BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477862
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05690.1 | Symbols: UNE8, ATHAP2B, HAP2B, NF-YA2 | nuclear f... 2289 0.0
> AT3G05690.1 | Symbols: UNE8, ATHAP2B, HAP2B, NF-YA2 | nuclear
factor Y, subunit A2 | chr3:1676546-1678932 REVERSE LENGTH=1464
Length=1464
Score = 2289 bits (1239), Expect = 0.0
Identities = 1398/1472 (95%), Gaps = 22/1472 (1%)
Strand=Plus/Plus
Query 2 TACTCATGTGTGTGAATGAATCTCTGTTTCTTGTTTTGGAACCGATATGGCTTCCTAACA 61
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4 TACTAATGTGTGTGAATGAATCTCTGTTTCTTGTTTTGGAACCGAGATGGCTTCCTAACA 63
Query 62 ATTGGGCTTTTCTCTGCCTCTTCCTAGGAATCTGAAGCGCTTCTCTACTCTCTACTCTAT 121
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 64 ATTGGGCTTTTCTCTGCCTCTTCCTAGGAATCTGAAGCTCTTCTCTACTCTCTACTC--T 121
Query 122 CATCACTCCATCTGTGAGGAACAAATCTTTCTTCTTC-TC-A-GCAATATCCACTTTTCA 178
|||||||||||||| ||||| ||||||||| ||| || | ||| |||| | ||||||
Sbjct 122 -ATCACTCCATCTGT---GAACATATCTTTCTTATTCTTCTAGGCACTATCTATTTTTCA 177
Query 179 C-TTTTGT-ATCGGAATTTGGAGATGGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG 236
| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTTTTTGTAATTGGAATTTGGAGATGGCTATGCAAACTGTGAGAGAAGGTCTCTTCTCTG 237
Query 237 CTCCACAGACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCC 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTCCACAGACTTCTTGGTGGACTGCTTTTGGATCTCAGCCGTTGGCTCCGGAGAGTCTCG 297
Query 297 CCGGCGATTCTGACTCGTTCGCCAGTGTTAAGGTCGGATCTGTCGGAGAGACAGGACAAG 356
|||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 298 CCGGCGATTCTGACTCATTCGCCGGAGTTAAGGTCGGATCTGTCGGAGAGACAGGACAAC 357
Query 357 GTGTGGATAAACAGAGCAACTCTGCAACTCACTTAGCTTTCTCACTTGGTGATGTAAAGA 416
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 GTGTGGATAAACAGAGCAACTCTGCAACGCACTTAGCTTTCTCACTTGGTGATGTAAAGA 417
Query 417 GTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCATTGCAATCGCCTTGCTTGG 476
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 418 GTCCAAGACTTGTGCCAAAGCCTCATGGAGCTACTTTCTCAATGCAATCACCTTGCTTGG 477
Query 477 AACTTGGATTTACTCAGCCACCGATCTACACAAAGTATCCTTATGGGGAACCACAGTATT 536
||||||||||| |||||||||||||||| ||||||||||| ||||| |||| ||| || |
Sbjct 478 AACTTGGATTTTCTCAGCCACCGATCTATACAAAGTATCCCTATGGAGAACAACAATACT 537
Query 537 ATGGAGTTGTTTCAGCCTATGGATCTCAGAGCAGGGTAATGCTTCCTCTAACCATGGAAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 538 ATGGAGTTGTTTCAGCCTATGGATCTCAGAGCAGGGTAATGCTTCCTCTAAACATGGAAA 597
Query 597 CGGAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAATCATAAGGCGACGCC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 598 CGGAAGATAGTACCATCTATGTGAACTCAAAGCAATACCATGGAATCATAAGGAGACGCC 657
Query 657 AGTCCCGTGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAGTAGCAGATGCCGCA 716
| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 658 AATCCCGCGCAAAGGCTGCTGCTGTTCTTGATCAGAAGAAATTGAGTAGTAGATGCCGCA 717
Query 717 AGCCATATATGCATCATTCGCGCCATCTCCATGCATTGCGGCGTCCTAGAGGATCCGGTG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AGCCATATATGCATCATTCGCGCCATCTCCATGCATTGCGGCGTCCTAGAGGATCCGGTG 777
Query 777 GGAGATTCTTGAACACTAAAAGTCAGAACTTGGAAAAAAGCGGAACCAATGCAAAGAAAG 836
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 GGAGATTCTTGAACACTAAAAGTCAGAACTTGGAAAATAGCGGAACCAATGCAAAGAAAG 837
Query 837 CTGACGGAAGTATGCAGATCCAGTCTCAGCCTAAGCCTCAGCAAAGTAACTCTCAGAATT 896
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GTGATGGAAGTATGCAGATTCAGTCTCAGCCTAAGCCTCAGCAAAGTAACTCTCAGAATT 897
Query 897 CTGAAGTTGTTCATCCGGAAAACGGGACCATGAACTTATCGAATGGATTAAATGTGTCGG 956
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 CTGAAGTTGTTCATCCGGAAAACGGGACCATGAACTTATCGAACGGATTAAATGTGTCGG 957
Query 957 GATCAGAAGTTACAAGCATGAACTACTTCCTAAGTTCTCCAGTCCATTCTCTTGGTGGCA 1016
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 958 GATCAGAAGTTACTAGCATGAACTACTTCCTAAGTTCTCCCGTTCATTCTCTTGGTGGCA 1017
Query 1017 TGGTAATGCCTAGCAAGTGGATAGCAGCAGCAGCAGGAATGGATAATGGCTGCCGCAATT 1076
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1018 TGGTAATGCCTAGCAAGTGGATAGCAGCAGCAGCAGCAATGGATAATGGCTGCTGCAATT 1077
Query 1077 TCAAAACCTGATCCTTTACCGTTTCACAGTCAAACGGAGAGAGATAAAGAACTCTTGCCT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCAAAACCTGATCCTTTACCGTTTCACAGTCAAACGGAGAGAGATAAAGAACTCTTGCCT 1137
Query 1137 TGGTATAAAGGATTTTCCTTTTTGCCAATCCGCTTTAGCTGTGAACAGGCAAATCATCTT 1196
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1138 TGGTATAAAGGATTTTCCTTTTTGCCAATCCGCTTTGGCTGTGAACAGGCAAATCATCTT 1197
Query 1197 TGGCTCATTCTCTATTAAGGTCACTTCACTGTCAGGTGAAAAAA-CTTTGAT-TA---AT 1251
||||||||||||||||||||| ||||| | || ||||||||||| ||||||| || ||
Sbjct 1198 TGGCTCATTCTCTATTAAGGTAACTTCGCCGTGAGGTGAAAAAAGCTTTGATATATTTAT 1257
Query 1252 CTTCTGTGTAAAAGTAGTTAAAACTGGTGAAGAACAATGATGGGTTTGGTCACTAAACCC 1311
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1258 CTTCAGTGTAAAAGTAGTTAAAACTGGTGAAGAACAATGATGTGTTTGGTCACTAAACCC 1317
Query 1312 ACTTGCTCCAACTAGTAgtgtgtgtgtgtgtTAAGAAAACTCTGTTATCTGATTTTTGTA 1371
||||| ||||||||||||||||||| | | | |||||||||||||||||||||||| |||
Sbjct 1318 ACTTGTTCCAACTAGTAGTGTGTGT-T-T-T-AAGAAAACTCTGTTATCTGATTTT-GTA 1372
Query 1372 GCTCTCTCTGTCTCTGTGTGTTTCTCAAACAACTGTAAGAA-TTTTAAGTTATGTGGCTT 1430
|||||||||| || |||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 1373 GCTCTCTCTGGCTTTGTGTGTTTCTCAAACAACTGTAACAACTTTTAAGTTATGTGGTTT 1432
Query 1431 ATGTAACATATTTAAGACGTGTGTTTTTGTAT 1462
|||||||||||||||||| |||||||||||||
Sbjct 1433 ATGTAACATATTTAAGACCTGTGTTTTTGTAT 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72087982620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5