BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477837
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05480.3 | Symbols: RAD9 | cell cycle checkpoint control pro... 1674 0.0
> AT3G05480.3 | Symbols: RAD9 | cell cycle checkpoint control protein
family | chr3:1585302-1588722 FORWARD LENGTH=1553
Length=1553
Score = 1674 bits (906), Expect = 0.0
Identities = 960/986 (97%), Gaps = 3/986 (0%)
Strand=Plus/Plus
Query 386 GTATGAAGAAAACATATTGGATTACTTGCAATGTGGAACCAGATATACAGCATCTGTCCC 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GTATGAAGAAAACATATTGGATTACTTGCAATGTGGAACCAGATATACAGCATCTGTCCC 526
Query 446 TTGATAGGGGTAGATTTCCTAGTACCTTAGTCGTGCATCCTCGAAATCTGAGCAAGTTGC 505
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 527 TTGATAGGGGTAGATTTCCTAGTACCTTAGTCATGCATCCTCGAAATCTGAGCAAGTTGC 586
Query 506 TTGGAAACTTCCAGTCATCCCTCCAAGAGATTACAATAATTGCTACAGATCAAACTTCTT 565
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 587 TTGGAAACTTCCAGTCATCCCTCCAAGAGATTACAATTATTGCTACAGACCAAACTTCTT 646
Query 566 TCCCCTCTGATGCTGCAAGTGAAATAGGTGGAAAATCTGTTGAGTTTCGGAGCTATGTGG 625
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 647 TCCCCTCTGATGCTGCAAGTGAAATAGGTGGAAAAGCTGTTGAGTTTCGGAGCTATGTGG 706
Query 626 ATCCTACCAAAGATGGCGACGCTTTGTTACATACTCAGCTATGGATTGATCCATCAGAAG 685
|||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 707 ATCCTACCAAAGATGGTGACTCTTTGTTACATACACAGCTATGGATTGATCCATCAGAAG 766
Query 686 AATTTTTGCAGTATACTCACGCAGGTGATCCCGTTGACATCACATTTTCCTTGAAGGAAC 745
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 767 AATTTTTGCAGTATACTCACGCAGGTGATCCAGTTGACATCACATTTTCCTTGAAGGAAC 826
Query 746 TAAAGGCATTTCTGGCATTTTGTGAGGGCTGTGAAGCTGATATTCATCtttttttCGAAA 805
||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 827 TAAAGGCATTTCTTGCATTCTGCGAGGGCTGTGAAGCCGATATTCATCTTTTTTTCGAAA 886
Query 806 AAGCTGGCGAACCAATACTGATGGCTCCAAAATTCGGTTTGGGTGATGGGTCAAGCTCCA 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AAGCTGGCGAACCAATACTGATGGCTCCAAAATTCGGTTTGGGTGATGGGTCAAGCTCCA 946
Query 866 GTTTTGATGCAACACTCGTTCTTGCGACAATGCTTGTGTCTCAACTTCAGGAAGGGATTC 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GTTTTGATGCAACACTCGTTCTTGCGACAATGCTTGTGTCTCAACTTCAGGAAGGGATTC 1006
Query 926 CGGCAGAACCTCCTGAAGCAGCAAACTCCACAGGTGGCCATGCTGCCGAGCAAGTAGGAT 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CGGCAGAACCTCCTGAAGCAGCAAACTCCACAGGTGGCCATGCTGCCGAGCAAGTAGGAT 1066
Query 986 CACAGCCTCAAGAACGGTCTAGGCAAAATGCCTCTGTGCACCCATCTGATCACACACGAG 1045
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1067 CACGGCCTCAAGAACGGTCTAGGCAAAATGCCTCTGAGCACCCATCTGATCACACACGAG 1126
