BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477819 Length=1944 Score E Sequences producing significant alignments: (Bits) Value AT3G05310.1 | Symbols: MIRO3 | MIRO-related GTP-ase 3 | chr3:15... 2916 0.0 > AT3G05310.1 | Symbols: MIRO3 | MIRO-related GTP-ase 3 | chr3:1510160-1513301 FORWARD LENGTH=1947 Length=1947 Score = 2916 bits (1579), Expect = 0.0 Identities = 1832/1954 (94%), Gaps = 17/1954 (1%) Strand=Plus/Plus Query 1 ATGTGGATGGGTGTGGGAGATTATAGTGGCTCGCCAAAACCGATAAGAATTGTTGTGGTT 60 |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGTGGATGGGTGTGGGAGATTCTAGTGGCTCGCCAAAACCGATAAGAATCGTTGTGGTT 60 Query 61 GGTGAGAAGGGCAGTGGAAAATCAAGCTTGATTATGGCTGCAGCAAGAAACACTTTCCAT 120 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GGTGAAAAGGGCAGTGGAAAATCAAGCTTGATTATGGCTGCAGCAAGAAATACTTTCCAT 120 Query 121 CCAAACATCCCTTCTCTGTTACCTTACACCAATTTACCTTCTGAATTCTTCCCTGACCGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCAAACATCCCTTCTCTGTTACCTTACACCAATTTACCTTCTGAATTCTTCCCTGACCGT 180 Query 181 ATACCCGCTACTGTTATCGACACTTCTTCAAGACCGGAAGATAAGGGAAAGGTACTTAAG 240 || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 181 ATTCCCGCTACTGTTATCGACACTTCTTCAAGACCGGAAGACAAGGGAAAGGTAGTTAAG 240 Query 241 GAAGTTAAGCAAGCAGATGCAATTGTTTTAACATTTGCATTCGATAGACCGGAGACTCTT 300 ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 241 GAAGTTAGGCAAGCAGATGCAATTGTTTTGACATTTGCATTTGATAGACCGGAGACTCTT 300 Query 301 GACCGTTTGAGTAAACACTGGCTTCCTCTGTTTCGACAATTAGAGGTGAGAGTTCCTATC 360 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GACCGTTTGAGTAAATACTGGCTTCCTCTGTTTCGACAATTAGAGGTGAGAGTTCCTATC 360 Query 361 ATAGTGGCAGGTTATGAAGTTGACAGCAAAGAGGCTTATAATCAAACCAGCATTGAACAA 420 ||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct 361 ATAGTGGCAGGTTATGAAGTTGATAACAAAGAGGCTTATAATCACTTCAGCATTGAACAA 420 Query 421 ATAACGTCACCTATGATGCAACGATATCGAGAGGTCGAGACATCTATCCAGTGGTCTGCT 480 ||||| ||| || ||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 ATAACATCAGCTCTGATGAAACAATATCGAGAGGTCGAGACATCTATCCAGTGGTCTGCT 480 Query 481 CAGAGGCTAAATCAGGCTACAA-AGGTACTCTACTATGCACAAAAAGCAGTTATTCACCC 539 ||||||||| ||||||||| || | || |||||||||||||||||||| |||||| |||| Sbjct 481 CAGAGGCTAGATCAGGCTA-AAGATGTTCTCTACTATGCACAAAAAGCGGTTATTGACCC 539 Query 540 AGTAGGACCTGTGTTTAATCAAGAAACCAAT-TCACTGAAGCCTCGCTGTATCGCTGCCT 598 |||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||| Sbjct 540 AGTAGGACCTGTGTTTGATCAAGAAAACAATGT-ACTGAAGCCTCGCTGTATCGCTGCCT 