BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477824
Length=2525
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05360.1 | Symbols: AtRLP30, RLP30 | receptor like protein 3... 3916 0.0
AT3G05370.1 | Symbols: AtRLP31, RLP31 | receptor like protein 3... 429 6e-119
AT2G24165.1 | Symbols: | pseudogene, similar to HcrVf3 protein... 320 4e-86
AT2G24160.1 | Symbols: | pseudogene, leucine rich repeat prote... 292 8e-78
AT1G71400.1 | Symbols: AtRLP12, RLP12 | receptor like protein 1... 67.6 6e-10
> AT3G05360.1 | Symbols: AtRLP30, RLP30 | receptor like protein
30 | chr3:1530735-1533288 REVERSE LENGTH=2554
Length=2554
Score = 3916 bits (2120), Expect = 0.0
Identities = 2396/2531 (95%), Gaps = 11/2531 (0%)
Strand=Plus/Plus
Query 1 ATGATTCCAAGCCAATCTTGTTCCTTTTTTGGTAGTGTTGTTACCTTTTATTTCTTCCTC 60
|||||||||||||||||| |||||||| |||||||||| ||||||| ||||||||||||
Sbjct 29 ATGATTCCAAGCCAATCTAATTCCTTTTCTGGTAGTGTTATTACCTTGTATTTCTTCCTC 88
Query 61 TTGGGTTCCCTTGTTCTACGCACTCTTGCTTCTTCTAGGCTTCACTATTGCCGCCATGAC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 CTGGGTTCCCTTGTTCTACGCACTCTTGCTTCTTCTAGGCTTCACTATTGCCGCCATGAC 148
Query 121 CAAAGGGATGCTCTTCTCGAGTTCAAACACGAGTTTCCAGTAACTGAATCAAAGCGAAGT 180
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||| ||||
Sbjct 149 CAAAGGGATGCTCTTCTCGAGTTCAAACACGAGTTTCCGGTAAGTGAATCGAAGCCAAGT 208
Query 181 CCGTCGTTAAGTTCATGGAACAAGAGTAGTGATTGCTGTTTTTGGGAGGGTGTCACGTGT 240
|| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 209 CCATCGTTGAGTTCATGGAACAAGACTAGTGATTGCTGTTTTTGGGAGGGTGTCACGTGC 268
Query 241 GATGCT-AAGTCTGGCGATGTGATTTCACTTGATCTTAGTTATGTCGTTCTCAACAACTC 299
|||| | || |||||||| ||| |||||||||| |||||||||||| |||||||||||||
Sbjct 269 GATGATGAA-TCTGGCGAGGTGGTTTCACTTGACCTTAGTTATGTCCTTCTCAACAACTC 327
Query 300 TTTGAAACCAAATAGTGGTCTTTTCAAACTCCAACAACTTCAGAACCTAACTCTTAGTGA 359
||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 328 TTTGAAACCAACTAGTGGTCTTTTCAAACTCCAACAACTCCAGAACCTGACTCTCAGTGA 387
Query 360 TTGCTATCTCTATGGAGAGATTACTTCTTCACTAGGAAACCTTTCTCGTCTCACGCATCT 419
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TTGCCATCTCTATGGAGAGGTTACTTCTTCACTAGGAAACCTTTCTCGTCTCACGCATCT 447
Query 420 TGACCTTTCGAGTAATCTA-CTGACAGGTGAAGTTCTGGCTTCAGTCAGCAAGCTAAACC 478
||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 448 TGACCTTTCGAGTAATC-AGCTGACAGGTGAAGTTCTGGCTTCGGTCAGTAAGCTAAACC 506
Query 479 AACTAAGAGACCTTTTACTTTCCGAAAACAGTTTTAGTGGTAATATTCCTACTTCATTTA 538
