BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477834

Length=460
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05460.1 | Symbols:  | sporozoite surface protein-related | ...   363    1e-99
  AT3G45093.1 | Symbols:  | Defensin-like (DEFL) family protein |...  54.7    8e-07


> AT3G05460.1 | Symbols:  | sporozoite surface protein-related 
| chr3:1577800-1578734 FORWARD LENGTH=617
Length=617

 Score =  363 bits (196),  Expect = 1e-99
 Identities = 294/339 (87%), Gaps = 16/339 (5%)
 Strand=Plus/Plus

Query  134  CAAATAGAGGCAGTGGGGAT-TATCAC---GATCATCCTTGCAATCCAAGCGATCCAAAG  189
            |||| |||||||||||  || | ||||   |||| ||||||||| ||||| |||||||||
Sbjct  278  CAAACAGAGGCAGTGGATATCT-TCACGATGATCCTCCTTGCAACCCAAGAGATCCAAAG  336

Query  190  TGC---G-ACAAACCTTGTAATCCAGAGAATCCAAATTGCAGAATGAAACAAGGTGTCAT  245
            |||   | | |||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct  337  TGCATAGTA-AAACCTTGTAATCCAGAGAATCCAAATTGCAGAATGGAACAAGGTGCCAT  395

Query  246  TGAGCCAAATAGAGGCAATGGGTATCTGCACGATGATCCTCCTTGCAATCCAA-ATGATC  304
            | ||||||| ||||||| ||| ||||| ||||||||||||||||||||||||| | ||||
Sbjct  396  TAAGCCAAACAGAGGCAGTGGATATCTTCACGATGATCCTCCTTGCAATCCAAGA-GATC  454

Query  305  CAAAGTGCG-AC-AAA-CCTTGTGATCCAGAGAATCCAAATTGCTGAAAGAAATAAGGCG  361
            |||| |||  |  ||| |||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct  455  CAAAATGCATAGTAAAACCTTGTAATCCAGAGAATCCAAATTGCTAAAAGAAACAAGGCG  514

Query  362  TTGATGGGACAAGAAGCAGAAATGGTAGCTATGGGAATTTAAATGATAAGATATGTGAAT  421
            ||||| | | ||||||||| | ||||||| |||||||| ||| | |||||||||||||||
Sbjct  515  TTGATAGTA-AAGAAGCAGTATTGGTAGCAATGGGAATGTAAGTTATAAGATATGTGAAT  573

Query  422  GCCTTATAAAACGTATTTAATTGAATAAAACGTGTTTGT  460
            ||||||||||||| |||| ||||||||||||||||||||
Sbjct  574  GCCTTATAAAACGCATTTTATTGAATAAAACGTGTTTGT  612


 Score =  348 bits (188),  Expect = 3e-95
 Identities = 328/390 (84%), Gaps = 32/390 (8%)
 Strand=Plus/Plus

Query  1    ATCATTAAAAGCAAAATACACTGTAACAGTTTTCTTTGGAGGATGAAGAACGTTTCCTTT  60
            |||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||
Sbjct  1    ATCACTAAAAGCAAAATACACCGTAACAGTTTTCGTTGGAAGATGAAGAACGTTTCCTTT  60

Query  61   CAACTTTTGTTATTGGTTTCTCTTCTTGTTCTTGTCTTTCGACATGATCTTGTGGAAGGT  120
            || |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  61   CAGCTTTTGTTTTTGGTTTCTCTTCTTGTTCTTGTCTTTGGACATGATCTTGTGAAAGGT  120

Query  121  ------A-GG--AC-AA-----------TGCATACAAATAGAGGCAGTGGGGATTATCAC  159
                  | ||  || ||           ||||||||||||||||||||||   || ||||
Sbjct  121  AGGACAATGGATACAAATGGTGGCGGCGTGCATACAAATAGAGGCAGTGGATTTTTTCAC  180

Query  160  G---ATCATCCTTGCAATCCAAGCGATCCAAAGTGC---GACAAACCTTGTAATCCAGAG  213
            |   ||| ||||||||||||||| ||||||||||||   || ||||||||||||||||||
Sbjct  181  GATAATCCTCCTTGCAATCCAAGAGATCCAAAGTGCATAGATAAACCTTGTAATCCAGAG  240

Query  214  AATCCAAATTGCAGAATGAAACAAGGTGTCATTGAGCCAAATAGAGGCAATGGGTATCTG  273
            |||||||||||||||||| ||||||||| |||| ||||||| ||||||| ||| ||||| 
Sbjct  241  AATCCAAATTGCAGAATGGAACAAGGTGCCATTAAGCCAAACAGAGGCAGTGGATATCTT  300

Query  274  CACGATGATCCTCCTTGCAATCCAA-ATGATCCAAAGTGCG-AC-AAA-CCTTGTGATCC  329
            |||||||||||||||||||| |||| | ||||||||||||  |  ||| |||||| ||||
Sbjct  301  CACGATGATCCTCCTTGCAACCCAAGA-GATCCAAAGTGCATAGTAAAACCTTGTAATCC  359

Query  330  AGAGAATCCAAATTGCTGAAAGAAATAAGG  359
            |||||||||||||||| ||| | || ||||
Sbjct  360  AGAGAATCCAAATTGCAGAATGGAACAAGG  389


 Score = 97.1 bits (52),  Expect = 1e-19
 Identities = 96/115 (83%), Gaps = 12/115 (10%)
 Strand=Plus/Plus

Query  134  CAAATAGAGGCAGTGGGGAT-TATCAC---GATCATCCTTGCAATCCAAGCGATCCAAAG  189
            |||| |||||||||||  || | ||||   |||| ||||||||||||||| |||||||| 
Sbjct  401  CAAACAGAGGCAGTGGATATCT-TCACGATGATCCTCCTTGCAATCCAAGAGATCCAAAA  459

Query  190  TGC---G-ACAAACCTTGTAATCCAGAGAATCCAAATTGC-AGAATGAAACAAGG  239
            |||   | | |||||||||||||||||||||||||||||| | || |||||||||
Sbjct  460  TGCATAGTA-AAACCTTGTAATCCAGAGAATCCAAATTGCTAAAA-GAAACAAGG  512


> AT3G45093.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr3:16496811-16497290 FORWARD LENGTH=243
Length=243

 Score = 54.7 bits (29),  Expect = 8e-07
 Identities = 43/49 (88%), Gaps = 4/49 (8%)
 Strand=Plus/Plus

Query  43  ATGAAGAA-CGTTTCCTTTC-AACTTTTGTTATTGGTTTCTCTTCTTGT  89
           ||| |||| | ||| | ||| ||||||||||||||||||||||||||||
Sbjct  1   ATG-AGAAGCATTT-CATTCAAACTTTTGTTATTGGTTTCTCTTCTTGT  47



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21916738564


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5