BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477859
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05675.2 | Symbols: | BTB/POZ domain-containing protein | c... 2115 0.0
> AT3G05675.2 | Symbols: | BTB/POZ domain-containing protein |
chr3:1658271-1660306 REVERSE LENGTH=1927
Length=1927
Score = 2115 bits (1145), Expect = 0.0
Identities = 1297/1370 (95%), Gaps = 11/1370 (1%)
Strand=Plus/Plus
Query 111 GGTACTGAAATACATAACAATC-CAGCTTTTTCTCTATGGAGCCTCGTGATAATCAAGCC 169
||| |||||| ||| || || | |||||||| ||||||||||||||| ||||||||||||
Sbjct 413 GGTGCTGAAAGACA-AAAAACCTCAGCTTTTGCTCTATGGAGCCTCGAGATAATCAAGCC 471
Query 170 GAGGCTTCATATACATTTGGTGATCGATCGAGCAGTGACATAGTTGTTAGACTAAGAAAC 229
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 472 GAGGCTTCATATACATTTGGTGATCGATCAAGCAGTGACATAGTTGTTAGACTAAGAAAT 531
Query 230 GAAGAAGGCCGTGATGATTGGATCTATTGCCATTCCAAGATCCTTAGTGAGAAAAGCCAG 289
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GAAGAAGGTCGTGATGATTGGATCTATTGCCATTCCAAGATCCTTAGTGAGAAAAGCCAG 591
Query 290 TACTTCGCTGACCGTCTCTCTGATAAATGGCCCACTTGCAAGATTCTTGATTCACGCTAC 349
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 592 TATTTTGCTGACCGTCTCTCTGATAAATGGCCCACTTGCAAGATTCTTGATTCACGTTAC 651
Query 350 TGTGTTGAGGTCATCTGTCAAGAATCAGACTATGATCATCATATCAATCTCTTAAGACTT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TGTGTTGAGGTCATCTGTCAAGAATCAGACTATGATCATCATATCAATCTCTTAAGACTT 711
Query 410 CTCTATCTTGTCTCTGATGATGTCCATGAGGATAACTTGTGTCATAATGTGAAAAGTGCG 469
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CTCTATGTTGTCTCTGATGATGTCCATGAGGATAACTTGTGTCATAATGTGAAAAGTGCG 771
Query 470 TTGGGGATTCTCTCTGTCGCTAAAGAACTTAGTTGCCCTCAGATTGTCACTGCTTGTGTG 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTGGGGATTCTCTCTGTCGCTAAAGAACTTAGTTGCCCTCAGATTGTCACTGCTTGTGTC 831
Query 530 AACTACTTGGAAGCTGTTCCATGGGAAGAAGGCGAAGAGGAAGAGATTCTGCGGACTGTA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 832 AACTACTTGGAAGCTGTTCCATGGGAAGAAGGCGAAGAGGAAGAGATTCTGCGGATTGTA 891
Query 590 CCGAGAATTGGATCAGAAGCAGAGCCGATTCTTGCCCGTCTCCAACCAGTTGATCAGTCC 649
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CCGAGGATTGGATCAGAAGCAGAGCCGATTCTTGCCCGTCTCCAACCAGTTGATCAGTCC 951
Query 650 GCTGTTACT-GAAATCTTTGTATCGGCTTTTAGGTTTGCTACTTCGTCCCCGCCTTTGCC 708
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GCTGTT-CTTGAAATCTTTGTATCGGCTTTTAGGTTTGCTACTTCGTCCCCGCCTTTGCT 1010
Query 709 CTTGGGTGACATAAAATCCTCGGCTCAAGAACAGATTGAGTATATGATAACCGAAGATGA 768
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1011 CTTGGGTGACATAAAATCCTCTGCTCAAGAACAGATTGAGTATATGATAACTGAAGATGA 1070
Query 769 CGATGCACCGTTGTTGATTGCTGATGAAGAAGTCAAGCTTGAAGTAAAAGAATGTGTAAA 828
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1071 CGATGCACCGTTGTTGATTGCTGATGAAGAAGTCAAGCTTGAAGTAAAACAATGTGTAAA 1130
Query 829 GAGCCTGTTTGGTAGATTCTTCCAATGTCTAGAAGAAACCTCTTTCAAACCCGTCGAGTC 888