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 507 AACTTAGAGACCTTTTACTTTCCGAAAACAGTTTTAGTGGTAACATTCCTACTTCATTTA 566
Query 539 CCAATTTAACAAAGCTTTCTAGTTTAGACATCTCTAGCAATCAATTCACATTGGAAAATT 598
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 567 CCAATTTAACGAAGCTTTCTAGTTTAGACATCTCTAGCAATCAGTTCACATTGGAAAATT 626
Query 599 TCTCTTTTATACTACCAAATTTAACCAGCTTGTCCTCCTTAAACGTTGCCTCTAATCACT 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TCTCTTTCATACTACCAAATTTAACCAGCTTGTCCTCCTTAAACGTTGCCTCTAATCACT 686
Query 659 TTAAATCCACCCTTCCATCTGATATGAGTGGACTCCGCAACTTGAAATATTTTGATGTGC 718
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 687 TTAAATCCACGCTTCCATCTGATATGAGTGGACTCCACAACTTGAAATATTTTGATGTGC 746
Query 719 GTGAGAATTCATTTGTCGGGACTTTTCCTACATCCTTGTTCACGATTCCTTCCTTACAAG 778
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 747 GTGAGAATTCATTTGTCGGGACTTTTCCTACATCCTTATTCACGATTCCTTCGTTACAAA 806
Query 779 TTGTTTATTTGGAAGAAAACCAGTTCATGGGACCTATAAATTTTGGGAATATATCTTCAT 838
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 807 TTGTTTATTTGGAAGGAAACCAGTTCATGGGACCTATAAAGTTTGGGAATATATCTTCAT 866
Query 839 CGTCTAGGCTTCAGGATCTAAACCTTGCTCATAACAAATTCGATGGGCCAATCCCTGAAT 898
| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 867 CTTCTAGGCTTTGGGATCTAAACCTTGCTGATAACAAATTCGATGGGCCAATCCCTGAAT 926
Query 899 CTATATCTGAAATTCACAGTCTCATACTAGTAGATCTTAGCCACAACAACTTAGTTGGGC 958
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 927 ATATATCTGAAATTCACAGTCTCATAGTACTAGATCTTAGCCACAACAACTTAGTTGGGC 986
Query 959 CAATCCCCACTTCAATGTCAAAGTTAGTCAACCTTCAGCATCTTACG-CTTTCAAACAAT 1017
||||||||||||| || |||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 987 CAATCCCCACTTCTATATCAAAGTTGGTCAACCTTCAGCATCTTA-GTCTTTCAAACAAT 1045
Query 1018 AAGTTGGAAGGCGAAGTGCCTGGTTTTTTATGGGGATTGATAACAGTGACACTTTCCCAC 1077
| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||
Sbjct 1046 ACCTTGGAAGGCGAAGTGCCAGGTTGCTTATGGGGATTGATGACAGTGACACTTTCCCAC 1105
Query 1078 AATTCTTTCAGCAGTTTTGGAAAGTCATTATCCGGGGTTTTGGATGGAGAATCAATGTAC 1137
|||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||| |
Sbjct 1106 AATTCTTTCAACAGTTTTGGAAAGTCATCATCCGGAGCTTTGGATGGAGAATCAATGCAG 1165
Query 1138 GAGTTGGATCTTGGTTCAAATTCACTTGGAGGACCATTTCCGCATTGGATCTGCAAGCAA 1197
||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1166 GAGTTGGATCTTGGTTCGAATTCACTTGGAGGACCTTTTCCCCATTGGATCTGCAAGCAA 1225
Query 1198 AGATTCTTAAAGTTCTTAGATTTGTCCAATAATCGCTTCAACGGCTCAATTCCTCCTTGT 1257
