BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477828
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05390.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2527 0.0
> AT3G05390.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED
DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF248, methyltransferase putative (InterPro:IPR004159);
BEST Arabidopsis thaliana protein match is:
S-adenosyl-L-methionine-dependent methyltransferases superfamily
protein (TAIR:AT4G01240.1); Has 507 Blast hits to 498
proteins in 33 species: Archae - 4; Bacteria - 8; Metazoa -
0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr3:1546443-1548300 REVERSE LENGTH=1684
Length=1684
Score = 2527 bits (1368), Expect = 0.0
Identities = 1574/1669 (94%), Gaps = 31/1669 (2%)
Strand=Plus/Plus
Query 1 AAAAACAATCTCATGAGTCTCTTAGACTTTTCCTCGAGAAACCAGAGACGAAAGGTTTCC 60
|||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 16 AAAAACAAACTCATGAATCTCTTCTACTTTTCCTCGAGACACCAGAGACGAAAGGTTTCC 75
Query 61 ATCAAAACATCAAGGAACGTC-TCTTCTTCTCTGGTATTCTTATGTCAAGATTAGAACCA 119
||||||||||||||| | | | || |||||| | ||||||| || | ||||||
Sbjct 76 ATCAAAACATCAAGG-A-G-CATC-TCTTCT-T--AATTCTTA--TC-----T-GAACCA 120
Query 120 ATAACTGAAAGATAATATATTTTTGGTCAAGAAGAGGAAATGGGAAGAGCATGTTTACCG 179
||||||||||| | ||||||||||||||||||||||||||| ||||||| |||
Sbjct 121 ATAACTGAAAG-------A--TTTGGTCAAGAAGAGGAAATGGGAAGAACATGTTTGCCG 171
Query 180 AGATGGCGATTAGGAAGACTAATGGCAGGATTACAAGTAATCTTGGGATTACTGGTGATC 239
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 172 AGATGGCGATTAGGAAGACTAATGGCAGGATTACAAGTCATCTTAGGATTACTGGTGATC 231
Query 240 ACTGTGAGCCTCTCATGTCTCTACCGATTCCATTCCGCT-GGTTACTTCTTGCACAACGA 298
||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||
Sbjct 232 ACTGTGAGCCTCTCATGTCTCTACCGATTCCATTCCG-TGGGTTACTTCTTGCAAAACGA 290
Query 299 AGACGTTTGCAACAATATCTACACAATCAAAGAAGTCAGCAACGAAGGATTCGACATAAA 358
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 291 AGACACTTGCAACAATATCTACACAATCAAAGAAGTCAGCAGCGAAGGATTCGACCTAAA 350
Query 359 GGCGCTGCATGATCGCGTTGATGAAGTACTAGAAAAGATGGACAACTTGTACGAGAAGCT 418
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GGCGCTGCACGATCGTGTTGATGAAGTACTAGAAAAGATGGACAACTTGTACGAGAAGCT 410
Query 419 TGAGAAGACGGTAAAAGAGATGGAGAAGAGCAAAGACGGAAGCAAAAAGGAGATGAAGAA 478
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AGAGAAGACGGTAAAAGATATGGAGAAGAGCAAAGACGGAAGCAAAAAGGAGATGAAGAA 470
Query 479 GTTTCTTGAAGATGAAGTGATGAAGCCATTCTATTATGCTCATATCGGATTAAGGCAAAT 538
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 471 GTTTCTTGAAGATGAAGTGATGAAGCCATTTTATTATGCTCATATCGGATTAAGGCAAAT 530
Query 539 CCGGTTACCAAAACCCGAAGGAATCAGAAACTCGACGGAAAAGGAAGAGCCTTTGATCAA 598
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 531 CCGGTTGCCAAAACCCGAAGGAATCAGAAACTCAACGGAAAAGGAAGAGCCTTTGATCAA 590
Query 599 TAAGTTTCTCATTGAGGAGATAAGGCAGTACATTACACCGAAGAAGAATCGGGTTGGGAA 658
||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct 591 TAAGTTTCTCATTGAAGAGATAAGGCAGTACATTACACCAAAGGAGAATCGTGTTGGGAA 650
Query 659 GATAAACATGTTTGGAACAGAGAGAGTTTACAACACTATTGGTCATGCTTGTGCGTTGAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GATAAACATGTTTGGAACAGAGAGAGTTTACAACACTATTGGTCATGCTTGTGCGTTGAT 710
Query 719 GAAGATAGAGCTAGAGAAGTATATGGATTATGACGTTGGAGCGTATTGCGATGATGATTG 778
