATCCAGCAATCAGGTGCAAGGTGATGATTCAAGCTGCGGATGACTCGAA 724
|| | | |||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 774 GT-CATCACATATCCAGCAATCAGGTGCAAGGTTATGATTCAAGCAGCAGATGACTCGAA 832
Query 725 GGAAAACGAAACAAAGAAGCCCAGAAGAAGA-TCAAGGAAAACAATTCCAGGGGTTGTCT 783
|||||| ||| | ||||||||| ||| |||| ||| ||||||| ||||| ||||| ||||
Sbjct 833 GGAAAATGAAGCGAAGAAGCCCCGAAAAAGAATCA-GGAAAACGATTCCCGGGGTAGTCT 891
Query 784 ATGCCATATGGAGAAAAGAAGGGATGTTAGGGTTCTTTAAGGGCTTACAGGCTCAGATCT 843
|||| ||||||| |||||||||||| ||||| |||||||| ||||| |||||||||||||
Sbjct 892 ATGCTATATGGAAAAAAGAAGGGATCTTAGGCTTCTTTAAAGGCTTGCAGGCTCAGATCT 951
Query 844 TGAAGACTGTTCTGAGCTCAGCATTGCTATTGATGATCAAGGAGAAAATCACCGCAACGA 903
| ||||| ||||||||||||||||| ||| | |||||||||||||||||||| ||||| |
Sbjct 952 TAAAGACAGTTCTGAGCTCAGCATTACTACTAATGATCAAGGAGAAAATCACTGCAACCA 1011
Query 904 CATGGATTCTCATTCTAGCTATCCGTAGAACTCTGTTTATCACAAA 949
||||||||||||||||||| || |||||||||||| |||||||
Sbjct 1012 CATGGATTCTCATTCTAGCAATA---AGAACTCTGTTTGTCACAAA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5