|| |||||||||| |||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct 1226 AGGTTCTTAAAGTACTTAGACTTGTCCAACAATCTCTTCAACGGCTCAATTCCTCCTTGT 1285
Query 1258 TTGAAAAATTCCAATTATTGGCTTAAAGGGCTAGTTCTGCGTAACAACAGTTTCAGCGGA 1317
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1286 TTGAAAAATTCCACTTATTGGCTTAAAGGGCTAGTTCTGCGTAACAACAGCTTCAGCGGA 1345
Query 1318 ATTCTTCCAGACGTATTTGTCAATGCTACCATGTTACTATCACTTGACGTTAGCTACAAC 1377
|||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1346 TTTCTCCCAGACGTATTTGTCAATGCTAGCATGTTATTATCACTTGACGTTAGCTACAAC 1405
Query 1378 CGGTTGGAGGGGAAACTTCCAAAATCCTTGATCAATTGCACTTATATGGAACTTCTGAAT 1437
||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1406 CGGTTGGAGGGAAAACTTCCAAAATCCCTGATCAATTGCACTGGTATGGAACTTCTGAAT 1465
Query 1438 GTGGGAAGCAACATAATCAAGGACACTTTTCCATCCTGGTTGGGTTCTTTGCCATCATTA 1497
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1466 GTGGGAAGCAACATAATCAAGGACACTTTTCCATCCTGGTTGGTTTCTTTGCCATCATTA 1525
Query 1498 CGTGTCCTCATCCTCCGATCTAATGCATTCTATGGGTCGTTATATTATGACCACATAT-T 1556
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1526 CGTGTCCTCATCCTCAGATCTAATGCATTCTATGGGTCGTTATATTATGACCACATATCT 1585
Query 1557 TATTGGGTTTCAACATTTGAGACTCATTGATATATCACAAAATGGCTTCAGTGGAACTTT 1616
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1586 T-TTGGGTTTCAACATTTGAGACTCATTGATATATCACAGAATGGCTTCAGTGGAACTTT 1644
Query 1617 GTCACCTTTCTATTTCTCCAATTGGCGTGAGATGGTGACATCTGTCTTAGAAGATAACGG 1676
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1645 GTCACCTTTATATTTCTCCAATTGGCGTGAGATGGTGACATCTGTCTTAGAAGAAAACGG 1704
Query 1677 CTCTAATATAGGTACAGAGGATTGGTACATGGGGGAGAAAGGGCCCGAGTTCAGCCATAG 1736
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1705 CTCTAATATAGGTACAGAGGATTGGTACATGGGCGAGAAAGGGCCCGAGTTCAGCCATAG 1764
Query 1737 TAATTCGATGACTATGATATATAAAGGAGTAGAAACGGACTTCTTGCGGATCCCATATTC 1796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1765 TAATTCGATGACTATGATATATAAAGGAGTAGAAACGGACTTCTTGCGGATCCCATATTT 1824
Query 1797 CTTCAGAGCCATTGACTTTTCAGGAAACAAATTTTTTGGGAATATACCTGAATCCATTGG 1856
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||
Sbjct 1825 CTTCAGAGCCATTGACTTTTCTGGAAACAGATTTTTTGGGAATATACCTGAATCCGTTGG 1884
Query 1857 TTTGTTGAAGGAATTGCGTCTTCTCAATTTGTCAGGTAACGCATTCACAAGCAATATCCC 1916
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1885 TTTGTTGAAGGAATTGCGTCTTCTCAATTTGTCAGGTAACTCATTCACAAGCAATATCCC 1944
Query 1917 TCAATCATTGGCAAATTTGACAAGTCTCGAGACGTTAGACCTATCCCGGAATCAATTGTC 1976
