BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477863 Length=1202 Score E Sequences producing significant alignments: (Bits) Value AT3G05700.1 | Symbols: | Drought-responsive family protein | c... 1338 0.0 > AT3G05700.1 | Symbols: | Drought-responsive family protein | chr3:1682088-1684572 REVERSE LENGTH=1265 Length=1265 Score = 1338 bits (724), Expect = 0.0 Identities = 942/1042 (90%), Gaps = 36/1042 (3%) Strand=Plus/Plus Query 176 GTTTTGTCAATAATGGATTCTGATTCATGGAGTGATCGTCTTGCTTCAGCTACAAGGAGA 235 |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| Sbjct 238 GTTTTGTCAATAATGGATTCCGATTCATGGAGTGATCGTCTCGCTTCAGCTACGAGGAGA 297 Query 236 TACCAGCTAGCTTTTCCACCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGG 295 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 298 TACCAGCTAGCTTTTCCATCACGATCTGATACATTCTTAGGGTTTGAAGAGATAGATGGA 357 Query 296 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATAGTGTG 355 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 358 GAAGAAGAGTTCAGGGAAGAGTTTGCTTGCCCTTTCTGTTCTGACTATTTTGATATTGTC 417 Query 356 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAAAATGGGGTATGTCCG 415 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TCTCTCTGCTGCCACATAGATGAAGATCATCCTATGGAAGCCAAAAATGGGGTATGTCCA 477 Query 416 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAACATGCTAAT 475 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 478 GTTTGTGCGGTTAGGGTGGGTGTTGACATGGTTGCTCATATAACCCTTCAGCACGCTAAT 537 Query 476 ATATTCAAGATGCACCGCAAGAGAAAATCAAGAAGAGGCGGGTCACATTCCACGTTATCG 535 || |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| Sbjct 538 ATTTTCAAGATGCACCGCAAGAGAAAACCAAGAAGAGGCGGGTCATATTCCACATTATCG 597 Query 536 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTATTTGGAGGATCTTCGTGT 595 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 598 ATCTTAAGGAGAGAGTTTCCTGATGGAAACTTTCAGAGCCTCTTTGGAGGATCTTCGTGT 657 Query 596 ATAGTATCTTCTTCCTCATCATCCAATGTAGCGGCTGACCCATTGTTATCGTCGTTCATT 655 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 658 ATAGTATCGTCTTCCTCATCATCCAATGTAGCTGCTGACCCATTGTTATCGTCGTTCATT 717 Query 656 TCACCTATTGCTGAAGGGTTCTTCACAACGGAGTCATGTATATCTGCAGAAACCGGTTCT 715 || ||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||| || Sbjct 718 TCTCCTATTGCTGATGGGTTCTTCACCACGGAGTCATGCATATCTGCAGAAACGGGTCCT 777 Query 716 GTCAAGAAACCAT-TAACTCAGAGTATACCTGAAGGGAATGC-AAAAATACCGTCTCTTT 773 ||||||||| || || |||| || |||| ||| |||||| ||||| || ||||||| Sbjct 778 GTCAAGAAAACAACTAT-TCAGTGTTTACCCGAACAGAATGCGAAAAAAACT-TCTCTTT 835 Query 774 CAGCTGAGGATCATAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTGTTGAGCT 833 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 836 CAGCTGAGGATCACAAGCAGAAGTTGAAACGCAGTGAGTTTGTTCGAGAGCTATTGAGCT 895 Query 834 CTACGATTCTTGATGACGGCTTATGATGGAGTAGAATGCTTCTGGTAACTTGTCAGCAAT 893 ||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct 896 CTACGATTCTTGATGACAGCTTATAATGGAGTATC--GCTTCTGGTAACTTGTCAGCAAT 953 Query 894 GAGGAAACTCCATGTTCTGTCTCAGGAG-A-AA-GTAGGAAATTATTGTTTGTGGGGAGC 950 ||||||||||||||||||||||||| || | || ||| |||||||||||||||||||||| Sbjct 954 GAGGAAACTCCATGTTCTGTCTCAGCAGGACAAAGTACGAAATTATTGTTTGTGGGGAGC 1013 Query 951 AAATAAAGGAGAGAGAGAAAGAGATTATGAATGAGTGTAACTTATGAACACATTAATAGC 1010 |||||||||||||||| ||||||||||||||||| || |||||||||| || Sbjct 1014 AAATAAAGGAGAGAGA--------TTATGAATGAGTGTAACCTAAGAACACATTA---GC 1062 Query 1011 TTCTGCGGTTAACGCTCCAATTGCCTGTAGGTCATGA-AAAAA---CAAAA-TGTATCTA 1065 ||||||||||||||| |||||||| |||||||||||| ||||| ||||| ||||| || Sbjct 1063 TTCTGCGGTTAACGCCCCAATTGCTTGTAGGTCATGAGAAAAAAAACAAAAATGTATGTA 1122 Query 1066 TTTCACGTATTTGCATTCAATTATTCGTTTCCAGTTCCTTGA-TACAATCTGACA-GAGA 1123 ||||||||||| || ||||||||||||||||||||| || | || || || | || Sbjct 1123 TTTCACGTATTCGCGTTCAATTATTCGTTTCCAGTTGTTT-ACTAGGATAAGA-ATGACC 1180 Query 1124 A-ATATCGGTTCCTACTT-GTCATGGCAACGATTTCAGATTTTGTAGAGGCACATTTCTT 1181 | |||| | || | || ||||||| |||| ||||||||||||||||||||||| ||| Sbjct 1181 ATATAT-G-TTGAAAATTTGTCATGGAAACGGCTTCAGATTTTGTAGAGGCACATT-CTT 1237 Query 1182 CTTG-AATCAGATTTTTAGCTT 1202 || | |||||||||| |||||| Sbjct 1238 CT-GCAATCAGATTTATAGCTT 1258 Score = 209 bits (113), Expect = 4e-53 Identities = 143/156 (92%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 24 aaaaaaaGAAAGACAAAACTTTGTTTAA-AAACCGACCCAGAATCGTGGTCTTTGTAATC 82 ||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| Sbjct 46 AAAAAAAGAAAGACAAAACTTTG-TTAATAAACCGACCCAGAATCGTGGTCTTCATAATC 104 Query 83 TGTCTTTTACCATTTTCGTTGGATTTCTTCAGACAATAATCAGAATCATTTTCTTTCGTA 142 |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 105 TGTC-TTTACCATTTTCGTTGGATTTCTTCAGACAGTAATCAGAATCATTTACTTTCGTA 163 Query 143 AATC-GATTCATTTTCTTCATAAC-TTT-ATTTGTT 175 | | ||||||||||||||| ||| ||| ||||||| Sbjct 164 TA-CAGATTCATTTTCTTCAAAACGTTTTATTTGTT 198 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59035840920 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5