BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477858
Length=2911
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05670.1 | Symbols: | RING/U-box protein | chr3:1653264-165... 3997 0.0
> AT3G05670.1 | Symbols: | RING/U-box protein | chr3:1653264-1657159
FORWARD LENGTH=3090
Length=3090
Score = 3997 bits (2164), Expect = 0.0
Identities = 2540/2714 (94%), Gaps = 55/2714 (2%)
Strand=Plus/Plus
Query 245 TGAGGAGCATATGGGAAAGAGAAACACTTTTTGGGCAAGAAATTCTAATAGCAAGGTTAG 304
||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||||||
Sbjct 292 TGAGGAGCATATGGGAAAGAGAAACACGTCTTGGGCTAGAAATTCTAATAGAAAGGTTAG 351
Query 305 ATCTAAGGATAAGGGTTCTGATGAATCTGATGAGGATTATGTGATTTCCGACGAGGATGA 364
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 352 ATCTAAGGATAAGGGTTCAGATGAGTCAGATGAGGATTATGTGATTTCCGACGAGGATGA 411
Query 365 AGAAGAGTCTGAGGCTGATCTCAAGGAGGAGTATGCCTCATCCGTTGAC---G-G----- 415
|||||||||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 412 AGAAGAGTCTGAGGCTGATCTCAAGGAGGAGTATGCCTCATCTGTTGACGGTGAGCCATC 471
Query 416 -TTT--T-G-----ATGGGTCTGATGCAGTGGAAGCTGAGGAGTTAGATGAGGTGGAAGA 466
||| | | ||||||||||||| ||||| | |||||| |||||||| ||||||||
Sbjct 472 CTTTGATGGTTTTAATGGGTCTGATGCGGTGGAGGATGAGGAATTAGATGAAGTGGAAGA 531
Query 467 GGAAGATGTGATGCTGAGGAATGTTGAGTGGCCAAAAGTGAAAACTGGTCCTCGTGGTAA 526
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 532 GGAAGATGTGATGCTGAGGAATGTTGAATGGCCAAAAGTGAAGACTGGTCCTCGTGGTAA 591
Query 527 CCGGAAAATCACGGGATGTAAGTCAAGAAAGATGAACCA---AGTTGTGTCTGACAACGA 583
|| |||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 592 TCGAAAAATCACGGGATGTAAGTCAAGAAAGACGAACCAGGTGGTTGTGTCTGACAACGA 651
Query 584 GGATGTGGATCTTGATGATGCGGATGATGAAGAGGAGGAGATAAGGAATTCAAGGAAGGC 643
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 652 GGATGTGGATCTCGATGATGCGGATGATGAAGATGATGAGATAAGGAATTCAAGGAATGC 711
Query 644 TGTT-GGAAAAGTTGGGTCTTTGGATGGAGAGAAACA-CAGTAGAATAGGTTTAGGAAAG 701
|||| ||||||| |||||||||||||||||||||||| || || |||||||||||||||
Sbjct 712 TGTTGGGAAAAG-TGGGTCTTTGGATGGAGAGAAACACCA-AAGGATAGGTTTAGGAAAG 769
Query 702 CGAAGGAGAGTTTTCTATgagatagaggatgaagatggagactatccagaggaggatggc 761
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CGAAGGAGAGTTTTCTATGAGATAGAGGATGAAGATGGAGACTATCCAGAGGAGGATGGT 829
Query 762 gaggaagaggaagagagggatgTGGAAAATGTGGATTTAAATTCTTTGCATGATGGTGAA 821
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 830 GATGAAGAGGAAGAGAGGGATGTGGAAAATGTGGATTCAAATTCTTTGCATGATGGTGAA 889
Query 822 GACGGGATGATGGCATTGGAAGAGCAGGACAATGTGTCACACGAGACAGAAAAGGAAGAT 881
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GACGGGAAGATGGCATTGGAAGAGCAGGACAATGTGTCACACGAGACAGAAAAGGAAGAT 949
