BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477839
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05500.1 | Symbols: | Rubber elongation factor protein (REF... 1685 0.0
> AT3G05500.1 | Symbols: | Rubber elongation factor protein (REF)
| chr3:1593434-1595015 FORWARD LENGTH=1060
Length=1060
Score = 1685 bits (912), Expect = 0.0
Identities = 980/1012 (97%), Gaps = 7/1012 (1%)
Strand=Plus/Plus
Query 1 ATCACCATTGCTTTGTTTTGTTCGTCaaa-aaaaTCAATTTTAAATTTCTTCTCTTCTTC 59
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||
Sbjct 1 ATCACCATTGCTTTGTTTTGTTCGTCAAATATAATCAATTTTAAATTTCTTCTCTTC-TC 59
Query 60 TTCAAACGAATCGCC-TTTTCGATAATCTCTTTGCATCGA-TTCGATCATGGCTACTCAA 117
||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 60 TTCAAACGAATCGCCTTTTTCGATAATCTCTTTGCATCGATTTC-ATCATGGCTACTCAA 118
Query 118 ACGGATCTCGCTCAGCCCAAACTTGATATGACCAAGGAGGAGAAAGAGAGGTTGAAGTAC 177
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACGGATCTCGCTCAGCCCAAGCTTGATATGACCAAGGAGGAGAAAGAGAGGTTGAAGTAT 178
Query 178 TTGCAATTCGTGCAAGCTGCTGCTGTTGAAGCTCTGCTTCGCTTTGCTCTTATTTACGCT 237
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 TTGCAATTCGTGCAAGCTGCTGCTGTGGAAGCTCTGCTTCGCTTTGCTCTTATTTACGCT 238
Query 238 AAGGCAAAGGACAAGTCTGGTCCTTTGAAACCTGGTGTTGAATCTGTTGAAGGAGCTGTC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AAGGCAAAGGACAAGTCTGGTCCTTTGAAACCTGGTGTTGAATCTGTTGAAGGAGCTGTC 298
Query 298 AAGACCGTCGTTGGTCCTGTCTACGAGAAATACCACGACGTCCCTGTTGAGGTCCTTAAA 357
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGACTGTCGTTGGTCCTGTCTACGAGAAATACCACGACGTCCCTGTTGAGGTCCTTAAA 358
Query 358 TACATGGACCAGAAGGTTGATATGTCTGTGACCGAGCTTGACCGTCGTGTCCCACCAGTT 417
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 TACATGGACCAGAAGGTTGATATGTCTGTGACTGAGCTTGACCGTCGTGTCCCACCAGTC 418
Query 418 GTCAAGCAAGTGTCTGCCCAAGCCATCTCAGCTGCTCAGATAGCACCCATTGTGGCCCGT 477
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 419 GTCAAGCAAGTGTCTGCCCAAGCCATCTCCGCTGCTCAGATAGCACCCATTGTGGCACGT 478
Query 478 GCGTTGGCCTCTGAGGTGCGACGTGCTGGTGTTGTTGAAACCGCTTCTGGAATGGCTAAA 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCGTTGGCCTCTGAGGTTCGACGTGCTGGTGTTGTTGAAACCGCTTCTGGAATGGCTAAA 538
Query 538 TCCGTCTACACCAAGTACGAACCTGCTGCTAAGGAGTTGTATGCAAACTATGAGCCAAAA 597
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCCGTCTACTCCAAGTACGAGCCTGCTGCTAAGGAGTTGTATGCAAACTATGAGCCAAAA 598
Query 598 GCAGAGCAATGTGCTGTTTCAGCTTGGAAGAAGCTGAACCAGCTTCCTCTGTTCCCAAGG 657
|||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 599 GCAGAGCAGTGTGCCGTTTCAGCTTGGAAGAAGCTTAACCAGCTTCCTCTATTCCCAAGG 658
Query 658 CTGGCTCAAGTTGCTGTACCAACAGCTGCTTTCTGCTCTGAGAAGTACAATGATACTGTG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTGGCTCAAGTTGCTGTACCAACAGCTGCTTTCTGCTCTGAGAAGTACAATGATACTGTG 718
Query 718 GTTAAGGCTGCAGAGAAAGGGTACAGAGTCACATCGTACATGCCATTGGTTCCAACAGAG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTTAAGGCTGCAGAGAAAGGGTACAGAGTCACATCGTACATGCCATTGGTTCCAACAGAG 778
Query 778 AGGATCTCAAAAATCTTCGCTGAGGAGAAAGCTGAGAACGAGCCTTTGGAGTTCCATCCA 837
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 AGGATCTCAAAAATCTTCGCTGAGGAGAAAGCTGAGACCGAGCCTTTGGAGTTCCATCCA 838
Query 838 CTTGATTGATATGGGTGTTTTGTTAGTGTGATTTATGGTTTTGTTGGGATTATGGTGAAC 897
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 839 CTTGATTGATATGGGTGTTTTGTTAGTGTGATTTTTTGTTTTGTTGGGATTAAGGTGAAC 898
Query 898 CGGATCTTGGTTAGCGATTGATCCCTGGTTCTCGTTCTTTTGttttttttCATCATGAAC 957
||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||
Sbjct 899 CGGATCTTGGTTAGCGATTGATCTCTGGTTCTCGTTCTTTT-TTTTCTTTG-TCATGAAC 956
Query 958 TTTCGTTGTTTCGTTTAATAATCAAAAGTTGTATAATTTAAGTTTGGGATTA 1009
||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 TTTTGTTGTTTCGTTTAATAATCAAAAGTTGTATAATCTAAGTTTGGGATTA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49430400648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5