BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477864
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05710.2 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43 |... 2272 0.0
AT5G26980.1 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of pl... 876 0.0
> AT3G05710.2 | Symbols: SYP43, ATSYP43 | syntaxin of plants 43
| chr3:1685003-1687558 FORWARD LENGTH=1584
Length=1584
Score = 2272 bits (1230), Expect = 0.0
Identities = 1463/1566 (93%), Gaps = 53/1566 (3%)
Strand=Plus/Plus
Query 1 TTGTGAATCTCGGAGCTGTTTTTCTCCGTCGGAGAACTTTGATCCCGCCGGTA-ATCGGC 59
|||||||||| || |||||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 24 TTGTGAATCTGGGCGCTGTTTTTCTCCGTCGGAGAA-TTTGATCCCGCCGG-AGATCGGC 81
Query 60 CGGTTTCCGC---CG---TC---ACATT----CG---TT---TGCTTTGTCTATGATGAA 100
|||||||||| || || | || || || ||||||||||||||||||
Sbjct 82 CGGTTTCCGCAGTCGCATTCGTTTCTTTCGCGCGATTTTCGATGCTTTGTCTATGATGAA 141
Query 101 ACCGCGATCCTGTTCAGATCTATAGCTTTCGATCGGAAGGGAAGCTAAAATCTATCTAGA 160
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 142 ACCGCGATCCTGTTTAGATCTATAGCTTTCGATCGGAAGGGAAGCTAAAATCCATCTAGA 201
Query 161 CGCCGAGATCTTGGTTA-CTTATCACTGAGATTCTTCTAGGGTTTATATTTGAGCTGCTA 219
||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||
Sbjct 202 CGCCGAGATCTTGGTTAGC-TATCACTGAGATTCTTATAGGGTTTATATTTGAGCTGTTA 260
Query 220 TGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAGCTCTCTAAGGAGCGTTC 279
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 261 TGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAACTCTCTCAGGAGCGTTC 320
Query 280 GTGCTCCAATGGGGTCGTCTTCGTCGTCGACGGTAACGGAGCACACTTCGTTGACCGGAG 339
||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 321 GTGCTCCAATGGGGTCGTCTTCGTCGTCGACATTGACGGAGCACAATTCGTTGACCGGAG 380
Query 340 CTAAATCCGGCTTAGGCCCGGTGATCGAGATGGCGAGCACGTCTCTATTGAATCCGAATC 399
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 381 CTAAATCCGGATTAGGCCCGGTGATCGAGATGGCGAGCACGTCTCTATTGAATCCAAATC 440
Query 400 GGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGTAATTCGAGTAGAGGTACAATAACAG 459
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 441 GGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGGAATTCGAGTAGAGGTACAATAACAG 500
Query 460 TGGGATTACCACCAGACTGGGTTGATGTATCTGAGGAGATTTCAGTTTACATTCAACGTG 519
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TGGGCTTACCACCAGATTGGGTTGATGTATCTGAGGAGATTTCAGTTTACATTCAACGTG 560
Query 520 CAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTG 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTG 620
Query 580 GGGATGGTAAAGAAGATCAACATCAAATCGAGTCTTTGACACAAGAGATCACCTTCCTAT 639
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 621 GGGATGGTAAAGAAGATCAACATCAAATCGAGACTTTGACACAAGAGGTTACCTTCCTAT 680
Query 640 TGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAA 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 TGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAA 740
Query 700 ATGTCAGAAAAAACGTCCAGCGATCTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGC 759
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 741 ATGTCAGGAAAAACGTCCAGCGATCTCTTGCTACGGATCTCCAAAACCTTTCTATGGAGT 800
Query 760 TACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTACAAAAAGAGGATGGATCGG 819
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 801 TACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTACAAAAAGAGGATGGAGCGG 860
