BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477851
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05610.1 | Symbols: | Plant invertase/pectin methylesterase... 3382 0.0
> AT3G05610.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:1625672-1628173 REVERSE LENGTH=2411
Length=2411
Score = 3382 bits (1831), Expect = 0.0
Identities = 2236/2423 (92%), Gaps = 61/2423 (3%)
Strand=Plus/Plus
Query 1 ACACTCCTAAGGAGGCTACGTAACCTTCGACGGAGGAGTCCATAAAACTCACATTTTCA- 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ACACTCCCAAGGAGGCTACGTAACCTTCGACGGAGGAGTCCATAAAACTCACATTCTCAT 60
Query 60 --TTTTCTCAAAAGAACAACGAACAGCTCTAATA-TTTTTTACAATAATTCTTCAGAGCT 116
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 61 TTTTTTCTCAAAAGAACAACGAACAGCTCTTATATTTTTTTACAATAATTCTTCAGAGCT 120
Query 117 GTTCAAGTTCAACAACAATTTGATTTAGAGAAGACAAAACAAATATTAATCATTGTAACG 176
||| ||||||||||||||||||||| |||||| || | | |||||||||| | |||||||
Sbjct 121 GTTTAAGTTCAACAACAATTTGATTAAGAGAAAACCACATAAATATTAATTAGTGTAACG 180
Query 177 AAAAACAC-AAACAATTATGTCGTACGGATACGACGATGAAGCCAAGAGGAAGAGGAGGT 235
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AAAAACACAAAACAAATATGTCGTACGGATACGACGATGAATCCAAGAGGAAGAGGAGGT 240
Query 236 ATGTTGTTATCACCATCTCCTCTGTTCTTCTGATCTCGATGGTAGTCGCGGTTACCGTTG 295
| |||||||||||||||||||||||||| ||||||||||||| || |||||||||||||
Sbjct 241 ACATTGTTATCACCATCTCCTCTGTTCTTTTGATCTCGATGGTGGTTGCGGTTACCGTTG 300
Query 296 GTGTCAGCCTCAATAAGAATGACGGTGACTCCGAAGGTAAAGGAGAGATAACA-GCTTCC 354
||||||||||||||||| ||||||||||||| ||||||||| |||| ||| | ||||||
Sbjct 301 GTGTCAGCCTCAATAAGCATGACGGTGACTCTAAAGGTAAAGCAGAGGTAA-ATGCTTCC 359
Query 355 GTCAAGGCCGTGAAGGATGTTTGTGCACCAACTGATTACAGAAAGACTTGTGAAGACACT 414
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTCAAGGCCGTCAAGGATGTTTGTGCACCAACTGATTACAGAAAGACTTGTGAAGACACT 419
Query 415 CTGATTAAGAACGGGAAGAACACAACCGACCCGATGGAGTTGGTTAAGACTGCGTTTAGT 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 420 CTGATTAAGAACGGGAAGAACACAACCGACCCGATGGAGTTGGTTAAGACTGCGTTTAAT 479
Query 475 GTTACGATGAAGCAGATCACGGACGCAGCTAAGAAGTCGCAGACGATGATGGAGCTTCAG 534
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GTTACGATGAAGCAGATCACGGACGCAGCTAAGAAGTCGCAGACGATTATGGAGCTTCAG 539
Query 535 AAGGATCCAAGGACAAGGATGGCGCTTGATCAGTGCAAGGAGCTTATGGATTACGCGTTG 594
|||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 AAGGATTCAAGGACTAGGATGGCGCTTGATCAATGCAAGGAGCTTATGGATTACGCGTTG 599
Query 595 GGTGAGCTAAGTAACTCTTTCGAGGAGCTTGGAAAATTTGAGTTCCACTTGCTCGACGAA 654
| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 GACGAACTAAGTAACTCTTTCGAGGAGCTTGGAAAATTTGAGTTCCACCTGCTCGACGAG 659
Query 655 GCTCTGATCAATCTGAGGATTTGGCTCAGCGCGGCAATCAGCCACGAGGAGACTTGTCTT 714
||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 660 GCTTTGATCAATCTGAGGATTTGGCTTAGCGCAGCGATCAGCCACGAGGAGACTTGTCTT 719
Query 715 GAAGGGTTTCAAGGAACGCAAGGGAATGCAGGAGAGACAATGAAAAAAGCGTTGAAGACC 774
