BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477841
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05520.2 | Symbols: | Subunits of heterodimeric actin filam... 1583 0.0
> AT3G05520.2 | Symbols: | Subunits of heterodimeric actin filament
capping protein Capz superfamily | chr3:1598547-1601437
FORWARD LENGTH=1213
Length=1213
Score = 1583 bits (857), Expect = 0.0
Identities = 945/986 (96%), Gaps = 12/986 (1%)
Strand=Plus/Plus
Query 1 TATCGACGGCGACAATTTCTCTCTCCGGCAAACTTTTATCATAGAGAGGTTAGAGGCAGC 60
||||||||||||||||||||||||||||| ||||||| || | ||| | | | |||
Sbjct 14 TATCGACGGCGACAATTTCTCTCTCCGGCTAACTTTTTTC-T--AGA-G--A-A---AGC 63
Query 61 CATGGCGGATGAAGAAGACGAGTTACCGGAGACAGAGCTAAGTTACGACCAGAAGAAGGA 120
|||||||| |||||||| ||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 64 TATGGCGGACGAAGAAGATGAGTTACTGGAGACAGAACTAAGTTACGACCAGAAAAAGGA 123
Query 121 AATCGCAAAGTGGTTTCTCCTCAACGCTCCCGCCGGAGAAATCAATTACGTCGCTAAAGA 180
|||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 124 AATCGCCAAGTGGTTTTTCCTCAACGCTCCCGCTGGAGAAATCAATTACGTCGCTAAAGA 183
Query 181 TTTAAAGGCGGTTTTGAGCGATGAGGAAGTCTACAATGAAGCAGCCATGGAAGCATTTCC 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 184 TTTAAAGGCGGTTTTGAGCGATGAGGAAGTGTACAATGAAGCAGCCATGGAAGCATTTCC 243
Query 241 AGTGTACAACAAATCTCACATGATTTGCCTTGAAATGCCCAGTAGG-GCTGGTGATGTGA 299
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 244 AGTGTACAACAAAACTCACATGATTTGCCTTGAAATGCCCAGT-GGAGCTGGTGATGTGA 302
Query 300 TTGTCTCAGCTTACAGTGAAATTACTGAAAATGAGTACCTTGATCCAAGAACTGCCCAGG 359
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 303 TTGTCTCATCTTACAGTGAAATTAATGAAAATGAGTACCTTGATCCAAGAACTGCCCAGG 362
Query 360 TTGCCGTAGTTGATCATGTTAAACAGATTTGTACAAAGGTACGGCCTGCAAATGATGAAG 419
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TTGCCATAGTTGATCATGTTAAACAGATTTGTACAAAGGTACGGCCTGCAAATGATGAAG 422
Query 420 AACTTCCGTCTTTGTATATTGAGGAGTACAGATATGCTCTTGATGCTGAAATCCAGAGAT 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AACTTCCTTCTTTGTATATTGAGGAGTACAGATATGCTCTTGATGCTGAAATCCAGAGAT 482
Query 480 ATGTTAGTGAATCTTATCCGAAAGGTATGTGTGCAGTTAATTGTGTGAAGGGGAAAGATA 539
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 483 ATGTTAGTGAATCTTATCCGAAAGGTATGTCTGCAGTTAATTGTGTGAAAGGGAAAGATA 542
Query 540 CTGAGGGTCCAGGGTCCGACTTTGAGCTTGTTGTTATAATTACTGCCATGAGACTTAGTC 599
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 543 ATGAGGGTCCAGGGTCCGACTTTGAGCTTGTTGTTATAATTACTGCTATGAGACTTAGTC 602
Query 600 CCCAGAACTTCTGTAATGGAAGTTGGAGATCTGTATGGAACGTAGATTTCCAGGATGAAT 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 603 CCCAGAACTTCTGTAATGGAAGTTGGAGATCTGTATGGAACATAGATTTCCAGGATGAAT 662
Query 660 CCCAGGTGCTTGACATAAAAGGGAAATTGCAGGTAGGAGCTCATTATTTTGAAGAGGGAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CCCAGGTGCTTGACATAAAAGGGAAATTGCAGGTAGGAGCTCATTATTTTGAAGAGGGAA 722
Query 720 ATGTGGAATTAGATGCaaaaaaaGATTTTCAAGATTCAACAATATTTCAGTCTGCGGATG 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 723 ATGTGGAATTAGATGCAAAAAAAGATTTCCAAGATTCAACAATATTTCAGTCTGCAGATG 782
Query 780 ACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 ACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTC 842
Query 840 TGGAGGTAGCTTATTCAAAATTACCGGATAACACTTTTAAGGATTTGAGGAGGAAACTTC 899
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 843 TAGAGGTAGCTTATTCAAAATTACCGGATAACACTTTCAAGGATTTGAGGAGGAAACTTC 902
Query 900 CGGTGACACGAACTCTGTTCCCATGGCAGAACACTTTACAGTTCAGCCTTACAAGAGAGG 959
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 903 CGGTGACACGAACTCTGTTCCCATGGCAGAACACTTTACAGTTCAGCCTAACAAGAGAGG 962
Query 960 TGGAGAAAGAACTTGGACTAGGCAAG 985
| ||||||||||||||||| ||||||
Sbjct 963 TCGAGAAAGAACTTGGACTTGGCAAG 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5