Query 820 ATATAGAGATGAATCTGAACGGAAGCAGCTATAATGCAGAAGATGATGACTTTGATGATA 879
|| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 861 ATTTAGAGATGAATCTGAACGGAAGCAGATATAAAGCAGAAGATGATGACTTTGATGATA 920
Query 880 TGGTATTTAGTGAGCATCAAATAAGCAAGATAAAAAAGAGTGAGGAAATATCAGTAGAGA 939
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 921 TGGTATTTAGTGAGCATCAAATGAGCAAGATAAAAAAGAGTGAGGAAATATCAATAGAGA 980
Query 940 GGGAGAAAGAGATTCAACAGGTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGG 999
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 981 GGGAGAAAGAGATTCAACAGGTTGTTGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGG 1040
Query 1000 ATCTTTCCGCGCTTGTGATAGACCAGGGTACGATAGTTGATCGGATTGACTATAATATCC 1059
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1041 ATCTGTCAGCGCTTGTGATAGACCAGGGTACAATAGTTGATCGGATTGACTATAATATCC 1100
Query 1060 AGAACGTTGCTAGTACCGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACAC 1119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 AGAACGTTGCTAGTACAGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACAC 1160
Query 1120 AGAGACAAGGAGGTATGGTGATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGC 1179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1161 AGAGACAAGGAGGTATGGTGATGTGTGCGTCTGTTCTTGTCATTCTCTGCTTCATCATGC 1220
Query 1180 TGGTACTCTTAATCCTCAAGGAGATTCTCTTGTGACACAAGGAGATCCCTCATTATTTTT 1239
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1221 TGGTACTCTTAATCCTCAAGGAGATTCTGTTGTGACACAAGGAGATCCCTCATT-TTTTA 1279
Query 1240 ATTCTTTTGAAACAAGAACACCACA-TTTTTGCGTTGCGGAGTGTTCTCTATCCACAAAA 1298
||||||||||||| |||||||||| |||||||||||||||||||||| | ||||||||
Sbjct 1280 ATTCTTTTGAAACGCGAACACCACAATTTTTGCGTTGCGGAGTGTTCTGT--CCACAAAA 1337
Query 1299 TGGTCC-GAAGAGAAAAACGAACTGTGTTGTCTATCTGGCTC-G---CT------G--GC 1345
|| ||| |||||||||||||||||||||||||||||| |||| | || | ||
Sbjct 1338 TG-TCCTGAAGAGAAAAACGAACTGTGTTGTCTATCTCGCTCAGTGGCTTTTACTGCAGC 1396
Query 1346 -t-tt-t--ttt-ttttttACTTCTTATGGCGTTTACATAGGAGAACATTATCACTTTTG 1399
| || | ||| ||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1397 CTCTTCTGCTTTCTTTTTTATTTCTTATGGCGTTTACATAGGAAAACATTATCACTTTTG 1456
Query 1400 TATTGAATGTTTGTAACTTGGCTTCTTACGAGTTTATAATG-ATTTATTTACATGTAAAG 1458
|||||| ||||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1457 TATTGAGTGTTTGTAAGTTGGCTTCTTACGAGTTTATAATGGATTTATTTAC-TGTAAAG 1515
Query 1459 AA-AT-T-AACCATGATTTTAAGAATCTATGGAGAAGAGATCAGATAGAACTGTAAAGTT 1515
|| || | |||||||||||||||||||| |||||||||||||| |||||||||||| |||
Sbjct 1516 AATATATTAACCATGATTTTAAGAATCTGTGGAGAAGAGATCATATAGAACTGTAACGTT 1575
Query 1516 TGTTCC 1521
||||||
Sbjct 1576 TGTTCC 1581
> AT5G26980.1 | Symbols: SYP41, ATSYP41, ATTLG2A | syntaxin of
plants 41 | chr5:9488148-9490807 REVERSE LENGTH=1748
Length=1748
Score = 876 bits (474), Expect = 0.0
Identities = 859/1037 (83%), Gaps = 57/1037 (5%)
Strand=Plus/Plus
Query 194 TTCTAGGG-TTT-ATA-TTTGAGCTGCT-ATGGCGACTAGGAATCGTACGCTGTTGTTTA 249
|||||||| ||| | | ||||| | | | |||||||| |||||||||||| || ||||||
Sbjct 177 TTCTAGGGATTTCAAATTTTGA-C-GATCATGGCGACGAGGAATCGTACGTTGCTGTTTA 234
Query 250 GGAAGTACAGAAGCTCTCTAAGGAGCGTTC-GTGCTCCAATGGGGTCGTCTTCGTCGTCG 308
|||||||||||| |||||| || |||| || | ||||| || |||||| || | ||
Sbjct 235 GGAAGTACAGAAACTCTCTGAGAAGCG-TCAGAGCTCC-AT--TGTCGTCATC-T--TC- 286
Query 309 ACGGTAACGGAGCACACTTCGTTGACCGGAGCTAAATCCGGC-TTAGGCCCGGTGATCGA 367
