BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477878
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05840.2 | Symbols: ATSK12 | Protein kinase superfamily prot... 2494 0.0
AT5G26751.1 | Symbols: ATSK11, SK 11 | shaggy-related kinase 11... 1349 0.0
> AT3G05840.2 | Symbols: ATSK12 | Protein kinase superfamily protein
| chr3:1740020-1743163 FORWARD LENGTH=1672
Length=1672
Score = 2494 bits (1350), Expect = 0.0
Identities = 1580/1686 (94%), Gaps = 35/1686 (2%)
Strand=Plus/Plus
Query 28 ATCAGACCAACAACAAAAAGGAGATAAAGAGAAGGGGA-T--TCATCATC-ATCAATCCT 83
|||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||||
Sbjct 1 ATCAGACCAACAACAAAAAGGAGATAAAGAGAAGAGGATTCATCATCATCAATCAATCCT 60
Query 84 TCA--TTATGGATCTACTCATATCTTGATTCTTCTCTTCCATCTCt-ttttttCTGGGC- 139
||| ||||||||||||||||||||||||||||| |||| |||||| |||||| |
Sbjct 61 TCATTTTATGGATCTACTCATATCTTGATTCTTC-CTTCTATCTCTCCCTTTTCT-TCCA 118
Query 140 T-TCCCCGGGT-TGAGTTT-TTAGATTTGAAGA--GTGACAAAGGAAGAATCTGtttttt 194
| || | || |||| |||||||||| ||||||||||||||||| |||| |
Sbjct 119 TCTCTTTTTCTCTGGGTTTCCCCGATTTGAAGAGCGTGACAAAGGAAGAATC--TTTTAT 176
Query 195 ttttACAAATTCTTCTGTTTGT-ATCTTGGGATGGCCTCGGTGGGCATAGAGCCTAGTGC 253
| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 177 TAAAACAAATTCTTCTGTTT-TAATCTTGGGATGGCCTCGGTGGGCATAGAGCCTAGTGC 235
Query 254 CGCGGTTAGAGATTCTACTGGAAACGTTACTGATGTTGATAGATTACCTGAGGAGATGAA 313
|||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 236 CGCGGTTAGAGAATCTACTGGAAACGTTACTGATGCTGATAGATTACCCGAGGAGATGAA 295
Query 314 GGACATGAAAATTCAAGATGATAAAGAAATGGAAGCTACAATTGTCAATGGCAATGTGAC 373
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 296 GGACATGAAAATTCAAGATGATAAAGAAATGGAAGCTACGATTGTTAATGGCAATGTGAC 355
Query 374 TGAGACTGGCCATATTATAGTAACTACTATAGGAGGAAGAAATGGCCAGCCAAAACAGAC 433
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGAGACTGGCCATATAATAGTAACTACTATAGGAGGAAGAAATGGCCAGCCAAAACAGAC 415
Query 434 AATCAGTTACATGGCGGAGCGAGTTGTTGGACACGGCTCCTTTGGTGTTGTGTTTCAGGC 493
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 416 AATCAGTTACATGGCGGAGCGAGTTGTTGGACATGGCTCCTTTGGTGTTGTGTTTCAGGC 475
Query 494 GAAGTGCTTGGAAACTGGAGAAACTGTTGCGATAAAGAAAGTTCTGCAAGATCGGAGGTA 553
|| || || ||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 476 CAAATGTTTAGAAACAGGAGAAACTGTTGCTATAAAGAAAGTTCTACAAGATCGGAGGTA 535
Query 554 CAAGAACCGTGAGCTTCAAACAATGAGGCTACTTGACCATCCGAATGTTGTGTCTTTGAA 613
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 536 CAAGAATCGTGAGCTTCAAACAATGAGGCTACTTGACCATCCAAATGTTGTGTCTTTGAA 595
Query 614 ACATTGCTTCTTCTCTACAACTGAAAAAGACGAGCTTTATCTTAACTTGGTCCTGGAATA 673
|||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||
Sbjct 596 ACATTGTTTCTTCTCTACAACCGAAAAAGATGAGCTTTATCTCAACTTGGTTCTGGAATA 655
