BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477850
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05590.1 | Symbols: RPL18 | ribosomal protein L18 | chr3:162... 1157 0.0
AT5G27850.1 | Symbols: | Ribosomal protein L18e/L15 superfamil... 682 0.0
> AT3G05590.1 | Symbols: RPL18 | ribosomal protein L18 | chr3:1621457-1623014
FORWARD LENGTH=857
Length=857
Score = 1157 bits (626), Expect = 0.0
Identities = 678/704 (96%), Gaps = 0/704 (0%)
Strand=Plus/Plus
Query 1 ATGTACAAGGTCGGCGGTTCCAGCACCACAACGCCGGACGACAATGGGTATTGATCTGAT 60
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 12 ATGTAGAAGGTCGGCGGTTCCATCACCACAACGCCGGACGACAATGGGTATTGATCTGAT 71
Query 61 CGCCGGAGGTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAGTCTGATGATGTCTACCT 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 CGCCGGAGGTAAGAGTAAGAAGACCAAAAGGACAGCTCCAAAGTCTGATGATGTCTACCT 131
Query 121 CAAGCTTACTGTCAAGCTTTACCGGTTTCTGGTAAGGAGAACTCAGAGCAAGTTCAATGC 180
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 132 CAAGCTTACTGTCAAGCTTTACCGGTTTCTGGTAAGGAGAACTAATAGCAAGTTCAATGG 191
Query 181 TGTGATATTGAAGAGGCTCTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTTTCTAG 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 192 TGTGATATTGAAGAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCTCTATCTAG 251
Query 241 GCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCTGTCTTGGTTGGAACTGTTAC 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||
Sbjct 252 GCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCCGTCTTGGTTGGAACTATAAC 311
Query 301 TGATGATTTGAGGGTACACGAGATTCCAGCAATGAAAGTGACTGCCCTGAGATTCACAGA 360
|||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 312 TGATGATTTGAGGGTACACGAGATTCCAGCCATGAAAGTGACTGCCTTGAGGTTCACAGA 371
Query 361 GAGAGCTAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGC 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GAGAGCAAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCTTAACCTTTGACCAGCTCGC 431
Query 421 TCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAGGACCTAAGAATTCACGTGA 491
Query 481 AGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 AGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTCACTCCAAGCCATATGT 551
Query 541 GCGGGGCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAGGAGGAAGAGTCGTGGATTCAA 600
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 552 TCGGGCCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAAGAGGAAGAGTCGTGGATTCAA 611
Query 601 GGTTTAAGAAAGTTGTTGCTGCCATTGGACTTGATTTTGGAGTATTGTCGCTTCTTGGTT 660
||||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||||||
Sbjct 612 GGTTTAAGAAAGTTGTTGCCGCCATTGGACTTGATTCTGGAGTACTGTTGCTTCTTGGTT 671
Query 661 GCTTGTGTAATCGGGTTTTTGTTAGAGAACTCTGCTTTTTCTTT 704
|||| ||||||||| |||||||||| |||||||| |||||||||
Sbjct 672 GCTTTTGTAATCGGATTTTTGTTAGGGAACTCTGTTTTTTCTTT 715
> AT5G27850.1 | Symbols: | Ribosomal protein L18e/L15 superfamily
protein | chr5:9873152-9874598 FORWARD LENGTH=882
Length=882
Score = 682 bits (369), Expect = 0.0
Identities = 508/576 (88%), Gaps = 5/576 (1%)
Strand=Plus/Plus
Query 44 ATGGGTATTGATCTGATCGCCGGAGGTAAGAGCAAGAAGACCAAAAGGACAGCTCCAAAG 103
|||||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct 18 ATGGGTATCGATCTTATCGCAGGAGGTAAGAGTAAGAAGACCAAAAGGACTGCTCCTAAG 77
Query 104 TCTGATGATGTCTACCTCAAGCTTACT-GTCAAGCTTTACCGGTTTCTGGTAAGGAGAAC 162
|| |||||||||||||| |||||| || |||||||||||||||||| |||| |||||| |
Sbjct 78 TCCGATGATGTCTACCTAAAGCTT-CTCGTCAAGCTTTACCGGTTTTTGGTGAGGAGATC 136
Query 163 TCAGAGCAAGTTCAATGCTGTGATAT-TGAAGAGGCTCTTCATGAGCAAAGTCAACAAAG 221
| | ||||| |||||||||||||| | |||| ||||| ||||||||||||||||||||||
Sbjct 137 TAACAGCAACTTCAATGCTGTGAT-TCTGAAAAGGCTTTTCATGAGCAAAGTCAACAAAG 195
Query 222 CTCCTCTTTCTCTTTCTAGGCTTGTGGAGTTCATGACTGGCAAGGAAGATAAGATTGCTG 281
|||||||||| || ||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 196 CTCCTCTTTCACTCTCTAGGCTTGTAGAGTTCATGACTGGCAAGGATGACAAGATTGCTG 255
Query 282 TCTTGGTTGGAACTGTTACTGATGATTTGAGGGTACACGAGATTCCAGCAATGAAAGTGA 341
| |||||||||||| | |||||||||||||| || || |||||||| || ||||| || |
Sbjct 256 TGTTGGTTGGAACTATCACTGATGATTTGAGAGTTCATGAGATTCCTGCCATGAAGGTTA 315
Query 342 CTGCCCTGAGATTCACAGAGAGAGCTAGGGCTCGCATTGAGAAAGCTGGAGGTGAATGCT 401
||||| |||| || || ||||| ||||||||| | |||||||||||||| || || ||||
Sbjct 316 CTGCCTTGAGGTTTACTGAGAGGGCTAGGGCTAGAATTGAGAAAGCTGGTGGAGAGTGCT 375
Query 402 TAACCTTTGACCAGCTCGCTCTCAGAGCTCCATTGGGCCAGAACACGGTTCTTCTTAGAG 461
|||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 376 TAACCTTTGACCAGCTTGCTCTCAGAGCTCCATTGGGACAGAACACAGTTCTTCTTAGAG 435
Query 462 GACCTAAGAATTCACGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACA 521
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GACCAAAGAACTCGCGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACA 495
Query 522 GTCACTCCAAGCCATATGTGCGGGGCAAGGGAAGGAAGTTCGAGAAGGCCAGAGGAAGGA 581
|| || | ||||||||||| || |||||||||||||| ||||| || ||||||| |
Sbjct 496 GTAACACTAAGCCATATGTTAGGCATAAGGGAAGGAAGTTTGAGAAAGCTAGAGGAAAGC 555
Query 582 GGAAGAGTCGTGGATTCAAGGTTTAAGAAAGTTGTT 617
| |||||||||||||||||||| |||||| | ||||
Sbjct 556 GAAAGAGTCGTGGATTCAAGGTCTAAGAA-GATGTT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5