Query 882 GATGGAGA-T-T----ATGAGGAT---GA-G--GATGGCGATGAAGATTTTACCGCAGAT 929
|||||||| | | |||||||| || | |||||||||||||||||||||||||||
Sbjct 950 GATGGAGATTATGAGGATGAGGATGAGGATGATGATGGCGATGAAGATTTTACCGCAGAT 1009
Query 930 GAAGATGTCTCATTAGATGAGGAAGAGGAGGAAGAAA-CAATTGCATGTAACAAAAAGT- 987
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct 1010 GAAGATGTCTCATTAGATGAGGAAGAGGAGGAAGAAATC-ATTGCATGTAACAAAAA-TG 1067
Query 988 CACTGAAGGTTTGTAAGAAAAACAAGCGAAAGCGAAGATCTGGAGAAGGTCGTAAAAGAA 1047
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1068 CACTGAAGGTTTGTAAGGGAAACAAGCGAAAGCGAAGATCTGGAGAAGGGCGTAAAAGAA 1127
Query 1048 GGAAGAAATGCTCTGTTGCAAAAACCCGTTTAACGAGGGGAAGAAAGAGACGTGGGAAAA 1107
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 1128 GGAAGAAATGCTCTGTTGCAAAAACCCGTTTAACAAGGGGAAGAAAGAGACGTGTGAGAA 1187
Query 1108 ACACAAACAGAGGAGTTGATGAAGATGATGATGATTTTGTAGATGACTGCCTACCTGCAA 1167
||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1188 ACACAAAGAAAGGAGTTGATGAAGATGATGATGATTTTGTAGATGACTGCTTACCTGCAA 1247
Query 1168 GAAAGAAGGCGAAGACAAAGTCAT------CAAGGCCAAGGCGTCGGCATACCGTGCCAT 1221
|||||||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 1248 GAAAGAAGGCGAAGACAAAGTCATCAAGGCCAAGGCCAAGGCGTCGGTGTACCGTTCCAT 1307
Query 1222 CAGATTCAGACATTGCATCCTCTGCAGAATCCGATTATGAATACACAATCTCGGAGGAGG 1281
||||||||||| ||||||| |||| ||||||||| ||||| || ||||||||||||||||
Sbjct 1308 CAGATTCAGACGTTGCATCGTCTGGAGAATCCGACTATGAGTATACAATCTCGGAGGAGG 1367
Query 1282 AACGAGAGCAGATAATAGAAGCTGGTAGTTTGTTGAGAAGTAGTGTGAAGCATGCATCAT 1341
|| |||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||
Sbjct 1368 AAAGAGAGCAGATAAGAGAAGCCGGTAGTTTGTTGAAAAGTAGTGTGAACCATGCATCAT 1427
Query 1342 CTATAAGACAAACCACAGTCAATAAGGATTTGCCTCAGCTTCGTAAACCTCCTGTGAAGA 1401
|||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1428 CTATAAGACAAACCACGGTCAATAAGGATTTGCCACAGCTTCGTAAGTCTCCTGTGAAGA 1487
Query 1402 AAGGTGAAAAGAAGGTAAAGCTAGTGAAAAGAGATGTGATAAAAAACGTTTGTGGGATTT 1461
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 AAGGTGAAAAGAAGGTAGAGCTAGTGAAAAGAGATGTGATAAAAAACGTTTGTGGGATTT 1547
Query 1462 GTCTGTCTGAGGAAGACATGCGGAGATTGAAGGGAACATTGGACTGCTGTAGCCATTACT 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GTCTGTCTGAGGAAGACATGCGGAGATTGAAGGGAACATTGGACTGCTGTAGCCATTACT 1607
Query 1522 TTTGTTTCACTTGCATAATGGAGTGGTCAAAAGTAGAATCTCGCTGCCCGCTCTGCAAGC 1581
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1608 TTTGTTTCACTTGCATAATGGAGTGGTCGAAAGTAGAATCTCGCTGCCCACTCTGCAAGC 1667
Query 1582 AGCGGTTCAGAACAATCAGTAAGCCTGCAAGATCTACACCTGGAGTAGATTTGAGAGAAG 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AGCGGTTCAGAACAATCAGTAAGCCTGCAAGATCTACACCTGGAGTAGATTTGAGAGAAG 1727
