BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477874
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05800.1 | Symbols: AIF1 | AtBS1(activation-tagged BRI1 supp... 1146 0.0
> AT3G05800.1 | Symbols: AIF1 | AtBS1(activation-tagged BRI1 suppressor
1)-interacting factor 1 | chr3:1727306-1728296 FORWARD
LENGTH=991
Length=991
Score = 1146 bits (620), Expect = 0.0
Identities = 752/814 (92%), Gaps = 15/814 (2%)
Strand=Plus/Plus
Query 1 GTGGTTCTACAAAAGTCTTGTGAATGTCTTCTGAACAAGGAAATGGATCGAATCCTTCCA 60
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GTGGTTCTATAGATTTCTTGTGAATGTCTTCTGAACAAGGAAATGGATCGAATCCTTCCA 207
Query 61 CGTCGCCGGAGGTAGAAGGGACTAAAACAATCCCTTTTCGCCGGAGATTGCAAAGAGCAC 120
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 208 CGTCACCGGAGGTAGAAGGGACTAAAACAATCCCCTTTCGCCGGAGATTGCAAAGAGGAC 267
Query 121 AAAGAGTGTTGGCTCCAAAGTTGATGGAGGCTCTCCGTCGATCAAGGATAAGCTCGGAAG 180
||||||| || ||||||||| ||||||||||||| |||||||||||| ||||||| ||||
Sbjct 268 AAAGAGTTTTCGCTCCAAAGCTGATGGAGGCTCTACGTCGATCAAGGGTAAGCTCTGAAG 327
Query 181 AAGCTCCGGCGAGCCATCTTAGTCGTAGATGGAGAGCCACAACGGCGCAGAAGGTATATT 240
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 AAGCTCCGGTAAGGCATCTTAGTCGTAGATGGAGAGCCACAACGGCGCAGAAGGTATATT 387
Query 241 CCTTGAAGCTCTACGATGCTCTTCAGCGATCGCGGCGCAGCGCAACAGTTCGGGACACGG 300
|| | ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 388 CCCTAAAGCTCTACGACGCTCTTCAACGATCGCGGCGGAGCGCAACAGTCCGGGACACGG 447
Query 301 CCGACAAAGTCCTTGCGACGACGGCTCGTGGTGTAACTCGGTGGAGCCGAGCCATATTGG 360
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||
Sbjct 448 CCGACAAAGTCCTTGCGACGACCGCTCGTGGTGCAACTCGGTGGAGCCGAGCCATTTTGG 507
Query 361 TGAGTCGATTCGGGACGAGTCTGAGGCGGCGCAGGAATACAAAACCGGCGT-GTGCATTG 419
| ||||||||||| ||||||||||||||||| |||||||| |||||||||| | |||||
Sbjct 508 TTAGTCGATTCGGAACGAGTCTGAGGCGGCGTAGGAATACCAAACCGGCGTCG-GCATTA 566
Query 420 GCAGCGGCGGTCAGGGGAAGTGGTGGGAG-G--AGGAGGAGGAAGGTGTCGGCGGTGGGA 476
|| |||||| |||||||||||||||| || | |||||||||||| | ||||||||||||
Sbjct 567 GCTGCGGCGATCAGGGGAAGTGGTGGAAGTGGGAGGAGGAGGAAGTTATCGGCGGTGGGA 626
Query 477 AGTCGGGTCCGGGTTTTGGGTGGGTTGGTGCCGGGTTGCCGGAGAACAGCCTTACCGGAG 536
| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 627 AATCGGGTCCGGGTTTTGGGTGGGTTGGTGCCGGGTTGCCGGAGAACGGCGTTACCGGAG 686
Query 537 CTTTTGGATGAGACAGCAGATTACATAGCGGCGTTGGAAATGCAAGTCCGAGCCATGACA 596
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 687 CTTTTGGACGAGACAGCAGATTACATAGCGGCTTTGGAAATGCAAGTCCGAGCCATGACA 746
Query 597 GCTCTATCAAAGATTCTGTCTGAGTTTCAGCCGTCTACTAAACTCGGCTCGGCTTTATAG 656
|||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||
Sbjct 747 GCTCTATCAAAGATTCTGTCGGAGCTTCAGCCGTCTACTAATCTCGGCTCGGCTTTATAG 806
Query 657 CCGAGTGCATAAGCCGATGGTGTGTAAAATTTGTTTCAATTAATTCTTTTACGATTATAT 716
||||||| ||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct 807 CCGAGTGTATAAGCCGATG------AA--TTTGTTTCAATTAATTCTTTTACGATTTTAT 858
Query 717 CGTGGGAATGTCTTATTGTCTTTAATGATTTGTTTGCCCTG-aaaaaaaaaaT-GTCAAA 774
||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct 859 CGTGGGAATGTCTTATTGTTTTTAATGATTTGTTTGCCCTGGAAAAAAAAAATTGTCAAA 918
Query 775 ATCATCACGAGTTGGAGGAAAATACTATGTTTTT 808
|||||||||||||||| |||||||||||||||||
Sbjct 919 ATCATCACGAGTTGGACGAAAATACTATGTTTTT 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5