BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477863
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05700.1 | Symbols: | Drought-responsive family protein | c... 1338 0.0
> AT3G05700.1 | Symbols: | Drought-responsive family protein |
chr3:1682088-1684572 REVERSE LENGTH=1265
Length=1265
Score = 1338 bits (724), Expect = 0.0
Identities = 942/1042 (90%), Gaps = 36/1042 (3%)
Strand=Plus/Plus
Query 176 GTTTTGTCAATAATGGATTCTGATTCATGGAGTGATCGTCTTGCTTCAGCTACAAGGAGA 235
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 238 GTTTTGTCAATAATGGATTCCGATTCATGGAGTGATCGTCTCGCTTCAGCTACGAGGAGA 297
Query 236 TACCAGCTAGCTTTTCCACCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGG 295
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TACCAGCTAGCTTTTCCATCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGA 357
Query 296 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATAGTGTG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATATTGTC 417
Query 356 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAAAATGGGGTATGTCCG 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAAAATGGGGTATGTCCA 477
Query 416 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAACATGCTAAT 475
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 478 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAGCACGCTAAT 537
Query 476 ATATTCAAGATGCACCGCAAGAGAAAATCAAGAAGAGGCGGGTCACATTCCACGTTATCG 535
|| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||
Sbjct 538 ATTTTCAAGATGCACCGCAAGAGAAAACCAAGAAGAGGCGGGTCATATTCCACATTATCG 597
Query 536 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTATTTGGAGGATCTTCGTGT 595
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 598 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTCTTTGGAGGATCTTCGTGT 657
Query 596 ATAGTATCTTCTTCCTCATCATCCAATGTAGCGGCTGACCCATTGTTATCGTCGTTCATT 655
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 ATAGTATCGTCTTCCTCATCATCCAATGTAGCTGCTGACCCATTGTTATCGTCGTTCATT 717
Query 656 TCACCTATTGCTGAAGGGTTCTTCACAACGGAGTCATGTATATCTGCAGAAACCGGTTCT 715
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||
Sbjct 718 TCTCCTATTGCTGATGGGTTCTTCACCACGGAGTCATGCATATCTGCAGAAACGGGTCCT 777
Query 716 GTCAAGAAACCAT-TAACTCAGAGTATACCTGAAGGGAATGC-AAAAATACCGTCTCTTT 773
||||||||| || || |||| || |||| ||| |||||| ||||| || |||||||
Sbjct 778 GTCAAGAAAACAACTAT-TCAGTGTTTACCCGAACAGAATGCGAAAAAAACT-TCTCTTT 835
Query 774 CAGCTGAGGATCATAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTGTTGAGCT 833
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 CAGCTGAGGATCACAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTATTGAGCT 895
Query 834 CTACGATTCTTGATGACGGCTTATGATGGAGTAGAATGCTTCTGGTAACTTGTCAGCAAT 893
||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 896 CTACGATTCTTGATGACAGCTTATAATGGAGTATC--GCTTCTGGTAACTTGTCAGCAAT 953
Query 894 GAGGAAACTCCATGTTCTGTCTCAGGAG-A-AA-GTAGGAAATTATTGTTTGTGGGGAGC 950
||||||||||||||||||||||||| || | || ||| ||||||||||||||||||||||
Sbjct 954 GAGGAAACTCCATGTTCTGTCTCAGCAGGACAAAGTACGAAATTATTGTTTGTGGGGAGC 1013
Query 951 AAATAAAGGAGAGAGAGAAAGAGATTATGAATGAGTGTAACTTATGAACACATTAATAGC 1010
|||||||||||||||| ||||||||||||||||| || |||||||||| ||
Sbjct 1014 AAATAAAGGAGAGAGA--------TTATGAATGAGTGTAACCTAAGAACACATTA---GC 1062
Query 1011 TTCTGCGGTTAACGCTCCAATTGCCTGTAGGTCATGA-AAAAA---CAAAA-TGTATCTA 1065
||||||||||||||| |||||||| |||||||||||| ||||| ||||| ||||| ||
Sbjct 1063 TTCTGCGGTTAACGCCCCAATTGCTTGTAGGTCATGAGAAAAAAAACAAAAATGTATGTA 1122
Query 1066 TTTCACGTATTTGCATTCAATTATTCGTTTCCAGTTCCTTGA-TACAATCTGACA-GAGA 1123
||||||||||| || ||||||||||||||||||||| || | || || || | ||
Sbjct 1123 TTTCACGTATTCGCGTTCAATTATTCGTTTCCAGTTGTTT-ACTAGGATAAGA-ATGACC 1180
Query 1124 A-ATATCGGTTCCTACTT-GTCATGGCAACGATTTCAGATTTTGTAGAGGCACATTTCTT 1181
| |||| | || | || ||||||| |||| ||||||||||||||||||||||| |||
Sbjct 1181 ATATAT-G-TTGAAAATTTGTCATGGAAACGGCTTCAGATTTTGTAGAGGCACATT-CTT 1237
Query 1182 CTTG-AATCAGATTTTTAGCTT 1202
|| | |||||||||| ||||||
Sbjct 1238 CT-GCAATCAGATTTATAGCTT 1258
Score = 209 bits (113), Expect = 4e-53
Identities = 143/156 (92%), Gaps = 7/156 (4%)
Strand=Plus/Plus
Query 24 aaaaaaaGAAAGACAAAACTTTGTTTAA-AAACCGACCCAGAATCGTGGTCTTTGTAATC 82
||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 46 AAAAAAAGAAAGACAAAACTTTG-TTAATAAACCGACCCAGAATCGTGGTCTTCATAATC 104
Query 83 TGTCTTTTACCATTTTCGTTGGATTTCTTCAGACAATAATCAGAATCATTTTCTTTCGTA 142
|||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 105 TGTC-TTTACCATTTTCGTTGGATTTCTTCAGACAGTAATCAGAATCATTTACTTTCGTA 163
Query 143 AATC-GATTCATTTTCTTCATAAC-TTT-ATTTGTT 175
| | ||||||||||||||| ||| ||| |||||||
Sbjct 164 TA-CAGATTCATTTTCTTCAAAACGTTTTATTTGTT 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5