||| ||||||||||||||||||| ||| ||||| || ||||||||||||||||| | ||
Sbjct 1945 TCAGTCATTGGCAAATTTGACAAATCTTGAGACATTGGACCTATCCCGGAATCAGCTATC 2004
Query 1977 AGGTCAGATTCCTCGAGATCTTGGTAGCCTCTCTTTTCTGTCGACCATGAATTTCTCCCA 2036
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2005 AGGTCACATCCCTCGAGATCTTGGTAGCCTCTCTTTTCTGTCGACCATGAATTTCTCCCA 2064
Query 2037 CAACCTTCTCGAAGGTCCAGTTCCACTAGGCACACAGTTTCAAAGCCAACATTGTTCTAC 2096
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2065 TAACCTTCTCGAAGGTCCAGTTCCACTAGGCACTCAGTTTCAAAGCCAACATTGTTCTAC 2124
Query 2097 ATTCATGGACAACCTCAGACTCTACGGTCTCGAGAAAATCTGTGGAACAA-CTCATGTCC 2155
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||
Sbjct 2125 ATTCATGGACAACCTCAGACTCTACGGTCTTGAGAAAATCTGTGGAA-AAGCTCATGCCC 2183
Query 2156 CGAATTCTACACCACGAGAATCTGAGGAATTTTCAGAACCAGAAGAACAAGTGATTAACT 2215
||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2184 CGAGTTCTACACCACTAGAATCCGAGGAATTTTCGGAACCAGAAGAACAAGTGATTAACT 2243
Query 2216 GGATAGCAGCGGCAATAGCCTATGGACCTGGTGTCTTCTGTGGATTAGTTATTGGACATA 2275
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 2244 GGATAGCAGCGGCAATAGCCTACGGACCTGGTGTGTTTTGTGGATTAGTTATTGGACATA 2303
Query 2276 TATTCTTTACTTCACACAAACACGAGTGGTTCATGGAAAAGTTCCATCGAAACAAGCGCA 2335
| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2304 TCTTCTTTACTGCACACAAACACGAGTGGTTCATGGAAAAATTCCATCGAAACAAGCGCA 2363
Query 2336 GAGTAGTCACCATAAGTACTCGTTGAACACCATCATCTCTCACAATTTCTCTGAGTGATT 2395
|||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2364 GAGTAGTCACCACAAGTGCTCGTTGAACACCATCACCTCTCACAATTTCTCTGAGTGATT 2423
Query 2396 GTGAAACATATATGTTTGTTATGATATCTGTCAGTTGTGTTATGCATAAACTCTTCGTCT 2455
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2424 GTGAAACGTATATGTTTGTTATGATATCTGTCAGTTGTGTTATGCATAAACTCTTTGTCT 2483
Query 2456 TTGTAATTT-CTACTTCATGGTATTGTAATAAACTGCTTTGGTGGTATCTGATCTTATAT 2514
||||||||| |||||| |||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 2484 TTGTAATTTTCTACTTTATGGTATTGTAAGAAACGGCTTTGGTGGTATCTGATCTTCTAT 2543
Query 2515 ATGTTGGCTTG 2525
||||||| |||
Sbjct 2544 ATGTTGGGTTG 2554
> AT3G05370.1 | Symbols: AtRLP31, RLP31 | receptor like protein
31 | chr3:1536014-1538719 REVERSE LENGTH=2706
Length=2706
Score = 429 bits (232), Expect = 6e-119
Identities = 714/941 (76%), Gaps = 56/941 (6%)
Strand=Plus/Plus
Query 737 GGA-CTTTTCCTACATCCTTGTTCACGATTCCTTCCTTA-CAAGTTGTTTATTTGGAAGA 794
||| |||| ||||| | ||||||||| ||||| | ||| ||| ||| | || || |
