BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477875

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05810.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   656    0.0  


> AT3G05810.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED 
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IGR protein 
motif (InterPro:IPR019083); BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G26800.1); Has 62 
Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr3:1730976-1732384 
REVERSE LENGTH=685
Length=685

 Score =  656 bits (355),  Expect = 0.0
 Identities = 436/475 (92%), Gaps = 5/475 (1%)
 Strand=Plus/Plus

Query  18   CCGGCGATGGCGTGGACACGACTGGTTCAGAGCGCGAGAGCAGCTCTAGGGACAACGCAC  77
            ||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |||| 
Sbjct  58   CCGACGATGGCGTGGACACGATTGATTCAGAGCGCGAGAGCAGCTCTAGGGACAGCGCAA  117

Query  78   TCGAGTTCGACTCTTGGCCTCCCCAGATT---CTACTCCAAACCAGCTACTTATTTCGTG  134
            ||| | ||||||||||||||||| |||||   || |||||||||||| ||||||||||||
Sbjct  118  TCGTGCTCGACTCTTGGCCTCCCTAGATTCCACTCCTCCAAACCAGCCACTTATTTCGTG  177

Query  135  AAGGTTGGGATTCCAGAGTTTCTAGGCGGGATTGGCAGAGGAGCTGAGACTCACATTGCC  194
            ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  178  AAGGTAGGGATTCCAGAGTTTCTAGGTGGGATTGGAAGAGGAGCTGAGACTCACATTGCC  237

Query  195  AAAATTGAAACTGAGATCGGTGACCTTCATAAGCTGCTTGTCACCCGTACCCTCAGACTC  254
            ||||||||||||||||| ||||||||||||||||| ||||| || ||||| |||||||||
Sbjct  238  AAAATTGAAACTGAGATTGGTGACCTTCATAAGCTTCTTGTGACGCGTACTCTCAGACTC  297

Query  255  AAGAAGCTTGGCATTCCTTGCAAACATCGGAAACTTATACTCAAGTATGGCCAGAAATAC  314
            ||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct  298  AAGAAACTTGGCATTCCTTGCAAACATAGGAAACTGATACTGAAGTATGGCCAGAAATAC  357

Query  315  AGGTTGGGGCTGTGGAAACCTAGAGCTGACGCTATTAAGGCCTGATCAAGTCTCTATGTT  374
            ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  AGGTTAGGGCTATGGAAACCTAGAGCTGACGCTATTAAGGCCTGATCAAGTCTCTATGTT  417

Query  375  G-AACTGTCAGTCTCTCGACTGCTGGAATAAGCTGTAGTACTTAAATGGTCATTGTCAAA  433
            | |||||| |||||||||||||| |||||||||| |||||||| |||| |||||||||||
Sbjct  418  GTAACTGTGAGTCTCTCGACTGCCGGAATAAGCTCTAGTACTTGAATGATCATTGTCAAA  477

Query  434  CCATTTCAGTATTGGACAATATAGACTGTACAAGTAATGTTGGTTTTTTATGTTT  488
            ||| ||||||||||||||| |||||| ||| ||||||||||||||||  ||||||
Sbjct  478  CCAGTTCAGTATTGGACAAAATAGACAGTAGAAGTAATGTTGGTTTTG-ATGTTT  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28834400378


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5