Query 1642 TTGTGATACCGGTACCTGAACGTGATCAGGTCTATCAACCTACTGAAGAAGAGTTGAGGA 1701
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 TTGTGATACCTGTACCTGAACGTGATCAGGTCTATCAACCTACTGAAGAAGAGTTGAGGA 1787
Query 1702 GTTATCTTGATCCCTATGAAAATATAATATGCACTGAATGTCACCAAGGTGATGATGATG 1761
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1788 GTTATCTCGATCCCTATGAAAATATAATATGCACGGAATGTCACCAAGGTGATGATGATG 1847
Query 1762 GGCTTATGTTGCTTTGTGATCTTTGTGATTCATCTGCCCATACGTACTGTGTTGGTCTCG 1821
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1848 GGCTTATGTTGCTTTGTGATCTTTGTGATTCATCTGCCCATACGTACTGTGTTGGTCTTG 1907
Query 1822 GGAGGGAAGTACCTGAAGGAAACTGGTACTGTGAAGGTTGTAGACCCGTTGCACTTGGAT 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 GGAGGGAAGTACCTGAAGGAAACTGGTACTGTGAAGGTTGTAGACCCGTTGCACTTGGAT 1967
Query 1882 CAGCTAGTTCCCAAACGCATAATACATCCGAGCAACAAAGGGTTAGTGGCTTTTACAGTA 1941
||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1968 CAGCTAGTTCCCAAACGCATATTATATCCGAGCAACAAAGGGGTAGTGGCTTTTACAGTA 2027
Query 1942 GACCATCACCTCTTGTAGTTTCAGGGCAATATCAAGATGCGTCTTTGCTAGTCTCCCCAC 2001
|||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 2028 GACCGTCACCTCTTGTAGTTTCAGGGCAATATCAAGATGTGTCTTTAATAGTCTCCCCAC 2087
Query 2002 GTACACCATTTTTCAATGGAGAGAACCTATTTTCTCCAAGGCTTCCTAATGGTGATGTTC 2061
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 2088 GTACACCATTTTTCAATGGAGAGAACCTATTTTCTCCAAGGATTCCTAATGGTGATGCTC 2147
Query 2062 AAGGTTCTTCTCCATCCGGCTTAGGGGCAACCACATTATCAAGTAGAAGGACGCTTCACA 2121
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2148 AAGGTTCTTCTCCATCCGGCTTAGGGGCAACCACATTATCCAGAAGAAGGACGCTTCACA 2207
Query 2122 GACACATACAAAATATTATCAACAGTGATAGACTTATTAATATGGGTGCTAGAACTGGTG 2181
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2208 GACACATACAAAATATTATCAACGGTGATAGACTTATTAATATGGGTGCTAGAACTGGTG 2267
Query 2182 GAACATCGAGTGATGGTTTTGTGACTACACAAGTAGGTCATGGCAGAACAATCGACCCGT 2241
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 2268 GAACATCGAGTGATGGTTTCGTGACTACACAAATAGGTCATGGCAGAACAATCGACCCAT 2327
Query 2242 CTCAGCCTGCAGCGAGCCAAGCAACAGGTG-TGTCATTGTATACAATCTCTGAGGAAAGA 2300
||||||||| ||||||||||| |||||| | | || |||||| |||||||||||||||||
Sbjct 2328 CTCAGCCTGTAGCGAGCCAAGAAACAGG-GATATCGTTGTATGCAATCTCTGAGGAAAGA 2386
Query 2301 CTACCCGACAACAGTTCATTGATTTCTGCCCATAACCCTGAGCTTTTGTCTCCAAAGTTA 2360
|||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2387 CTACCCAACAACAATTCATTGATTTCTGCCCATGACCCTGAGCTTTTGTCTCCAAAGTTA 2446
Query 2361 GATGAATTTGGAAGCCAAGAAGCATTCAGACGTTTGTCTAATAATACATTTCTTGGTGAG 2420
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2447 GATGAATTTGGAAGTGAAGAAGCATTCAGACGTTTGTCTAATAATACATTTCTTGGTGAG 2506