598 Query 599 TGAAACGAATCTTTTTACTCTCTGATCATAACGTGGATGGTATTCTCAGTGACGCCGAGT 658 ||||||| ||||| ||||||||||| |||||| ||||||||||||| ||||||| |||| Sbjct 599 TGAAACGTATCTTCTTACTCTCTGACCATAACATGGATGGTATTCTTAGTGACGAGGAGT 658 Query 659 TAAACGAGCTTCAGAAGAAATGCTTCGATACACCATTGGTGCCTTGTGAAATTAACCAAA 718 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 659 TAAACGAGCTTCAGAAAAAATGCTTCGATACACCATTGGTGCCTTGTGAAATTAAACAAA 718 Query 719 TGAAAAAAGCTATGCAAGTCAAGTTTCCACAAGGAGTTAATGAAAGAGGACTCACATTGG 778 ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 719 TGAAAAACGTTATGCAAGTCACGTTTCCACAAGGAGTTAATGAAAGAGGACTCACATTGG 778 Query 779 ATGGTTTCTTGTTTCTAAACACACGTTATA-TCGAAGATGCAAGAATCCAAACACTATGG 837 ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| Sbjct 779 ATGGTTTCTTGTTTCTAAACACACGTT-TAATCGAAGAAGCAAGAATCCAAACACTATGG 837 Query 838 ACTATGCTTAGGAAATTCGGGTACAATAACGATCTAAGACTTGGAGATGATCT-GATTCC 896 |||||||| |||||||||||||| | ||||||||||||||||||||||||||| | |||| Sbjct 838 ACTATGCTCAGGAAATTCGGGTATAGTAACGATCTAAGACTTGGAGATGATCTAG-TTCC 896 Query 897 TTATTCATCATTCAAACGTGAGGCTGATCAGAGTGTTGAGCTAACAAATGTAGCTATTGA 956 |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 897 TTATTCATCATTCAAACGCCAAGCTGATCAGAGTGTTGAGCTAACAAATGTAGCTATTGA 956 Query 957 ATTCTTAAGGGAAGTCTATGAGTTTTTTGATAATGACTGTGACAATAACTTGGAACCTCA 1016 ||||||||||||||||||||||||||| || | | || |||||||||||||||||||||| Sbjct 957 ATTCTTAAGGGAAGTCTATGAGTTTTTCGACAGTAACGGTGACAATAACTTGGAACCTCA 1016 Query 1017 TGAAACGGGATA-CATCTTTGAAACTGCACCTGAAAGTCCTTGGACTGAAGCTCCT-TAT 1074 ||||| |||||| | |||||||||||||||||||||||||||||||| || ||| | ||| Sbjct 1017 TGAAATGGGATATC-TCTTTGAAACTGCACCTGAAAGTCCTTGGACTAAACCTC-TGTAT 1074 Query 1075 AAGGATGTCACAGAGGAAACTAAGGATGGAGGATTATCTCTGGAAGCTTTCCTCTCACTG 1134 |||||||| |||||||||| || |||||||||||||||||| |||||||||||||||||| Sbjct 1075 AAGGATGTTACAGAGGAAAATATGGATGGAGGATTATCTCTTGAAGCTTTCCTCTCACTG 1134 Query 1135 TGGTCATTGATGACACTAATAGATCCAGCTAGGAGTCTTGAATATTTGATGTACATTAGA 1194 |||||||||||||||||||| |||||| |||||||||| |||||| |||||||||||||| Sbjct 1135 TGGTCATTGATGACACTAATTGATCCACCTAGGAGTCTGGAATATCTGATGTACATTAGA 1194 Query 1195 TTCCCAT---ATGATCCATCTTCAGCGATTCGCGTAACTAGGAAGCGAGTTCTAGATCGC 1251 ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1195 TTCCCATCTGATGATCCATCTTCAGCGGTTCGCGTAACTAGGAAGCGAGTTCTTGATCGC 1254 Query 1252 AAGGAGAAGAAATCTGAAAGAAAAGTTGTTCAGTGTTTTGTGTTTGGCCCCAAGAATGCT 1311 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1255 