||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 720 GAAGGGTTTCAAGGAACACAAGGGAATGCTGGAGAGACAATGAAGAAAGCGTTGAAGACT 779
Query 775 GCAATCGAGTTGACCCACAACGGGCTAGCGATCATCAGCGAAATGTCGAATTTTGTTGGC 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCAATCGAGTTGACCCACAACGGGCTAGCGATCATCAGCGAAATGTCGAATTTTGTTGGC 839
Query 835 CAAATGCAGATTCCAGGGCTGAACAGCCGCCGACTTTTGGCCGAAGGATTCCCTTCGTGG 894
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 840 CAAATGCAGATTCCGGGGCTGAACAGTCGTCGACTTTTGGCTGAAGGATTCCCTTCGTGG 899
Query 895 TTAGACCAGCGTGGGCGTAAACTCCTGCAAGCTGCTGCCGCATATTCCGATGTGAAGCCT 954
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 900 GTAGACCAGCGTGGGCGTAAACTCCTACAAGCTGCTGCCGCATATTCCGATGTGAAGCCT 959
Query 955 GATATTGTGGTTGCCCAGGACGGGAGCGGTCAATACACGACGATCAATGAAGCGTTGCAG 1014
||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 GATATTGTGGTGGCACAGGACGGGAGCGGTCAATACAAGACGATCAATGAAGCGTTGCAG 1019
Query 1015 TTTGTCCCCAAGAAGAAGAACACAACTTTCGTGGTTCACATTAAGGCTGGACTATACAAG 1074
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1020 TTTGTCCCCAAGAAGAGGAACACAACTTTCGTGGTTCACATTAAGGCTGGACTCTACAAG 1079
Query 1075 GAGTATGTTCAGGTGAACAAGAGCATGACGCATCTTGTGTTCATCGGTGATGGTCCCGAC 1134
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1080 GAGTATGTTCAGGTGAACAAGACCATGTCGCATCTTGTGTTCATCGGTGATGGTCCCGAC 1139
Query 1135 AAAACCATCATTTCCGGAAATAAGAATTACAAGGATGGTATCACCACCTACCGTACCGCC 1194
||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAAACTATCATTTCCGGCAACAAAAATTACAAGGATGGTATCACCACCTACCGTACCGCC 1199
Query 1195 ACTGTCGCCATTGTTGGAAACTACTTCATTGCCAAGAACATCGGGTTTGAAAACACCGCT 1254
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1200 ACTGTCGCCATTGTTGGAAACTACTTCATTGCCAAGAACATTGGGTTCGAAAACACCGCT 1259
Query 1255 GGGGCAATAAAACATCAAGCGGTTGC-GCTTAGAGTTCAATCGGATGAGTCGATATTTTT 1313
|||||||||||||||||||||||||| | |||| |||||||| |||||||| ||||||||
Sbjct 1260 GGGGCAATAAAACATCAAGCGGTTGCAG-TTAGGGTTCAATCAGATGAGTCCATATTTTT 1318
Query 1314 CAATTGTAGATTCGATGGCTACCAAGACACGCTCTACACTCACTCCCACCGTCAGTTCTT 1373
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CAACTGTAGATTCGATGGCTACCAAGACACGCTCTACACTCACTCCCACCGTCAGTTCTT 1378
Query 1374 CCGTGATTGTACCATTTCAGGCACAATTGATTTCCTTTTTGGAGATGCAGCTGCTGTATT 1433
|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1379 CCGTGATTGTACCATTTCAGGCACCATTGATTTCCTCTTTGGAGATGCGGCTGCTGTATT 1438
Query 1434 CCAAAACTGTACTTTGTTGGTGAGGAAGCCACTCCCTAACCAAGCATGCCCGATCACAGC 1493
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1439 CCAAAACTGTACGTTGTTGGTGAGGAAGCCACTCCCAAACCAAGCATGCCCTATCACAGC 1498
Query 1494 CCACGGTCGTAAAGACCCAAGGGAAGTT-ACCGGATTTGTGTTCCAAGGATGCACCATTG 1552
||||||||| ||||||||||||||| | || ||||||||||||||||| ||||||||||
Sbjct 1499 CCACGGTCGAAAAGACCCAAGGGAA-TCCACTGGATTTGTGTTCCAAGGGTGCACCATTG 1557
Query 1553 CCGGTGAACCAGATTACTTGGCAGTCAAGGAAACCAGCAAAGCCTATCTTGGTAGGCCAT 1612
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1558 CCGGTGAACCAGATTACTTGGCTGTCAAGGAAACCAGCAAAGCCTATCTCGGTAGGCCAT 1617
