BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477844
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05545.1 | Symbols: | RING/U-box superfamily protein | chr3... 2904 0.0
> AT3G05545.1 | Symbols: | RING/U-box superfamily protein | chr3:1609211-1612523
FORWARD LENGTH=1893
Length=1893
Score = 2904 bits (1572), Expect = 0.0
Identities = 1772/1863 (95%), Gaps = 35/1863 (2%)
Strand=Plus/Plus
Query 11 tttt-tt-ttCCTGGGTCTCTCTCTGGTGTGGTGACGATCGAAGAGAGTTCACGGATTCA 68
|||| || ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 22 TTTTCTTCTTCCTGGGTCTCTCTCT-G-GTGGTGACGATCGAAGAGAGTTCACGGATTCG 79
Query 69 TAGTAGGATTAAATAAATCATTCTGGTAATTTAATCGAAGCGTAAGGAATTCGGGAGAGT 128
|| |||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 80 TACAAGGATTAAATTAATTATTCTGGTAAATTAATCGAAGCGTAAGGAATTGGGGAGAGT 139
Query 129 GA-TTTT-TGGGTTCGAATTTTTGTGGTTGATTCaaaaaaaaaGAAGGGTTTTGAGATTT 186
|| |||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 140 GATTTTTCTGGGTTCGAA-TTTGGTGGTTGATTCAAAAAAAAAAAAGGGTTTTGAGATTT 198
Query 187 GGGTTGTTTTGATTTCG-ATTTTGGTTATGGGTTTAGGTAATAAGGGTAACAAATTCAAT 245
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 199 GGGTTATTTTGATTTCGAATTTTGGTTATGGGTTTAGGCAATAAGGGTAACAAATTCAAT 258
Query 246 TTCGGCGATAATGATCTCGCCGACGAAGGTAGTGCTGCCGATGGCGATTCTCGCGACGAA 305
|||||||||||||||||||||||||||| ||||| ||||||| | ||||||||
Sbjct 259 TTCGGCGATAATGATCTCGCCGACGAAGCTAGTGGTGCCGAT---G------GCGACGAA 309
Query 306 GGTGATGGTTTTGGTTCTGTTGCGTGTTCGATTTGTCTCGAGACGGTTGTTAAAAACGGC 365
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGTGATGGTTTTGGTTCGGTTGCGTGTTCGATTTGTCTCGAGACGGTTGTTAAAAACGGC 369
Query 366 GATCGAGCTTGGGCTAATCTTCAATGTGACCATCAGTTCCATCTTGATTGTATTGGTTCT 425
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 370 GATCGAGCATGGGCTAATCTTCAATGTGACCATCAGTTCCATCTAGATTGTATTGGTTCG 429
Query 426 GCTTTCAATGCAAAGGGAGTGATGCAATGCCCCAACTGTCGGAAAGTAGAAAAAGGCCAG 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GCTTTCAATGCAAAGGGAGTGATGCAATGCCCCAACTGTCGGAAAGTAGAAAAAGGCCAG 489
Query 486 TGGCTTTATGCAAATGGTTGCCGTACATATCCTGAATTCAGTGTCGAGGATTGGGTTCAC 545
|||||||||||||| ||||| ||| ||||||| ||||||| |||||||||||||||||||
Sbjct 490 TGGCTTTATGCAAACGGTTGTCGTTCATATCCCGAATTCAATGTCGAGGATTGGGTTCAC 549
Query 546 GAAGAAGATATTTATGATATTGGAGCATACTCTGAATTGTCTTTTGGAGTTCACTGGTGC 605
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 550 GAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGTCTTTTGGAGTTCACTGGTGC 609
Query 606 CCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAGGATGGAGAATTTTCGCCGAGTTCA 665
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 610 CCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAGGATGGAGAATTTTCACCGAGTTCA 669
Query 666 TATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACTGCAGGT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 670 TATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACCGCAGGT 729
Query 726 CATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCATTCGTCTTCCTCAAGCAGTGGT 785
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 730 CATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCACTCGCCTTCCTCAAGCAGTGGT 789
Query 786 GGTGCTGCAGGCGTTTCAGACAGTTCAAGTTTCAGTAGTCACTGGAACACTGGCTCTTCG 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GGTGCTGCAGGCGTTTCAGACAGTTCAAGTTTCAGTAGTCACTGGAACACTGGCTCTTCG 849
Query 846 GTTTCTGGTGAAGTCCCAACTCCATATGGTTTCCCTGTGGATCCGCACTATCACGGCTGG 905