Query 1046 TTTGGTCTGAACTTTCAGGAACTGCCACTAAGAGCGTGAACGGTACTGAGGATAGGCCAC 1105
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TATGGTCTGAACTTTCAGGAACTGCCACTAAGAGCGTGAACGGTACTGAGGATAGGCCAC 1186
Query 1106 AGGCTCAGGGACAACCAGACTTGGATATCCAAAGAATTAGGAATATGGAAATATCAAAAG 1165
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1187 AGGCTCAGGGACAACCAGACTTGGATATCCATAGAATTAGGAATATGGAAATATCAAAAG 1246
Query 1166 GCGGGCCAGCTGGAGATACTGCTCCTGCAGCTCCT---AACTCCCAACGTCCCACACAGA 1222
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1247 GCGGGCCAGTTGGAGATACTGCTCCTGCAGCTCCTCCTAAGTCCCAACGTCCCACACAGA 1306
Query 1223 TAGATCATGCTGAAGGATCCCGAGTACGGGTACAGAACCAAAGTTTCTCCCAGCACCATC 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TAGATCATGCTGAAGGATCCCGAGTACGGGTACAGAACCAAAGTTTCTCCCAGCACCATC 1366
Query 1283 CTAGTAATTGGGTAGATGCAAATGAGGAAGAAGACGACGACGAAGAAGGTGTCGAGGCGA 1342
||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 1367 CTAGTAATTGGGTGGATGCAAATGAGGAAGAAGAAGATGACGACGAAGGTGTCGAGGCGA 1426
Query 1343 CGCCACCTCACAATGAAGATTATTAA 1368
| ||||||||||||||||||||||||
Sbjct 1427 CACCACCTCACAATGAAGATTATTAA 1452
Score = 604 bits (327), Expect = 5e-172
Identities = 367/386 (95%), Gaps = 4/386 (1%)
Strand=Plus/Plus
Query 1 AAGGTTTAAATCAAAATTTGAATTTATTTTTCTagagagagagagagagagaTGGAGTTC 60
||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 33 AAGGTTTAAATTAAAATTTGAATTTATTTTTCT--CCAGAGACAGAGAGAGATGGAGTTG 90
Query 61 AGTATCAGTGGCAATGGGCTCAAGACCTTTG-CTAGGTCTATAATCTGCCTCGCACGCGT 119
|||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 91 AGTATCAGTGGCAATGCGCTCAAGACC-TTGTCTAGGTCTATAATCTGCCTCGCACGCGT 149
Query 120 CGGCAACGAGCTCGTCGTCCAAGCTTCGCCGACGCGGCTGGCATTGCACACTTTAAATGC 179
||| ||||||||||| ||||||||||||||||| | |||||||||||||||||| |||||
Sbjct 150 CGGTAACGAGCTCGTTGTCCAAGCTTCGCCGACACAGCTGGCATTGCACACTTTGAATGC 209
Query 180 TTCACGTTCTGCCTATCAATGTATTACATTTCAGTCAAGTTTCTTTGATGTATATACTGT 239
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 210 TTCACGTTCTGCCTATCAGTGTATCACATTTCAGTCAAGTTTCTTTGATGTATATACTGT 269
Query 240 TTCTGGTCCTCAAGCTCATTTCAGTGTACTTTTGAAGGCTGTTTGTTCTGTTCTTAGAAC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 TTCTGGTCCTCAAGCTCATTTCAGTGTACTTTTGAAGGCTGTTTGTTCTGTTCTTAGAAC 329
Query 300 CCCTCTCGCCAGCATTGATCACATGAGTGTGCAGTTGCCAGATCATGATGCATCTAAGGT 359
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 330 CCCTCTCGCGAGCATTGATCATATGAGTGTGCAGTTGCCAGATCATGATGCATCTAAGGT 389
Query 360 CAAATGGACTTTGCAGTGTTACAGTG 385
||||||||||||||||||||||||||
Sbjct 390 CAAATGGACTTTGCAGTGTTACAGTG 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67369131390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5