Sbjct 949 GGATCTTTCCCTACGTTCTTGTTCACAATTCCCACGTTAGAAAG-GGTTAACTTAGAGGG 1007
Query 795 AAACCAGT-TCATGGGACCTATAAATTTTGGGAATATATCTTCATCGTCTAGGCTTC-AG 852
|||||| | ||| ||||||| || | ||||| || || |||||||||||||| | || ||
Sbjct 1008 AAACCA-TCTCAAGGGACCTGTAGAGTTTGGAAACATGTCTTCATCGTCTAGTC-TCAAG 1065
Query 853 GATCTAAACCTTGCTCATAACAAATTCGATGGGC-CAATCCCTGAATCTATATCTGAAAT 911
||||||| ||||||| ||| ||||| || ||| | ||||| |||||| ||||| | |
Sbjct 1066 TTTCTAAACTTTGCTCAAAACGAATTCAAT-GGCTCGATCCCCGAATCTGTATCT-CAGT 1123
Query 912 -TCACAGTC-TCATACTAG-TAGATCTTAGCCACAACAACTT-AGTTGGGCCAATCCCCA 967
|| || || | | | || || ||||||| |||||| || | |||| ||||||| |
Sbjct 1124 ATCTCAATCTTGA-A-GAGCTACATCTTAGTTTCAACAATTTCA-TTGGTACAATCCCAA 1180
Query 968 CTTCAATGTCAAAGTTAGTCAACCTTCAGCATCTTACGCT-TTCAA-ACAATAAGT-TGG 1024
|| || |||||||||| ||| ||| | || || | | || || ||||||| | |||
Sbjct 1181 GATCTATATCAAAGTTAGCCAAACTTGAATAT-TTTTG-TCTTGAAGACAATAA-TATGG 1237
Query 1025 AAGGCGAAGTGCCTGGTTTTTTATGGGGATTGATAACAGTGACACTTTCCCACAATTCTT 1084
||| ||||| || ||| ||||| |||||| || ||| ||||||| |||||||||
Sbjct 1238 TAGGTGAAGTACCAAGTTGGCTATGGAGATTGACAATGGTGGCACTTTCTAACAATTCTT 1297
Query 1085 TCAGCAGTTTTGGAAAGTCATTATCCG-GGGTTTTGGATGGAGAATCA-ATGTAC-G-AG 1140
||| ||||||||| || || ||| | ||| || ||| || || || | || | | |
Sbjct 1298 TCAACAGTTTTGG--AG-AATCATCAGAAGGTCTT-GAT-GA-AA-CACAAGTTCAGTGG 1350
Query 1141 TTGGATCTTGGTTCAAATTCACTTGGAGGACCATTTCCGCATTGGATCTGCAAGCAAAGA 1200
||||||||| ||||||||||| || |||||||||||| |||||||| ||||||| |||
Sbjct 1351 TTGGATCTTAGTTCAAATTCATTTCAAGGACCATTTCCTCATTGGATATGCAAGCTTAGA 1410
Query 1201 TTC-TTAAAGTTCTTAGATT-TGTCCAATAATCGCTTCAACGGCTCAATTCCTCCTTGTT 1258
|| || || ||||| ||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 1411 -TCGTTGGAGATCTTA-ATTATGTCCGATAATCGCTTCAACGGCTCAATTCCTCCATGTT 1468
Query 1259 TGAAAAA--TTCCAATTATTGG-CTTAAAGGGCTAGTTCTGCGTAACAACAGTTTCAGCG 1315
| || | ||| | | || |||| || || |||| |||||||||||||| || |
Sbjct 1469 T-AAGCAGCTTC-A-TGGTTTCTCTTACAGATTTAATTCTACGTAACAACAGTTTGAGTG 1525
Query 1316 GAATTCTTCCAGACGTATTTGTCAATGCTACCATGTTACTATCACTTGACGTTAG-CTAC 1374
|| |||||| || ||||||||||||| || | | ||||||||||||||||||| | |
Sbjct 1526 GACCTCTTCCTGATATATTTGTCAATGCGACAAAGCTACTATCACTTGACGTTAGTCG-C 1584
Query 1375 AACCGGTTGGAGGG-GAAACTTCCAAAATCCTTGATCAATTGCACTTATATGGAACTTCT 1433
||| |||||| || | | || |||||||| |||||| |||||| |||| ||||| |
Sbjct 1585 AACAAGTTGGATGGAGTA-CTACCAAAATCTTTGATCCATTGCAAAGCTATGCAACTTTT 1643