Query 674 CGTTCCAGAAACTGTGCATCGCGTCATCAAACACTACAACAAACTTAACCAACGAATGCC 733
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGTTCCGGAAACTGTGCACCGCGTCATCAAACACTACAACAAACTTAACCAACGAATGCC 715
Query 734 TCTCGTTTACGTCAAACTTTACACATATCAGATTTTTAGGTCCTTGTCCTACATTCACCG 793
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 716 TCTCGTTTACGTCAAACTTTACACTTATCAGATTTTTAGGTCCTTATCCTACATTCACCG 775
Query 794 ATGTATCGGTGTGTGTCATCGTGACATAAAACCTCAAAACTTGTTGGTAAATCCACACAC 853
||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 776 ATGTATCGGCGTATGTCATCGAGACATCAAACCTCAAAACTTGTTGGTAAATCCACACAC 835
Query 854 TCATCAAGTGAAACTATGCGATTTTGGAAGTGCGAAAGTATTGGTAAAAGGAGAGCCAAA 913
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 836 TCATCAAGTGAAACTATGCGATTTTGGAAGTGCGAAAGTATTGGTTAAAGGAGAGCCAAA 895
Query 914 CATTTCATATATTTGCTCAAGGTATTACAGAGCACCTGAGCTCATTTTTGGAGCCACCGA 973
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CATTTCATACATTTGCTCGAGGTATTACAGAGCACCTGAGCTCATTTTTGGAGCCACCGA 955
Query 974 GTATACTACAGCCATTGATGTCTGGTCTGCAGGATGTGTTCTCGCCGAGCTTCTTCTCGG 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GTATACTACAGCCATTGATGTCTGGTCTGCAGGATGTGTTCTCGCCGAGCTTCTTCTCGG 1015
Query 1034 GCAGCCATTGTTCCCTGGTGAGAGCGGTGTTGATCAACTTGTAGAGATTATAAAGGTTTT 1093
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GCAGCCATTGTTCCCGGGTGAGAGCGGTGTTGATCAACTTGTAGAGATTATAAAGGTTTT 1075
Query 1094 GGGAACACCAACAAGAGAAGAAATCAAATGCATGAACCCAAATTACACAGAGTTCAAATT 1153
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1076 GGGAACACCAACAAGGGAAGAAATCAAATGCATGAACCCGAATTACACAGAGTTCAAATT 1135
Query 1154 TCCTCAGATAAAAGCTCATCCATGGCATAAGATATTCCACAAGAGAATGCCTCCAGAAGC 1213
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1136 TCCTCAGATTAAAGCTCATCCATGGCATAAGATTTTCCACAAGAGAATGCCTCCAGAAGC 1195
Query 1214 TGTTGATTTAGTCTCAAGGCTTCTTCAATACTCTCCCAATCTCCGTTGTGCTGCTCTTGA 1273
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGTTGATTTGGTCTCAAGGCTTCTTCAATACTCTCCCAATCTCCGTTGTGCTGCTCTTGA 1255
Query 1274 TTCATTGGTCCACCCATTCTTTGACGAGCTAAGAGATCCGAATGCGCGATTACCCAACGG 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTCATTGGTCCACCCATTCTTTGACGAGCTAAGAGATCCGAATGCGCGATTACCCAACGG 1315
Query 1334 ACGTTTCCTTCCACCGCTCTTCAACTTTAAGCCTCATGAGCTTAAAGGTGTGCCTGTGGA 1393
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1316 ACGTTTCCTTCCACCGCTCTTTAACTTTAAGCCTCATGAACTTAAAGGTGTGCCTGTGGA 1375
Query 1394 GATGGTGGCTAAGTTAGTTCCAGAACATGCGAGGAAGCAATGTCCGTGGCTTGGTTTGTG 1453
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1376 GATGGTGGCGAAGTTAGTTCCAGAACATGCGAGGAAGCAATGTCCGTGGCTCAGTTTGTG 1435
Query 1454 ATTTGTTCTGCTGTTACCCGCAAACACGGAAACTAGAGCAAAGCAGTCTGAGAAATTCAT 1513