AAGGAGAAGAAATCCGAAAGAAAAGTTGTTCAGTGTTTTGTGTTTGGTCCCAAGAATGCT 1314 Query 1312 GGAAAGTCTGCATTCCTCAATCATTTTATCGGAAGGTCATACGATGATGACAGCAACAAC 1371 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1315 GGAAAGTCTGCATTGCTCAATCAGTTTATCGGAAGGTCATACGATGATGACAGCAACAAC 1374 Query 1372 AACAATGGATCAACAGATGAACGTTATGCTGTAAATATGGTTAAAGAATCTGGAGTGGTT 1431 |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| || Sbjct 1375 AACAATGGATCAACTGATGAACATTATGCTGTAAATATGGTTAAAGAACCTGGAGTGATT 1434 Query 1432 GCAAATACAGATAAAACTCTGGTGCTGAAGGAAATTCGAATTCAAGAAGATGGATTCATG 1491 || |||||||||||||||||||||| |||||| |||||||| |||| |||||||||||| Sbjct 1435 TCAGATACAGATAAAACTCTGGTGCTAAAGGAAGTTCGAATTAAAGATGATGGATTCATG 1494 Query 1492 TTATCAAATA-AAGCATTGGCTGCTTGTGATGTAGCTATCTTCATCTATGATTCTTCTGA 1550 |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1495 TTATCAAA-AGAAGCATTGGCTGCTTGTGATGTAGCAATCTTCATCTATGATTCTTCTGA 1553 Query 1551 TGAGTCCTCGTGGAACAGAGCCATTGACTTGCTTGCTGAGGTCGCAACCATTGGCAAAGA 1610 ||||| |||||||||||||||| ||||| ||||||||||||| |||||||||| |||||| Sbjct 1554 TGAGTACTCGTGGAACAGAGCCGTTGACATGCTTGCTGAGGTTGCAACCATTGCCAAAGA 1613 Query 1611 TGCTGGTTATGTGTTTCCCTGCTTAATGGTTGCAGCAAAAACTGATCTTGATCCATTCCC 1670 | | ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1614 TTCCGGTTACGTGTTTCCCTGCTTAATGGTCGCAGCAAAAACTGATCTCGATCCATTCCC 1673 Query 1671 AATGGCGATTCAAGAATCAACTAGAGTTACACAAGATATAGGGATTGATGCTCCAATACC 1730 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1674 AGTGGCAATTCAAGAATCAACTAGAGTTACACAAGATATAGGGATTGATGCTCCAATACC 1733 Query 1731 AATCAGCTCTAAACTGGGAGATTTCGGTAACTTATTTCGAAAGATCTTAACCGCGGCAGA 1790 ||||||||||||| |||||||| || ||||||| ||||| |||||||||||||||||||| Sbjct 1734 AATCAGCTCTAAATTGGGAGATGTCAGTAACTTGTTTCGGAAGATCTTAACCGCGGCAGA 1793 Query 1791 GCATCCTCATTTGAATATTCCAGCGATAGAGTCAAAGAAGAAAAGGAGTTGCAAGCTAAT 1850 | |||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1794 GAATCCCCATTTGAATATTCCAGAGATTGAGTCAAAGAAGAAAAGGAGTTGCAAGCTAAA 1853 Query 1851 CAACAGATCTCTAATGGCGGTTTCAATCGGGACAGCGGCTTTGATCGCCGGGCTGGCTTC 1910 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1854 CAACAGATCTCTAATGGCGGTTTCAATCGGGACAGCGGTTTTGATCGCCGGGCTGGCTTC 1913 Query 1911 ATTCCGTCTCTACACCGCAAGAAAGCTGAGTTAA 1944 ||||||||||||||||||||||||| ||||||| Sbjct 1914 TTTCCGTCTCTACACCGCAAGAAAGCAGAGTTAA 1947 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96284645310 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5