Query 1434 GAATGTGGGAAGCAACATAATCAAGGACACTTTTCCATCCTGGTTGGGTTCTTTGCCATC 1493
||||||| ||||||||| ||||||||||| ||||| || ||||| || ||| | || ||
Sbjct 1644 GAATGTGAGAAGCAACAAAATCAAGGACAAGTTTCCTTCTTGGTTAGGATCTCTACCGTC 1703
Query 1494 ATTACGTGTCCTCATCCTCCGATCTAATGCA-TTCTATGGGTCGTTATATTATGACCACA 1552
||||| |||||||||||| ||||| |||| | || |||||| |||| ||| | ||| ||
Sbjct 1704 ATTACATGTCCTCATCCTACGATCAAATG-AGTTTTATGGGACGTTGTATCA--ACCCCA 1760
Query 1553 T--ATTTATTGGGTTTCAACA-TTTGAGACTCATTGATATATCACAAAATGGCTTCAGTG 1609
| || |||||||||||| | ||| ||| |||||||| | ||||| |||| ||| | ||
Sbjct 1761 TGCATCCATTGGGTTTCAA-AGTTTAAGAGTCATTGATGTCTCACACAATGACTTGATTG 1819
Query 1610 GAACTTTGTCACCTTTCTATTTCTCCAATTGGCGTGAGATG 1650
| || || | | |||||||| || | ||||||||| |||
Sbjct 1820 GGACGTTACCGTCATTCTATTTTTCTAGTTGGCGTGAAATG 1860
Score = 353 bits (191), Expect = 4e-96
Identities = 314/371 (85%), Gaps = 18/371 (5%)
Strand=Plus/Plus
Query 74 TTCTACGCACTCTTGCTTCTTCTAGGCTTCACTATTGCCGCCATGACCAAAGGGATGCTC 133
|||||| ||||||||||||| ||| ||||| | |||||||||||||||||||| ||||||
Sbjct 56 TTCTACACACTCTTGCTTCTCCTACGCTTCGCCATTGCCGCCATGACCAAAGGAATGCTC 115
Query 134 TTCTCGAGTTCAAACACGAGTTT-C-C-AGTAACTGAATCAAAGCGAAGTCC-------G 183
|||| |||||||||||||||||| | | |||| |||||| || | || ||| |
Sbjct 116 TTCTGGAGTTCAAACACGAGTTTCCGCGGGTAAATGAATCCAACCAAATTCCTTATGATG 175
Query 184 --TCGTTAAGTTCATGGAACAAGAGTAGTGATTGCTGTTTTTGGGAGGGTGTCACGTGTG 241
||||||||||||||||||||||| | |||||| |||| |||||||||||||||||| |
Sbjct 176 TATCGTTAAGTTCATGGAACAAGAGCATTGATTGTTGTTCTTGGGAGGGTGTCACGTGCG 235
Query 242 ATGCTA-AGTCTGGCGATGTGATTTCACTTGATCTTAGTTATGT-CGTTCTCAACAACTC 299
|||||| | ||| |||| |||||||||||| | |||||| |||| | | || || |||||
Sbjct 236 ATGCTATA-TCTAGCGAGGTGATTTCACTTAACCTTAGTCATGTTCCT-CTTAATAACTC 293
Query 300 TTTGAAACCAAATAGTGGTCTTTTCAAACTCCAACAACTTCAGAACCTAACTCTTAGTGA 359
||||||||||||||||||||||||||||| ||||| ||||| ||| |||| |||||| |
Sbjct 294 ATTGAAACCAAATAGTGGTCTTTTCAAACTTCAACATCTTCATAACTTAACCCTTAGTAA 353
Query 360 TTGCTA-TCTCTATGGAGAGATTACTTCTTCACTAGGAAACCTTTCTCGTCTCACGCATC 418
||| || |||||||||||| ||| |||||||| |||||||||||| ||||||||| | ||
Sbjct 354 TTG-TAGTCTCTATGGAGATATTCCTTCTTCATTAGGAAACCTTTTTCGTCTCACACTTC 412
Query 419 TTGACCTTTCG 429
|||||||||||
Sbjct 413 TTGACCTTTCG 423
> AT2G24165.1 | Symbols: | pseudogene, similar to HcrVf3 protein,
blastp match of 37% identity and 5.1e-32 P-value to GP|14330718|emb|CAC40827.1||AJ297741
HcrVf3 protein {Malus floribunda}