Query 1613 GGAAGGAATATTCAAGGACTATCATCATGAACACTTTCATCCCAGATTTTGTTCAGCCAC 1672
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1618 GGAAGGAATATTCAAGGACTATCATCATGAACACTTTCATCCCAGATTTTGTTCAGCCTC 1677
Query 1673 AAGGATGGCAACCATGGCTCGGTGATTTCGGCCTCAAGACATTATTTTACTCTGAGGTCC 1732
|||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||
Sbjct 1678 AAGGATGGCAACCATGGCTCGGGGACTTCGGCCTCAAGACATTGTTCTACTCTGAGGTCC 1737
Query 1733 AAAACACCGGACCGGGATCCGCCCTTGCAAACCGGGTTACATGGGCTGGAATCAAGACAC 1792
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1738 AAAACACAGGACCGGGATCCGCCCTTGCAAACCGGGTTACTTGGGCTGGAATCAAGACAT 1797
Query 1793 TGAGCGACGAAGATATCCTCAAGTTCACACCGGCTCAGTACATCCAAGGTGAT-ACTTGG 1851
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1798 TGAGCGAAGAAGATATCCTCAAGTTCACACCGGCTCAGTACATCCAAGGTGACGACT-GG 1856
Query 1852 GTTCCAGGCAAAGGTGTTCCGTACACTCCAGGCCTTTTGGCTGGGAACCCGGCCGCTGCG 1911
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1857 ATTCCAGGCAAAGGTGTTCCGTACACTACAGGCCTTTTGGCTGGGAACCCGGCCGCTGCA 1916
Query 1912 ACCACCACCCCGAGCGGCTCAGCTGCT-C-C-AGGTTTCTCCACCTTCACGGATACAAGT 1968
||||||||||| |||| |||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1917 ACCACCACCCCAAGCGTCTCAGCTGCTGCTCCAGGTTTCTCCACCTTCACGGATACAAGT 1976
Query 1969 GGCGCTGACTCGATTGCTCCAGCAGCTTCCCCGGAAAGTTCACTTGCTCCGGAAAGTTCG 2028
||||||||||| ||||||||| |||||||||| | | | | || | |||||||||||
Sbjct 1977 GGCGCTGACTCAATTGCTCCAACAGCTTCCCCAGCA-G--C--TTCC-CCGGAAAGTTCA 2030
Query 2029 ATTAAG-ATAGCTT-CATCGGAAACGGCTTCCCCAGAAAGTTCGATTAAGGTGGCTTC-- 2084
|||| | || |||| || ||| || ||||| || |||||||||||||||||| ||||
Sbjct 2031 ATTA-GCATGGCTTACA-CGGGGACAGCTTCTCCGGAAAGTTCGATTAAGGTGTCTTCTT 2088
Query 2085 -AACGGAGACGGCTTCCCCAGAAAGTTCAATTAAGGTGGCTTCAACGGAGACTGCTTCCC 2143
|||||||||||||||||| ||||||||| ||| || ||||||||||| || | |||
Sbjct 2089 CAACGGAGACGGCTTCCCCGGAAAGTTCATTTACGGAGGCTTCAACGG---CT--T-CCC 2142
Query 2144 CGGAAAGTTCAATCAAGGTGGCTTCAACGGAGAGCTCTGTTTCGATGGTTTCAATGTCTA 2203
| ||||||||||| | ||||||||||||||||||||||| |||| | ||||||||| ||
Sbjct 2143 CAGAAAGTTCAATTATGGTGGCTTCAACGGAGAGCTCTGGTTCGTTTTTTTCAATGTTTA 2202
Query 2204 CCTAAAAAATTGATTAAGATGCCATATAATGTGttttttttCTTACTCTAATTCAAG-AA 2262
||||||| ||||||||||||| |||| |||||||||||| | ||||||||||||||| ||
Sbjct 2203 CCTAAAAGATTGATTAAGATGGCATAAAATGTGTTTTTTCT-TTACTCTAATTCAAGCAA 2261
Query 2263 AA--T--------------T----GCACAACCTTGAGGACTTCAGGATTATTGGTCTTCC 2302
|| | | ||||||||||||||||||||||||||||||| ||||
Sbjct 2262 AACCTGAAAGGAACAAAAATATTTGCACAACCTTGAGGACTTCAGGATTATTGGTATTCC 2321
Query 2303 AAATTGTTGGGATTAATGTTTTAGATTTGTAAACTCATGTTTAATAT-TGCAGTATATTA 2361
||||||||| |||||||||| || |||||||||||||||||||||| | ||||||||||
Sbjct 2322 AAATTGTTGACATTAATGTTT-AGCTTTGTAAACTCATGTTTAATATAT-CAGTATATTA 2379
Query 2362 AAAATGTTGTTTATAAATCTATT 2384
||| || ||||||||||||||||
Sbjct 2380 AAA-TGCTGTTTATAAATCTATT 2401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118423085655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5