BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477852
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05620.1 | Symbols: | Plant invertase/pectin methylesterase... 2475 0.0
> AT3G05620.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:1629658-1631766 REVERSE LENGTH=1632
Length=1632
Score = 2475 bits (1340), Expect = 0.0
Identities = 1538/1633 (94%), Gaps = 16/1633 (1%)
Strand=Plus/Plus
Query 13 GGATTTCTCACCGCTCTTCTCTTAGCTATGCTTATGTTTGTTCACACTTACTCGTATGAA 72
||||| | ||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 5 GGATTAC-CACCGCTCTTCTCTTAGTTATGCTTATGTCCGTTCACACTTCCTCGTATGAA 63
Query 73 ACCACAGTTTTCAAACCGTACATAGAAGAAAAGTTTCGGTCTCTTGTCGCGAAAGCGTGC 132
|||||| |||| ||||| |||| |||||| || ||||||||||||||||||||||| |||
Sbjct 64 ACCACAATTTTAAAACCATACAAAGAAGATAACTTTCGGTCTCTTGTCGCGAAAGCATGC 123
Query 133 CAATTTATTGATGCTCACGAGTTGTGCGTCTCTAACATCCGGACGCACATCAAGGAATCG 192
|||||||| |||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 124 CAATTTATCGATGCTCACGAGTTGTGCGTCTCTAACATCTGGACACACGTCAAGGAATCG 183
Query 193 GGTCACGGATT-AACTCCGCATTCGGTTTTAAGCGCTGCAGTAAAGGAAGCACATGACAA 251
|||||||| || ||| ||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 184 GGTCACGGGTTAAAC-CCGCATTCGGTTTTACGTGCTGCGGTAAAGGAAGCACATGACAA 242
Query 252 AGCGAAGTTAGCAATGGAAGGAATCCCAACGGT-ATCGACGTTATCTATCCGTTCGCGTG 310
||| ||||||||||||||| ||||||||||||| || || ||||||||||||||||||||
Sbjct 243 AGCCAAGTTAGCAATGGAAAGAATCCCAACGGTAAT-GATGTTATCTATCCGTTCGCGTG 301
Query 311 AGCAAGTTGCCATAGAGGATTGCAAAGAGCTTGTAGGCTTCTCGGTAACGGAGCTAGCAT 370
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 302 AGCAAGTTGCCATAGAGGATTGCAAAGAGCTTGTAGGCTTCTCGGTAACAGAGCTAGCAT 361
Query 371 GGTCGATGCTGGAGATGAACAAACTCCACGGAGGAGGAGGAATAGA--T-G--G-TGGCT 424
|||||||||||||||||||||||||||| ||||||||||||||||| | | | |||||
Sbjct 362 GGTCGATGCTGGAGATGAACAAACTCCATGGAGGAGGAGGAATAGATCTAGACGATGGCT 421
Query 425 CTCATGACGCTGCTGCTGCAGGAGGCAATCTTAAAACCTGGCTCAGCGCGGCTATGAGTA 484
|||| || |||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 422 CTCACGATGCTGCTGCAGCAGGAGGCAATCTTAAAACCTGGCTTAGCGCGGCCATGAGTA 481
Query 485 ACCAAGACACGTGTCTAGAAGGGTTTGAAGGAACAGAGAGAAAGTACGAGGAATTGATCA 544
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 482 ACCAAGACACGTGTCTAGAAGGGTTTGAAGGAACAGAGAGGAAGTACGAGGAATTGATCA 541
Query 545 AAGGTAGCTTAAGACAAGTCACTCAGCTTGTGAGCAACGTCTTAGACATGTATACGCAGC 604
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 542 AAGGTAGCTTAAGACAAGTCACTCAGCTTGTGAGCAATGTCTTAGACATGTACACGCAGC 601
Query 605 TTAATGCCTTGCCTTTCAAGGCATCTAGGAATGAGAGCTTCACCGCAAGCCCTGACTGGC 664
| ||||||||||||||||||||||||||||| |||||| ||| |||||| ||||| ||||
Sbjct 602 TCAATGCCTTGCCTTTCAAGGCATCTAGGAACGAGAGCGTCATCGCAAGTCCTGAGTGGC 661
Query 665 TCACGGAGACCGATGAGAGCCTCATGATGCATCATGACCCCAGTG-CGATGCACCCAAAC 723
||||||||||||| |||||||||||||||| |||||||||||||| | ||||| ||||||
Sbjct 662 TCACGGAGACCGACGAGAGCCTCATGATGCGTCATGACCCCAGTGTC-ATGCATCCAAAC 720
Query 724 ACGGTTGTGGCGATAGATGGAAAAGGGAAGTATCGGACGATCAATGAGGCCATCAACGAG 783
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 721 ACGGTTGTGGCGATAGATGGAAAAGGGAAGTATCGGACAATTAATGAGGCCATCAACGAG 780