| chr2:10272672-10273595 REVERSE LENGTH=924
Length=924
Score = 320 bits (173), Expect = 4e-86
Identities = 332/405 (82%), Gaps = 25/405 (6%)
Strand=Plus/Plus
Query 39 TGTTACCTTTTATTTCTTCCTCTTGGGTTCCCTTGTTCTACGCAC-TCTTGCTTCTTCTA 97
|||||| || |||| |||| | |||| || | ||||||||| ||| | |||||||| |||
Sbjct 33 TGTTACGTTGTATTCCTTCTTTTTGGTTTTCTTTGTTCTACACACAT-TTGCTTCTCCTA 91
Query 98 GGCTTCACTATTGCCGCCATGACCAAAGGGATGCTCTTCTC-GAGTTCAAACACGAGTTT 156
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 92 CGCTTCACTATTGCCGCCATGACCAAAGGGATGCTCTT-TAAGAGTTCAAACACGAGTTT 150
Query 157 CC-AGT-AACTGAATCAAAGCGA-AGTCC-------G--TCGTTAAGTTCATGGAACAAG 204
|| | | || | |||| |||| | | ||| | || ||||||| ||||||||||
Sbjct 151 CCGA-TCAA-TCAATCCAAGCTAGA-TCCTTATTTTGCATCATTAAGTTTATGGAACAAG 207
Query 205 AGTAGTGATTGCTGTTTTTGGGAGGGTGTCACGTGTGATGCTAAGTCTGGCGATGTGATT 264
|| |||||||| |||| |||| ||||||||| ||| ||||||||||||||| | ||||||
Sbjct 208 AGCAGTGATTGTTGTTATTGGAAGGGTGTCAAGTGCGATGCTAAGTCTGGCAAGGTGATT 267
Query 265 TCACTTGATCTTAGTTATGTCGTTCTCAACAACTCTTTGAAACCAAATAGTGGTCTTTTC 324
|||||| | |||| ||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 268 TCACTTTACCTTAATTACGTCTTTCTCAACAACTCCTTGAAACCAAATAGTGGTCTTTTT 327
Query 325 AAACTCCAACAACTTCAGAACCTAACTC-TTAGTGA--TTGCTATCTCTATGGAGAGATT 381
||||||||||| ||||| || |||| | || | | ||||||||||||||| ||||||
Sbjct 328 AAACTCCAACATCTTCAAAAATTAAC-CATT--TCAACTTGCTATCTCTATGGGGAGATT 384
Query 382 ACTTCTTCACTAGGAAACCTTTCTCGTCTCACGCATCTTGACCTT 426
|||||| | | ||||||||||| | |||||| | ||| |||||
Sbjct 385 CCTTCTTTATTCGGAAACCTTTCCCATCTCACAAAACTTAACCTT 429
> AT2G24160.1 | Symbols: | pseudogene, leucine rich repeat protein
family, contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to Cf-4 (Lycopersicon
hirsutum) gi|2808683|emb|CAA05268; blastp match of
37% identity and 8.4e-98 P-value to GP|2808683|emb|CAA05268.1||AJ002235
Cf-4 {Lycopersicon hirsutum} | chr2:10268008-10270612
REVERSE LENGTH=2605
Length=2605
Score = 292 bits (158), Expect = 8e-78
Identities = 339/424 (80%), Gaps = 21/424 (5%)
Strand=Plus/Plus
Query 21 TTCCTTTTTTGGTA--G-TGTTGTTACCTTTTATTTCTTCCT-CTTGGGTTCCCTTGTTC 76
||||||| ||||| | |||| ||||||| |||||| | || |||| ||| || |||
Sbjct 2 TTCCTTTAATGGTATTGTTGTTATTACCTTGTATTTCAT-CTCCTTGTTTTCGTTTTTTC 60
Query 77 TACGCACTCTTGCTTCTTCTA-GGCTTCACTATTGCCGCCATGACCAAAGGGATGCTCTT 135
|| ||||||||||||| ||| ||| ||| |||||||||||| || ||||||||||||
Sbjct 61 CACACACTCTTGCTTCTCCTACGGC-CCACCGTTGCCGCCATGATCAGAGGGATGCTCTT 119
