BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477837 Length=1368 Score E Sequences producing significant alignments: (Bits) Value AT3G05480.3 | Symbols: RAD9 | cell cycle checkpoint control pro... 1674 0.0 > AT3G05480.3 | Symbols: RAD9 | cell cycle checkpoint control protein family | chr3:1585302-1588722 FORWARD LENGTH=1553 Length=1553 Score = 1674 bits (906), Expect = 0.0 Identities = 960/986 (97%), Gaps = 3/986 (0%) Strand=Plus/Plus Query 386 GTATGAAGAAAACATATTGGATTACTTGCAATGTGGAACCAGATATACAGCATCTGTCCC 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 GTATGAAGAAAACATATTGGATTACTTGCAATGTGGAACCAGATATACAGCATCTGTCCC 526 Query 446 TTGATAGGGGTAGATTTCCTAGTACCTTAGTCGTGCATCCTCGAAATCTGAGCAAGTTGC 505 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 527 TTGATAGGGGTAGATTTCCTAGTACCTTAGTCATGCATCCTCGAAATCTGAGCAAGTTGC 586 Query 506 TTGGAAACTTCCAGTCATCCCTCCAAGAGATTACAATAATTGCTACAGATCAAACTTCTT 565 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 587 TTGGAAACTTCCAGTCATCCCTCCAAGAGATTACAATTATTGCTACAGACCAAACTTCTT 646 Query 566 TCCCCTCTGATGCTGCAAGTGAAATAGGTGGAAAATCTGTTGAGTTTCGGAGCTATGTGG 625 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 647 TCCCCTCTGATGCTGCAAGTGAAATAGGTGGAAAAGCTGTTGAGTTTCGGAGCTATGTGG 706 Query 626 ATCCTACCAAAGATGGCGACGCTTTGTTACATACTCAGCTATGGATTGATCCATCAGAAG 685 |||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 707 ATCCTACCAAAGATGGTGACTCTTTGTTACATACACAGCTATGGATTGATCCATCAGAAG 766 Query 686 AATTTTTGCAGTATACTCACGCAGGTGATCCCGTTGACATCACATTTTCCTTGAAGGAAC 745 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 767 AATTTTTGCAGTATACTCACGCAGGTGATCCAGTTGACATCACATTTTCCTTGAAGGAAC 826 Query 746 TAAAGGCATTTCTGGCATTTTGTGAGGGCTGTGAAGCTGATATTCATCtttttttCGAAA 805 ||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||| Sbjct 827 TAAAGGCATTTCTTGCATTCTGCGAGGGCTGTGAAGCCGATATTCATCTTTTTTTCGAAA 886 Query 806 AAGCTGGCGAACCAATACTGATGGCTCCAAAATTCGGTTTGGGTGATGGGTCAAGCTCCA 865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 AAGCTGGCGAACCAATACTGATGGCTCCAAAATTCGGTTTGGGTGATGGGTCAAGCTCCA 946 Query 866 GTTTTGATGCAACACTCGTTCTTGCGACAATGCTTGTGTCTCAACTTCAGGAAGGGATTC 925 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 947 GTTTTGATGCAACACTCGTTCTTGCGACAATGCTTGTGTCTCAACTTCAGGAAGGGATTC 1006 Query 926 CGGCAGAACCTCCTGAAGCAGCAAACTCCACAGGTGGCCATGCTGCCGAGCAAGTAGGAT 985 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 CGGCAGAACCTCCTGAAGCAGCAAACTCCACAGGTGGCCATGCTGCCGAGCAAGTAGGAT 1066 Query 986 CACAGCCTCAAGAACGGTCTAGGCAAAATGCCTCTGTGCACCCATCTGATCACACACGAG 1045 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1067 CACGGCCTCAAGAACGGTCTAGGCAAAATGCCTCTGAGCACCCATCTGATCACACACGAG 1126 Query 1046 