Query 2421 CGGCCTATCGATTTAGGATTATGTCATGGGCTGGCTCAGGGTGATCCCTTGTTTGGTAAT 2480
|| ||||||||||||||||| |||||| ||||||||||||||||||||| || |||||
Sbjct 2507 CGACCTATCGATTTAGGATTCCATCATGGACTGGCTCAGGGTGATCCCTTGGTTAGTAAT 2566
Query 2481 CAACAACATCTTCACAGCTACATGCCAAACATAATGTCTTCCATGGCAGGAGAACGACTG 2540
||||||| ||| |||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 2567 CAACAACGTCTACACAGCCACATGCCAAACACAATGTCTTCCATGGCAGGAGAACGACTG 2626
Query 2541 CCACAAAGAGTTAAAGCGCATCTCAAAAACTTGTCCAGTCAAATCGACTTAGGTCAAACC 2600
| | ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2627 CAAGAAAGAGTTAAAGCCCATCTCAAAAACTTGTCCAGTCAAAACGACTTAGGTCAAACC 2686
Query 2601 ACTTTCGACGAAATTTCCACGTGCTCAATGCACACGATACTGGCAGCTTGTGGACTTGAA 2660
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2687 ACTTTCGACGAGATTTCCACGTGCTCAATACACACGATACTGGCAGCTTGTGGGCTTGAA 2746
Query 2661 CACGAGAGCAGTGAAGTCCATCTTGTTCCGCCACCAGTGACGTGTACTCACCATCATATG 2720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2747 CACGAGAGCAGTGAAGTCCATCTTGTTCCGCCACCAGTGACGTGTACTCACCATCATATG 2806
Query 2721 ATACCTGGCAGCAGTAGTAGTAG---TAGCGGCAGCAGCCTAATGAAAGGGTGTTGCTAT 2777
| |||||||||||| || ||||| ||| || || ||||| ||||||||||||||||||
Sbjct 2807 ACACCTGGCAGCAGCAGCAGTAGCAGTAGTGGTAGTAGCCTGATGAAAGGGTGTTGCTAT 2866
Query 2778 TCTTGTTTTGATTCATTTGTAGAAGATGTAGTTAAAATGATTCTAGACACAAGACAACCC 2837
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2867 TCTTGTTTTGATTCATTTGTAGAAGATGTAGTTAAGATGATTCTAGACACAAGACAACCC 2926
Query 2838 CATTGGTTGAGGCTAGGGCTCCACTAAAACCACTTGCTTCAATTGTTTATTAGATTCGTT 2897
||||||||||| |||||||||||||||| ||||||||||||||||| || |||| |||
Sbjct 2927 CATTGGTTGAGTCTAGGGCTCCACTAAACCCACTTGCTTCAATTGTCTA---GATTTGTT 2983
Query 2898 AGAAAATTGAATTT 2911
|||||||| |||||
Sbjct 2984 AGAAAATTCAATTT 2997
Score = 246 bits (133), Expect = 8e-64
Identities = 157/168 (93%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 1 AATTTTGGCTCATTACCaaaaaaaaagaaaaaaaaaGCTGTAAATAGAGAGGAAAATAAG 60
||||||||||||||||| ||||||| ||||||| || ||||||||||||| ||||||||
Sbjct 1 AATTTTGGCTCATTACC--AAAAAAA-AAAAAAATAGTTGTAAATAGAGAGAAAAATAAG 57
Query 61 GCGGGGAAAAGGATCACGATTCACAAATTTAGTGGAAAAATCAAAAGTGCTTCGTCTTCT 120
||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 58 GCGGGGAAAAGGATCACGATTCACAAAATTAGTGGAAAAATCATAAGTGTTTCGTCTTCT 117
Query 121 TCATCGGAGATCTGGTGCTCTGAATTGGAGAATTGAGGTTTGAGATTT 168
||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 118 TCATCGGAGATCTCGTGCTCTGAATTCGAGAATTGAGGTTTGAGATTT 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144681463612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5