BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477838

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05490.1 | Symbols: RALFL22 | ralf-like 22 | chr3:1591277-15...   717    0.0  


> AT3G05490.1 | Symbols: RALFL22 | ralf-like 22 | chr3:1591277-1591983 
FORWARD LENGTH=707
Length=707

 Score =  717 bits (388),  Expect = 0.0
 Identities = 424/441 (96%), Gaps = 3/441 (1%)
 Strand=Plus/Plus

Query  28   GAAGACTCTGATTCACCGAGAAGGTTTCGCCTTAAAGAT---GAACACTCGCGCGATCTA  84
            ||||||||||||||||||||||||||| | |||||||||   ||||||||||||||||||
Sbjct  68   GAAGACTCTGATTCACCGAGAAGGTTTTGGCTTAAAGATGACGAACACTCGCGCGATCTA  127

Query  85   CGCCGTCATCGCGATCCTGGCGATCGTAATCTCAGCCGTCGAATCAACCGGCGACTTCGG  144
            |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct  128  CGCCGTCATCGCGATCCTGGCGATAGTAATCTCAGCCGTGGAATCAACCGGAGACTTCGG  187

Query  145  AGATTCGCTAGATTTCGTGAGAACCGGATCTTCATCGCTCTTCTCTGGATGCACAGGATC  204
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  188  AGATTCGCTAGATTTCGTGAGAGCCGGATCTTCATCGCTCTTCTCTGGATGCACAGGATC  247

Query  205  GATCGCTGAGTGTATAGCCGAAGAAGAAGAGATGGAGTTCGATTCAGAAATCAGCCGGCG  264
            |||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct  248  GATCGCAGAGTGTATAGCGGAAGAAGAAGAGATGGAGTTCGATTCAGACATAAGCCGGCG  307

Query  265  GATATTAGCACAGAAGAAGTACATTAGCTACGGTGCTATGAGGAGGAACAGTGTGCCTTG  324
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  308  TATATTAGCACAGAAGAAGTACATTAGCTACGGTGCTATGAGGAGGAACAGTGTGCCTTG  367

Query  325  TTCACGCCGTGGTGCGTCGTACTACAACTGCCAGCGTGGAGCTCAGGCGAATCCCTACAG  384
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  368  TTCACGGCGTGGTGCGTCGTACTACAACTGCCAGCGTGGAGCTCAGGCGAATCCTTACAG  427

Query  385  CCGTGGATGCAGCACCATTACTAGGTGCAGGCGTTGAAGAAGATGAGTCACTTGAatttc  444
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  428  CCGTGGATGCAGCACCATCACTAGGTGCAGGCGTTGAAGAAGATGAGTCACTTGAATTTC  487

Query  445  ctattttgcccctttcttttt  465
            |||||||||||||||||||||
Sbjct  488  CTATTTTGCCCCTTTCTTTTT  508


 Score = 52.8 bits (28),  Expect = 3e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  1   GTTGTCTTCAGCTGTGTACAGAATCAAG  28
           ||||||||||||||||||||||||||||
Sbjct  1   GTTGTCTTCAGCTGTGTACAGAATCAAG  28



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26272458881


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5