BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477841 Length=1010 Score E Sequences producing significant alignments: (Bits) Value AT3G05520.2 | Symbols: | Subunits of heterodimeric actin filam... 1583 0.0 > AT3G05520.2 | Symbols: | Subunits of heterodimeric actin filament capping protein Capz superfamily | chr3:1598547-1601437 FORWARD LENGTH=1213 Length=1213 Score = 1583 bits (857), Expect = 0.0 Identities = 945/986 (96%), Gaps = 12/986 (1%) Strand=Plus/Plus Query 1 TATCGACGGCGACAATTTCTCTCTCCGGCAAACTTTTATCATAGAGAGGTTAGAGGCAGC 60 ||||||||||||||||||||||||||||| ||||||| || | ||| | | | ||| Sbjct 14 TATCGACGGCGACAATTTCTCTCTCCGGCTAACTTTTTTC-T--AGA-G--A-A---AGC 63 Query 61 CATGGCGGATGAAGAAGACGAGTTACCGGAGACAGAGCTAAGTTACGACCAGAAGAAGGA 120 |||||||| |||||||| ||||||| ||||||||| ||||||||||||||||| ||||| Sbjct 64 TATGGCGGACGAAGAAGATGAGTTACTGGAGACAGAACTAAGTTACGACCAGAAAAAGGA 123 Query 121 AATCGCAAAGTGGTTTCTCCTCAACGCTCCCGCCGGAGAAATCAATTACGTCGCTAAAGA 180 |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 124 AATCGCCAAGTGGTTTTTCCTCAACGCTCCCGCTGGAGAAATCAATTACGTCGCTAAAGA 183 Query 181 TTTAAAGGCGGTTTTGAGCGATGAGGAAGTCTACAATGAAGCAGCCATGGAAGCATTTCC 240 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 184 TTTAAAGGCGGTTTTGAGCGATGAGGAAGTGTACAATGAAGCAGCCATGGAAGCATTTCC 243 Query 241 AGTGTACAACAAATCTCACATGATTTGCCTTGAAATGCCCAGTAGG-GCTGGTGATGTGA 299 ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 244 AGTGTACAACAAAACTCACATGATTTGCCTTGAAATGCCCAGT-GGAGCTGGTGATGTGA 302 Query 300 TTGTCTCAGCTTACAGTGAAATTACTGAAAATGAGTACCTTGATCCAAGAACTGCCCAGG 359 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 303 TTGTCTCATCTTACAGTGAAATTAATGAAAATGAGTACCTTGATCCAAGAACTGCCCAGG 362 Query 360 TTGCCGTAGTTGATCATGTTAAACAGATTTGTACAAAGGTACGGCCTGCAAATGATGAAG 419 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 TTGCCATAGTTGATCATGTTAAACAGATTTGTACAAAGGTACGGCCTGCAAATGATGAAG 422 Query 420 AACTTCCGTCTTTGTATATTGAGGAGTACAGATATGCTCTTGATGCTGAAATCCAGAGAT 479 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AACTTCCTTCTTTGTATATTGAGGAGTACAGATATGCTCTTGATGCTGAAATCCAGAGAT 482 Query 480 ATGTTAGTGAATCTTATCCGAAAGGTATGTGTGCAGTTAATTGTGTGAAGGGGAAAGATA 539 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 483 ATGTTAGTGAATCTTATCCGAAAGGTATGTCTGCAGTTAATTGTGTGAAAGGGAAAGATA 542 Query 540 CTGAGGGTCCAGGGTCCGACTTTGAGCTTGTTGTTATAATTACTGCCATGAGACTTAGTC 599 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 543 ATGAGGGTCCAGGGTCCGACTTTGAGCTTGTTGTTATAATTACTGCTATGAGACTTAGTC 602 Query 600 CCCAGAACTTCTGTAATGGAAGTTGGAGATCTGTATGGAACGTAGATTTCCAGGATGAAT 659 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 603 CCCAGAACTTCTGTAATGGAAGTTGGAGATCTGTATGGAACATAGATTTCCAGGATGAAT 662 Query 660 CCCAGGTGCTTGACATAAAAGGGAAATTGCAGGTAGGAGCTCATTATTTTGAAGAGGGAA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 CCCAGGTGCTTGACATAAAAGGGAAATTGCAGGTAGGAGCTCATTATTTTGAAGAGGGAA 722 Query 720 ATGTGGAATTAGATGCaaaaaaaGATTTTCAAGATTCAACAATATTTCAGTCTGCGGATG 779 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 723 ATGTGGAATTAGATGCAAAAAAAGATTTCCAAGATTCAACAATATTTCAGTCTGCAGATG 782 Query 780 ACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTC 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 ACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTC 842 Query 840 TGGAGGTAGCTTATTCAAAATTACCGGATAACACTTTTAAGGATTTGAGGAGGAAACTTC 899 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 843 TAGAGGTAGCTTATTCAAAATTACCGGATAACACTTTCAAGGATTTGAGGAGGAAACTTC 902 Query 900 CGGTGACACGAACTCTGTTCCCATGGCAGAACACTTTACAGTTCAGCCTTACAAGAGAGG 959 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 903 CGGTGACACGAACTCTGTTCCCATGGCAGAACACTTTACAGTTCAGCCTAACAAGAGAGG 962 Query 960 TGGAGAAAGAACTTGGACTAGGCAAG 985 | ||||||||||||||||| |||||| Sbjct 963 TCGAGAAAGAACTTGGACTTGGCAAG 988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49480634795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5