Query 784 GCTCCTAATCATAGCACAAAGCGATATGTCATATATGTGAAGAAAGGTGTGTATAAAGAA 843
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 781 GCTCCTAATCATAGCACAAAGCGATATGTTATATATGTTAAGAAAGGTGTGTATAAAGAA 840
Query 844 AATATTGATTTGAAGAAGAAGAAGACGAACATTATGCTTGTTGGTGACGGTATCGGACAG 903
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 841 AATATTGATTTGAAGAAGAAGAAGACGAACATTATGCTTGTTGGTGACGGAATAGGACAG 900
Query 904 ACTATTATTACCGGTGACCGGAATTTCATGCAGGGTCTTACCACATTCCGAACTGCAACC 963
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 ACGATTATTACCGGTGACCGGAATTTCATGCAGGGTCTTACGACATTCCGAACTGCAACC 960
Query 964 GTCGCTGTTTCCGGAAGAGGATTCATAGCAAAGGACATAACATTCAGAAACACGGCTGGG 1023
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 961 GTTGCTGTTTCCGGAAGAGGATTCATTGCAAAGGACATAACATTCAGAAACACGGCTGGT 1020
Query 1024 CCGCAAAACCGTCAAGCTGTCGCATTGAGGGTTGACTCCGACCAATCCGCCTTCTATCGA 1083
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1021 CCGCAAAACCGTCAAGCTGTCGCATTGAGGGTTGATTCTGACCAATCCGCCTTCTATCGA 1080
Query 1084 TGTAGCGTGGAAGGTTATCAAGACACTCTTTACGCCCATTCCCTCCGTCAGTTCTATAGA 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TGTAGCGTGGAAGGTTATCAAGACACTCTTTACGCCCATTCCCTCCGTCAGTTCTATAGA 1140
Query 1144 GATTGTGAAATTTATGGTACCATTGATTTCATATTCGGAAATGGCGCTGCGGTTTTACAG 1203
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 1141 GATTGTGAAATTTATGGTACGATTGATTTCATATTCGGAAACGGCGCCGCGGTTTTACAA 1200
Query 1204 AATTGTAAAATCTACACACGGGTTCCGTTACCGCTCCAGAAGGTAACGATAACCGCGCAA 1263
|| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1201 AACTGTAAAATCTACACTCGGGTCCCGCTACCGCTCCAGAAGGTAACGATAACCGCGCAA 1260
Query 1264 GGAAGAAAAAG-CCGTAATCAAAATACAGGGTTCGTAATCCAGAACAGTTACGTGTTGGC 1322
||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1261 GGAAGAAAAAGTCCA-AATCAAAATACAGGGTTCGTAATCCAGAACAGTTACGTGCTGGC 1319
Query 1323 TACACAACCTACTTATCTTGGCCGGCCATGGAAACTTTACTCAAGAACGGTTTACATGAA 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TACACAACCTACTTATCTTGGCCGGCCATGGAAACTTTACTCAAGAACGGTTTACATGAA 1379
Query 1383 CACTTACATGAGCCAGCTGGTCCAACCCAGAGGATGGCTTGAATGGTTTGGCAACTTTGC 1442
|||||||||||||||| ||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1380 CACTTACATGAGCCAGTTGGTCCAACCCAGAGGATGGCTTGAGTGGTTTGGTAATTTTGC 1439
Query 1443 TTTGGACACTTTGTGGTATGGAGAATACAATAACATTGGGCCGGGTTGGCGATCAACGGG 1502
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | ||
Sbjct 1440 TTTGGACACTTTGTGGTATGGAGAATACAATAATATTGGGCCAGGTTGGCGATCATCAGG 1499
Query 1503 TCGGGTTAAATGGCCTGGTTATCATATCATGGACAAACGGACTGCATTGTCATTCACCGT 1562
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1500 TCGGGTTAAATGGCCTGGTTATCATATCATGGACAAACGGACTGCATTATCGTTCACCGT 1559
Query 1563 CGGATCGTTCATTGACGGTCGGAGATGGCTTCCGGCAACAGGTATCACATTCACCGCTGG 1622
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1560 TGGATCGTTCATTGACGGTAGGAGATGGCTTCCGGCAACAGGTGTCACATTCACCGCTGG 1619
Query 1623 TCTA-CTAGCTAA 1634
|||| ||| ||||
Sbjct 1620 TCTAGCTAACTAA 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80923278540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5