Query 136 CTCGAGTTCAAACACGAGTTTCCAGTAACTGA-ATCAA--AGCGAAGTC-CG-TCGT-TA 189
| |||||||||||||||||||| | | | || || || || || | | | |
Sbjct 120 TTGGAGTTCAAACACGAGTTTCCGGGAGCAGATATGAACTTCCGGAGACTTGAAAATATG 179
Query 190 AGTTCATGGAACAAGAGTAGTGATTGCTGTTTTTGGGAGGGTGTCACGTGTGATGCTAAG 249
|| |||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 180 AGGTCATGGAACAAGAGCAGTGATTGCTGTTCTTGGGAGTCTGTCACGTGTGATGCTAAA 239
Query 250 TCTGGCGATGTGATTTCACTTGATCTTAGTTATGTCG-T--TCTCAACAACTCTTTGAAA 306
| |||| | |||||||||||| ||||| | || || | ||| |||||| |||| |||
Sbjct 240 TATGGCCAGGTGATTTCACTTTATCTT--CT-TGGCGTTAATCTTAACAACACTTTAAAA 296
Query 307 CCAAATAGTGGTCTTTTCAAACTCCAACAACTTCAGAACCTAACTCTTAGTGATTGCTAT 366
||||||||||||||||||||||||||| | || || |||||||| ||| || ||||| ||
Sbjct 297 CCAAATAGTGGTCTTTTCAAACTCCAATATCTCCAAAACCTAACCCTTCGTTATTGCAAT 356
Query 367 CTCTATGGAGAGATTACTTCTTCACTAGGAAACCTTTCTCGTCTCACGCAT-CTTGACCT 425
||||||||||||||| ||| |||| |||||| |||||||| |||||| | | || |||||
Sbjct 357 CTCTATGGAGAGATTCCTTTTTCATTAGGAACCCTTTCTCATCTCAC-CTTTCTCGACCT 415
Query 426 TTCG 429
||||
Sbjct 416 TTCG 419
Score = 156 bits (84), Expect = 1e-36
Identities = 175/217 (81%), Gaps = 14/217 (6%)
Strand=Plus/Plus
Query 730 TTTGTCGGGACTTTTCCTACATCCTTGTTCACGATTCCTTCCTTACAAGTTGTTTA-TTT 788
||| ||||| ||||||||||||||||||||||||||||||| |||| | | | ||| |||
Sbjct 639 TTTTTCGGGCCTTTTCCTACATCCTTGTTCACGATTCCTTCGTTACGA-TGGGTTAATTT 697
Query 789 G-G--A-AG-AA-AACCAGTTCATGGGACCTATAAATTTTGGGAATATA-TCTTCATCGT 841
| | | || || ||| | |||| ||||| |||| ||||||||||| | |||| ||| |
Sbjct 698 GAGGGACAGTAACAACAACTTCACGGGACATATAGATTTTGGGAAT-TCGTCTTTATCTT 756
Query 842 CTAGGCTT-CAGGATCTAAACCTTGCTCATAACAAATTCGATGGGCCAATCCCTGAATCT 900
|||||||| | |||| | |||||| ||||||| |||||||| ||||||||||||||
Sbjct 757 CTAGGCTTTCTT-ATCTTAGTCTTGCTGATAACAATTTCGATGGCCCAATCCCTGAATCC 815
Query 901 ATATCTGAAATT-CACAGTCTCATACTAGTAGATCTT 936
|||||| ||||| | || |||| || || ||||||||
Sbjct 816 ATATCT-AAATTTCTCAATCTCGTATTATTAGATCTT 851
> AT1G71400.1 | Symbols: AtRLP12, RLP12 | receptor like protein
12 | chr1:26909835-26912597 FORWARD LENGTH=2763
Length=2763
Score = 67.6 bits (36), Expect = 6e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 373 GGAGAGATTACTTCTTCACTAGGAAACCTTTCTCGTCTC 411
||||||||| |||||||||||||||||||||||||||||
Sbjct 584 GGAGAGATTCCTTCTTCACTAGGAAACCTTTCTCGTCTC 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125317023614
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5