||||||||| | ||| ||||||||| ||||||||||||||||||| |||| ||||||
Sbjct 1436 ATTTGTTCT-C----ACCTGCAAACACGAAAACTAGAGCAAAGCAGTC-GAGATATTCAT 1489
Query 1514 CTCTTCTCT-CT-TC-C-TTCTCTGtattaatattattattattattatCATATCTCAAA 1569
||||||||| || || | |||||||||||||||||||||| | || ||||||||||||
Sbjct 1490 CTCTTCTCTTCTCTCTCCTTCTCTGTATTAATATTATTAT-A--ATGATCATATCTCAA- 1545
Query 1570 TCTGAAGATTTAGTAATCCTTTGTTTGTTGTATGAGTAGAGA--GAGTGAATCATTTGTG 1627
||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1546 TCTGATGATTTAGTAACCCTTTGTTTGTTGTATGAGTAGAGAAAGAGTGAATCATTTGTG 1605
Query 1628 GGGGTTATGATATTGTATAAGCCAACAAAGATTAtttttttAAGAGAGTTTGGTGTTTTC 1687
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1606 GGGGTTATGATATTGTATAAGCCAACAAAGATTATTTTTTAAAGAGAGTTTCGTGTTTTC 1665
Query 1688 TGTCTC 1693
||||||
Sbjct 1666 TGTCTC 1671
> AT5G26751.1 | Symbols: ATSK11, SK 11 | shaggy-related kinase
11 | chr5:9399377-9402476 REVERSE LENGTH=1666
Length=1666
Score = 1349 bits (730), Expect = 0.0
Identities = 1039/1188 (87%), Gaps = 22/1188 (2%)
Strand=Plus/Plus
Query 281 TACTGATGTTGATAGATTACCTGAGGAGATGAAGGACATGAAAATTCAAGATGATAAAGA 340
||||| |||||||| ||| ||||| || ||||| ||||||||||||| || ||||||||
Sbjct 288 TACTGGTGTTGATAAATTGCCTGAAGAAATGAATGACATGAAAATTCGTGACGATAAAGA 347
Query 341 AATGGAAGCTACAATTGTCA-ATGGCAATGTG-ACTGAGACTGGCCATATTATAGTAACT 398
||||||||| ||| | || | |||| |||| | || |||||||| ||||| || || |||
Sbjct 348 AATGGAAGCGACAGTGGT-AGATGGAAATG-GAACAGAGACTGGACATATCATTGTGACT 405
Query 399 ACTATAGGAGGAAGAAATGGCCAGCCAAAACAGACAATCAGTTACATGGCGGAGCGAGTT 458
||||| || || ||||||||||| |||||||||||||| || |||||||| ||||| |||
Sbjct 406 ACTATTGGTGGTAGAAATGGCCAACCAAAACAGACAATTAGCTACATGGCTGAGCGTGTT 465
Query 459 GTTGGACACGGCTCCTTTGGTGTTGTGTTTCAGGCGAAGTG-CTTGGAAACTGGAGAAAC 517
||||| ||||| || |||||||||||||| || ||||| || ||| || || ||||||||
Sbjct 466 GTTGGTCACGGATCTTTTGGTGTTGTGTTCCAAGCGAAATGTCTT-GAGACAGGAGAAAC 524
Query 518 TGTTGCGATAAAGAAAGTTCTGCAAGATCGGAGGTACAAGAACCGTGAGCTTCAAACAAT 577
||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| ||
Sbjct 525 TGTTGCGATAAAGAAAGTTTTACAAGATAGGAGGTACAAGAACCGTGAGCTTCAAACCAT 584
Query 578 GAGGCTACTTGACCATCCGAATGTTGTGTCTTTGAAACATTGCTTCTTCTCTACAACTGA 637
|||||||||||||||||| |||||||||||| |||||||||| |||||||| || |||||
Sbjct 585 GAGGCTACTTGACCATCCTAATGTTGTGTCTCTGAAACATTGTTTCTTCTCAACCACTGA 644
Query 638 AAAAGACGAGCTTTATCTTAA-CTTGGTCCTGGAATACGTTCCAGAAACTGTGCATCGCG 696
|||||| |||||||| || || ||| || || || ||||||||||||||||| ||||| |
Sbjct 645 AAAAGATGAGCTTTACCTCAATCTT-GTTCTTGAGTACGTTCCAGAAACTGTTCATCGTG 703
Query 697 TCATCAAACACTACAACAAACTTAACCA-ACGAATGCCTCTCGTTTACGTCAAACTTTAC 755
| |||||||||||||||||||| || || | |||||||||| | |||||||||||||||
Sbjct 704 TTATCAAACACTACAACAAACTGAATCAGA-GAATGCCTCTTATATACGTCAAACTTTAC 762