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 850 GTTTCTGGTGAAGTCCCAACTCCTTATGGTTTCCCTGTGGATCCGCACTATCACGGCTGG 909
Query 906 GATTATCACCCGCCTCCACCCCCACCGCCACAGCATTTCTCTGCTTCTGGCCCTCATGTG 965
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 910 GATTATCATCCGCCTCCACCCCCACCGCCACAGCATTTCTCTGCTTCTGGCGCTCATGTG 969
Query 966 GGTAGTCCAACTCAGCCCACGCCTCCACCAGCTGCTGCGAGGACTTCTCGAGCCAACGGT 1025
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 970 GGCAGTCCAACTCAGCCCACGCCTCCACCAGCCGCTGCGAGGACTTCTCGAGCCAACGGC 1029
Query 1026 TCAGATGTGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGTTCC 1085
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TCAGATATGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGTTCC 1089
Query 1086 AGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGC 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGC 1149
Query 1146 AACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAAGCGTATTACCAACAGTCTTCTGCA 1205
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1150 AACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAAGCCTATTACCAACAGTCTTCTGCA 1209
Query 1206 CAGTCACACCAGCCGGATTCGCCTATAGTCTCTCGAGGACCTGTATTCCCGTCTGGCCGG 1265
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1210 CAGTCACACCAGCCGGATTCGCCTATAGTCTCTCGAGGGCCTGTATTCCCATCTGGCCGG 1269
Query 1266 AGGCCCGCTAGAGGAATAGCTTCCGGGATGGGATCAACATCATCTTCTTCGGATCAGGCA 1325
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1270 AGGCCCGCTAGAGGAATAGCTTCAGGGATGGGATCAACGTCATCTTCTTCAGATCAGGCA 1329
Query 1326 GGCGGGAGTGGTTTTATCCGGTTTAACATATGGGAGAGAGATCCTTATATGCAATCACAA 1385
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 GGTGGGAGTGGTTTTATCCGGTTTAACATATGGGAGAGAGATCCTTATATGCAATCACAA 1389
Query 1386 CAAGCCTACTCGATTAATCAGATGGACAGAGAACCAAACATTTGGACATCTTCATTTAAC 1445
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 CAAGCCTACTCGGTTAATCAGATGGACAGAGAACCAAACATTTGGACATCTTCATTTAAT 1449
Query 1446 GAAGGATCAGGAAGCTTCCATCAGAGGCACGGTGGCGGAGGAGGATCATCGTAAGAACTG 1505
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1450 GAAGGATCAGGAAGCTTCCATCAGAGGCACGGTGGCGGAGGAGGATCATCTTAAGAACTG 1509
Query 1506 AGTCAGTACCCGT-CGAGATTCTCACCGGTCGGGCAATTCTCATGATGGACACAAATCaa 1564
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1510 AGTCAGTACCCGTTCGAGATTCTCACCGGTCGGGCAATTCTCATGATGGACA-AAA--AA 1566
Query 1565 aaaaagaaaaaaaaaaaaaaaCATTGGGAATTTGATATTTGAGAAAACCTGAAAA-CTGC 1623
||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1567 CCAAA-AAAAGAAAAAAAAAACATTGGGAATTTGATATTTGAGAAAACCTGAAAAACTGC 1625
Query 1624 ATGCTCAAGTTATGTGATGAATTGATAATCTAAAAACACAAAATGGTATGTAATGGTTTG 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626 ATGCTCAAGTTATGTGATGAATTGATAATCTAAAAACACAAAATGGTATGTAATGGTTTG 1685
Query 1684 GAGAGAGACTGCCTCCCCCGCGTTGGTGGTGTGACC---GTGCGGTTCGAGGTCTGGTT- 1739
||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
Sbjct 1686 GAGAGAGACTGCCTCCCCCA-GTCGGTGGTGTGACCCCCGTGCGGTTCGAGGTCTGGGTA 1744
Query 1740 TGAATCGGGGGAGCGAAAGAGGTCGTTGGGTATTTGTTTTTTAATGTGGCGACAATGGGT 1799
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1745 TGAATCGGGGGAGCGAAAGAGGTCTTTGGGTATTTGTTTTTTAATGTGGCGACATTGGGT 1804
Query 1800 ATCAAAGTGATGAAGTACCCTAATGAAACTTT-TTTC--CTATCTGGTTTTGTTAAATTC 1856
||| |||| || ||||||||||||||||| |||| |||||||||| |||||||||
Sbjct 1805 ATCCAAGTTAT----TACCCTAATGAAACTTTCTTTCTTCTATCTGGTTATGTTAAATTT 1860
Query 1857 TAA 1859
|||
Sbjct 1861 TAA 1863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92017598985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5