| | |||| | | || || | || | | |||| || || |||||||||||
Sbjct 287 A--TTGACGG-G-A-AC-ACGAT--CC-G-G-------CGGCGTT-GGTCCGGTGATCGA 328
Query 368 GATGGCGAGCACGTC-TCTATTGAATCCGAATCGGTCTTATGCTCC-AGTCAGTACCGAG 425
||||||||| || || | |||||||||||||||| ||||| ||||| | | ||||||||
Sbjct 329 GATGGCGAGTACTTCGT-TATTGAATCCGAATCGCTCTTACGCTCCTA-TTAGTACCGAA 386
Query 426 GATCCTGGTAA-TTCGAGTAGAGGTACAATAACAGTGGGATTACCACCAGAC-TGGGTTG 483
|||||||| || ||| |||| |||| | ||||||||||| |||||||||| | |||||||
Sbjct 387 GATCCTGG-AACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAG-CTTGGGTTG 444
Query 484 ATGTATCTGAGGAGATTTCAGTTTACATTCAACGTGCAAGAACCAAAATGGCTGAATTGG 543
|||| ||||||||||| || || | || || |||||||| || ||||||||||| ||||
Sbjct 445 ATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGG 504
Query 544 GAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTGGGGATGGTAAAGAAGATCAACATC 603
||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 505 GAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACAT- 563
Query 604 AA-ATCGAGTCTTTGACACAAGAGATCACCTTCCTATTGAAGAAATCTGAGAAGCAACTT 662
|| || |||||||||||||| ||||| || || ||||||||||| |||||||||||||||
Sbjct 564 AATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTT 623
Query 663 CAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAAATGTCAGAAAAAACGTCCAGCGA 722
|||||||||||||| | || |||||||||||||||||||| || ||||| || |||||
Sbjct 624 CAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGG 683
Query 723 TCTCTTGCTACTGATCTCCAAAACCTTTCTATGGAGCTACGCAAGAAACAGTCTACATAT 782
|||||||| ||||| |||||| |||||||||||||| ||||| |||||||| ||||||
Sbjct 684 TCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATAT 743
Query 783 TTGAAACGTTTGAGACTA-CAAAAAGAGGATGG-ATCGGATATAGAGATGAATCTGAACG 840
|||||||| ||||| | | |||||||||||||| || |||| ||||||||||||||| |
Sbjct 744 TTGAAACGCTTGAGGC-AGCAAAAAGAGGATGGGAT-GGATTTAGAGATGAATCTGAGCA 801
Query 841 GAAGCAGCTATA-ATGCAGAAGATGATGACTTTGATGATATGGTATTTAGTGAGCATCAA 899
||| ||| |||| | | ||||| |||||||||| |||||| || | ||||||||
Sbjct 802 GAAACAGATATAGAC-CTGAAGAGGATGACTTTGGCGATATGTTAA--AC-GAGCATCAG 857
Query 900 ATAAGCAA-GATAAAAAAGAGTGAGGAAATATCAGTAGAGAGGGAGAAAGAGATTCAACA 958
|| ||| ||||||||||||||| ||| |||| |||||||||||||||||||| |||||
Sbjct 858 ATGT-CAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAACA 916
Query 959 GGTTGTCGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGGATCTTTCCGCGCTTGTGAT 1018
|||||| ||||| |||| ||| |||||||| || |||||||||||||| || ||||||||
Sbjct 917 GGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGAT 976
Query 1019 AGACCAGGGTACGATAGTTGATCGGATTGACTATAATATCCAGAACGTTGCTAGTACCGT 1078
||| |||||||| |||||||||||||| |||||||||||| | ||||| |||| ||| ||
Sbjct 977 AGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTGT 1036
Query 1079 CGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACACAGAGACAAGGAGGTATGGT 1138
|| |||||||||||||| || || ||||| || || || |||||||| |||||||||||
Sbjct 1037 TGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGGT 1096
Query 1139 GATGTGTGCATCTGTTCTTGTCATTCTCTGCTTCATCATGCTGGTACTCTTAATCCTCAA 1198
|| ||| ||||| || |||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1097 GAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCAA 1156
Query 1199 GGAGAT-TCTCTTGTGA 1214
||| || | ||||||||
Sbjct 1157 GGAAATAT-TCTTGTGA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75049814775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5