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GAAGATGGAGCTAGAGAAGTATATGGATTATGACGTTGGAGCGTATTGCGATGATGATTG 770
Query 779 GAACTTAGCACAGAAGCTGATGCTTAACGGGTGTGATCCATTACCTAGAAGACGATGCTT 838
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 771 GAACTTAGCACAGAAGCTGATGCTTAACGGGTGTGATCCGTTACCTAGAAGACGATGCTT 830
Query 839 GACAAGAGCATCGATGACTTACCAGAAACCTTATCCGATCAACAAGTCATTGTGGAAGCT 898
|||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 831 GACAAGAGCATCAATGACTTACCAAAAACCTTATCCGATCAATGAGTCACTGTGGAAGCT 890
Query 899 TCCTGATGATAGAAATGTAAGATGGGGAAATTACCAATGCAGGAATTTCGCGTGCTTATC 958
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 891 TCCTGATGATAGAAATGTAAGATGGGGAAATTATCAATGCAGGAACTTCGCGTGCTTATC 950
Query 959 AAGCAAGAACCCGAAAAGGGGTTACACGAAATGCA-CTGGATGTTTTGAAATGGAGAAAG 1017
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 951 AAGCAAGAACCCGAAAAGGGGTTACACGAAATGCAGC-GGATGTTTTGAAATGGAGAAAG 1009
Query 1018 AGGGTGATAAATGGGTCAAGAACAGTACTTTGTTAGTTGATTTCATGATTGAGGATGTTC 1077
|| |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct 1010 AGAAAGATAAATGGGTCAAGAACAGTAGTTTGTTAGTTGATTTTATGATTGAAGATGTTC 1069
Query 1078 TGAGAGTGAAGCCAGGTGAGATTAGGATTGGACTGGATTATGGTGTCGGGACAGGGACAT 1137
|||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||| ||||
Sbjct 1070 TGAGAGTGAAGCCAAGTGAGATCAGGATTGGATTGGATTATGGTGTTGGGACAGGAACAT 1129
Query 1138 TTGCAGCAAGAATGAGAGAGAAGAATGTGACTATTGTCACAACTGCTTTGAATTTGGGAG 1197
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1130 TTGCAGCAAGAATGAGAGAGAAGAATGTGACTATTGTCACAACAGCTTTGAATTTGGGAG 1189
Query 1198 CTCCTTTCAATGAGATGATTGCTTTGAGAGGTTTGATCCCATTGTACATATCTTTGAACC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CTCCTTTCAATGAGATGATTGCTTTGAGAGGTTTGATCCCATTGTACATATCTTTGAACC 1249
Query 1258 AGAGGCTGCCGTTCTTCGACAACACAATGGATATGATTCACACTGCCGGGTTAATGGATG 1317
||||||| ||||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 1250 AGAGGCTACCGTTCTTCGATAATACAATGGATATGATTCACACTACCGGGTTAATGGATG 1309
Query 1318 GTTGGATCGATCTTCTTCTGATGGATTTCGTGTTATATGATTGGGACCGAGTGCTGAGAC 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GTTGGATCGATCTTCTTCTGATGGATTTCGTGTTATATGATTGGGACCGAGTGCTGAGAC 1369
Query 1378 CGGGTGGGCTACTGTGGATTGATAGATTCTTCTGTAAAAAGAAGGATCTTGATGATTATA 1437
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1370 CGGGAGGGTTACTGTGGATTGATAGATTCTTCTGTAAAAAGAAGGATCTTGATGATTACA 1429
Query 1438 TGTACATGTTTCTGCAATTTAGGTACAAGAAACACAAGTGGGCTGTTTCACCTAAATCAA 1497
|||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1430 TGTACATGTTCCTGCAGTTTAGGTACAAGAAACACAAGTGGGCTATTTCACCTAAATCCA 1489
Query 1498 AGGATGAGGTTTATCTCTCTGCATTGCTCGAGAAACCTCCTCGTGCAATTTAAGGATTAC 1557
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1490 AGGATGAGGTTTATCTCTCTGCATTGCTTGAGAAACCTCCTCGTGCAATTTAAGGATTAC 1549
Query 1558 ATTATTAAGTTTAAGCTTCAATGTTTGTAATTGACATTCTTACTCATTTGATTGGCTAAT 1617
| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1550 AATATGAAGTTTAAGCTTCAATGTTTGTAATTGACATTCTTACTCATTTGGTTGTCTAAT 1609
Query 1618 CCTTGT-CTTAGTTTGAATACAACAGAGATTTTCAGCTCTGTTTCACTT 1665
|||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 1610 CCTTGTTCT-AGTTTGAATACAACAGAGGTTTTCAGCTCTGTTTCACTT 1657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5