TTTGGTCTGAACTTTCAGGAACTGCCACTAAGAGCGTGAACGGTACTGAGGATAGGCCAC 1105 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1127 TATGGTCTGAACTTTCAGGAACTGCCACTAAGAGCGTGAACGGTACTGAGGATAGGCCAC 1186 Query 1106 AGGCTCAGGGACAACCAGACTTGGATATCCAAAGAATTAGGAATATGGAAATATCAAAAG 1165 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1187 AGGCTCAGGGACAACCAGACTTGGATATCCATAGAATTAGGAATATGGAAATATCAAAAG 1246 Query 1166 GCGGGCCAGCTGGAGATACTGCTCCTGCAGCTCCT---AACTCCCAACGTCCCACACAGA 1222 ||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1247 GCGGGCCAGTTGGAGATACTGCTCCTGCAGCTCCTCCTAAGTCCCAACGTCCCACACAGA 1306 Query 1223 TAGATCATGCTGAAGGATCCCGAGTACGGGTACAGAACCAAAGTTTCTCCCAGCACCATC 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1307 TAGATCATGCTGAAGGATCCCGAGTACGGGTACAGAACCAAAGTTTCTCCCAGCACCATC 1366 Query 1283 CTAGTAATTGGGTAGATGCAAATGAGGAAGAAGACGACGACGAAGAAGGTGTCGAGGCGA 1342 ||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 1367 CTAGTAATTGGGTGGATGCAAATGAGGAAGAAGAAGATGACGACGAAGGTGTCGAGGCGA 1426 Query 1343 CGCCACCTCACAATGAAGATTATTAA 1368 | |||||||||||||||||||||||| Sbjct 1427 CACCACCTCACAATGAAGATTATTAA 1452 Score = 604 bits (327), Expect = 5e-172 Identities = 367/386 (95%), Gaps = 4/386 (1%) Strand=Plus/Plus Query 1 AAGGTTTAAATCAAAATTTGAATTTATTTTTCTagagagagagagagagagaTGGAGTTC 60 ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 33 AAGGTTTAAATTAAAATTTGAATTTATTTTTCT--CCAGAGACAGAGAGAGATGGAGTTG 90 Query 61 AGTATCAGTGGCAATGGGCTCAAGACCTTTG-CTAGGTCTATAATCTGCCTCGCACGCGT 119 |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||| Sbjct 91 AGTATCAGTGGCAATGCGCTCAAGACC-TTGTCTAGGTCTATAATCTGCCTCGCACGCGT 149 Query 120 CGGCAACGAGCTCGTCGTCCAAGCTTCGCCGACGCGGCTGGCATTGCACACTTTAAATGC 179 ||| ||||||||||| ||||||||||||||||| | |||||||||||||||||| ||||| Sbjct 150 CGGTAACGAGCTCGTTGTCCAAGCTTCGCCGACACAGCTGGCATTGCACACTTTGAATGC 209 Query 180 TTCACGTTCTGCCTATCAATGTATTACATTTCAGTCAAGTTTCTTTGATGTATATACTGT 239 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 210 TTCACGTTCTGCCTATCAGTGTATCACATTTCAGTCAAGTTTCTTTGATGTATATACTGT 269 Query 240 TTCTGGTCCTCAAGCTCATTTCAGTGTACTTTTGAAGGCTGTTTGTTCTGTTCTTAGAAC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 270 TTCTGGTCCTCAAGCTCATTTCAGTGTACTTTTGAAGGCTGTTTGTTCTGTTCTTAGAAC 329 Query 300 CCCTCTCGCCAGCATTGATCACATGAGTGTGCAGTTGCCAGATCATGATGCATCTAAGGT 359 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 330 CCCTCTCGCGAGCATTGATCATATGAGTGTGCAGTTGCCAGATCATGATGCATCTAAGGT 389 Query 360 CAAATGGACTTTGCAGTGTTACAGTG 385 |||||||||||||||||||||||||| Sbjct 390 CAAATGGACTTTGCAGTGTTACAGTG 415 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67369131390 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5