||||||||||| |||||||||||| || |||||||||| | |||| ||||||||||||||
Sbjct 1131 GAGCCTGTTTGTTAGATTCTTCCAGTGCCTAGAAGAAATCACTTTGAAACCCGTCGAGTC 1190
Query 889 TGAGGTTATTAACAAAAAGGGGTCTTTTAGGATGGTTCTTTCAGATTTGTCGT-GGGCTT 947
|||||| || |||||||||||||||||||||||||| ||||||||| ||| || ||| ||
Sbjct 1191 TGAGGTAATCAACAAAAAGGGGTCTTTTAGGATGGTCCTTTCAGATATGT-GTTGGGTTT 1249
Query 948 TTCAGATATTAACAAAGATGGAAGTGGTTAGAGATTTTGTTATAACATGGGTTGACATAT 1007
||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1250 TTCAGATATTAACGAAGATGGAAGTTGTTAGAGATTTTGTTATAACATGGGCTGACATAT 1309
Query 1008 CTGAGAAGTTAGTTAAGGTAGTTGAGCAGTTGGAAACAACAGTTGCAGAGACTGTTGAGA 1067
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1310 CTGAGAAGTTAGTTAAGGTAGTTGAGCAGTTGGAAACAACAGTTGTAGAGGCTGTTGAGA 1369
Query 1068 TAAGAGTCAAGGTCATTGAGGTGACTGCAAAAGTCATAGAGGCGATCGGTTATGGAACAG 1127
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1370 TAAGAGTCAAGGTCATCGAGGTGACTGCAAAAGTCATAGAAGCGATTGGTTATGGAACAG 1429
Query 1128 TGATATTGCCAACAGCGAAAAGGCTTGAGATGGTAAAACTATGGCTTCCTTTTGTAAGAA 1187
||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1430 TGATATTACCAACAGCGAAACGGCTTCAGATGGTAAAACTATGGCTTCCTTTTGTAAGAA 1489
Query 1188 ACACAAAGCCACTTGTTGACTCACCGGTTACTGAAGATGAGGGGAATGGTACTGTGAGAT 1247
|||||||||| ||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 1490 ACACAAAGCCTCTTGTTGACTCACCGGTTAGAGAAGATGAGGAGAATGATACTGTGAGAT 1549
Query 1248 ATAAAATTGATGGAGAGATATGGCAAGCTTTAGAATCTTCCTTTGTATCGATAATTCTGG 1307
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 ATAAAATCGACGGAGAGATATGGCAAGCTTTAGAATCTTCCTTTGTATCGATAATTCTGG 1609
Query 1308 CATTGCCATCCGCAGACCAAGCTGAGATATTAACGGAATGGTTAGGCAAGAACGGGTTGT 1367
|||||||||| |||||||||||||||||||| || ||||||||| ||||||| |||||||
Sbjct 1610 CATTGCCATCTGCAGACCAAGCTGAGATATTGACTGAATGGTTAAGCAAGAATGGGTTGT 1669
Query 1368 ATCCGGATTTGACAGAAGCTTTTGAGGTTTGGTGTTACAGATCAAAAGTCGCAAAGAGAA 1427
|||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 1670 ATCCGGATTTAACAGAAGCTTTCGAGGTTTGGTGTTACAGATCGAAAGTCGCGAAGAGAA 1729
Query 1428 GATTGGGTTT-GCTTGGCGGCGAGGAAGATGAGAACGGTATGTCTTAACT 1476
|||||||||| | | || || | | |||| |||||||| |||||||||||
Sbjct 1730 GATTGGGTTTAG-TCGG-GG-GTG-AAGAGGAGAACGGCATGTCTTAACT 1775
Score = 122 bits (66), Expect = 8e-27
Identities = 75/79 (95%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 1 AGAAGAGAGAGAGAAAGCGAAAGAGATCGGGTGGAGTTTGGATGATATCAGAGTTGTCCG 60
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3 AGAAGAGAGAGAG--AGCGAAGGAGATCGGGTGGAGTTTGGATGATATCAGAGTTGTCCG 60
Query 61 TAGATGCAATAAGATTAAA 79
||||||||||| |||||||
Sbjct 61 TAGATGCAATAGGATTAAA 79
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 79 ACCATTGAGAATCTTAAAGATTCAACATTTAGGGTACT 116
|||| |||||||||||||||||||||||||||||||||
Sbjct 112 ACCACTGAGAATCTTAAAGATTCAACATTTAGGGTACT 149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5