Query 756 ACATATCAGATTTTTAG-GTCCTTGTCCTACATTCACCGATGTATCGGTGTGTGTCATCG 814
|| |||||||||||||| | |||| || |||||||||||||| || ||||||||||||||
Sbjct 763 ACTTATCAGATTTTTAGAG-CCTTATCTTACATTCACCGATGCATTGGTGTGTGTCATCG 821
Query 815 TGACATAAAACCTCAAAACTTGTTGGTAAATCCACACACTCATCAAGTGAAA-CTATGCG 873
||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |
Sbjct 822 TGACATAAAACCTCAAAACTTGTTGGTAAATCCGCACACTCATCAAGT-AAAGCTATGTG 880
Query 874 ATTTTGGAAGTGCGAAAGTATTGGTAAAAGGAGAGCCAAACATTTCATATATTTGCTCAA 933
||||||||||||| |||||||||||||||||||| ||||||||||| || || ||||| |
Sbjct 881 ATTTTGGAAGTGCAAAAGTATTGGTAAAAGGAGAACCAAACATTTCCTACATCTGCTCGA 940
Query 934 GGTATTACAGAGCACCTGAGCTCATTTTTGGAGCCACCGAGTATACTACAGCCATTGATG 993
||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||
Sbjct 941 GGTATTACAGAGCACCTGAACTTATTTTTGGAGCAACCGAGTATACGACAGCCATTGATG 1000
Query 994 TCTGGTCTGCAGGATGTGTTCTCGCCGAGCTTCTT-CTCGGGCAGCCATTGTTCCCTGGT 1052
|||||||||||||||||||||| || || || || || || ||||| ||||||||||||
Sbjct 1001 TCTGGTCTGCAGGATGTGTTCTAGCTGAACTA-TTGCTTGGACAGCCCTTGTTCCCTGGT 1059
Query 1053 GAGAGCGGTGTTGATCAACTTGTAGAGATTATAAAGGTTTTGGGAACACCAACAAGAGAA 1112
|||||||||||||||||||||||||||||||| ||||| |||||||| || || ||||||
Sbjct 1060 GAGAGCGGTGTTGATCAACTTGTAGAGATTATCAAGGTCTTGGGAACGCCTACTAGAGAA 1119
Query 1113 GAAATCAAATGCATGAACCCAAATTACACAGAGTTCAAATTTCCTCAGATAAAAGCTCAT 1172
|||||||| |||||||||||||| ||||| || |||||||| |||||||| |||||||||
Sbjct 1120 GAAATCAAGTGCATGAACCCAAACTACACGGAATTCAAATTCCCTCAGATTAAAGCTCAT 1179
Query 1173 CCATGGCATAAGATATTCCACAAGA-GAATGCCTCCAGAAGCTGTTGATTTAGTCTCAAG 1231
|||||||| ||||| |||||||| | | ||||||||||||||||||||||| ||||||||
Sbjct 1180 CCATGGCACAAGATTTTCCACAA-ACGCATGCCTCCAGAAGCTGTTGATTTGGTCTCAAG 1238
Query 1232 GCTTCTTCAATACTCTCCCAATCTCCGTTGTGCTGCTCTTGATTCATTGGTCCACCCATT 1291
||||||||||||||||| ||||| || |||| ||||| || |||| |||||||||||
Sbjct 1239 ACTTCTTCAATACTCTCCTAATCTACGAAGTGCCGCTCTCGACACATTAGTCCACCCATT 1298
Query 1292 CTTTGACGAGCTAAGAGATCCGAATGCGCGAT-TACCCAACGGACGTTTCCTTCCACCGC 1350
|||||| ||| ||||||| || || || || | |||| || |||||||||||||||||||
Sbjct 1299 CTTTGATGAGTTAAGAGACCCAAACGCACG-TCTACCTAATGGACGTTTCCTTCCACCGC 1357
Query 1351 TCTTCAACTTTAAGCCTCATGAGCTTAAAGGTGTGCC-TGTGGAGATGGTGGCTAAGTTA 1409
| |||||||| |||||||| ||||| |||||||| || | |||||||||| |||||||||
Sbjct 1358 TTTTCAACTTCAAGCCTCACGAGCTGAAAGGTGTACCAT-TGGAGATGGTAGCTAAGTTA 1416
Query 1410 GTTCCAGAACATGCGAGGAAGCAATGTCCGTGGCTTGGTTTGTGATTT 1457
|| || || ||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 1417 GTACCTGAGCATGCAAGGAAGCAGTGTCCTTGGCTCGGTTTGTGATTT 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684308515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5