BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477888
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05910.1 | Symbols: | Pectinacetylesterase family protein |... 2606 0.0
> AT3G05910.1 | Symbols: | Pectinacetylesterase family protein
| chr3:1764318-1767620 REVERSE LENGTH=1819
Length=1819
Score = 2606 bits (1411), Expect = 0.0
Identities = 1640/1742 (94%), Gaps = 49/1742 (3%)
Strand=Plus/Plus
Query 1 TAAATAAAACTCCAACCGTGAATCCAGCCATGAAACT-TTTTTAGAAAATCCCttttttt 59
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 88 TAAATAAAACTCCAACCGTGAATCCAGCCATGAAACTCTTTTTAGAAAAT-CCTTTTTTA 146
Query 60 tAATAAA-AA------TAATTC--CTTCTTC-AC--TTA-TT---C-TTCTTCG----TT 98
||| ||| || | ||| ||||||| | ||| || | || || | ||
Sbjct 147 TAACAAATAATTCCTCTGCTTCTTCTTCTTCTTCGTTTATTTCACCTTTTTTGGTTTCTT 206
Query 99 TAGCCCAG-AAAAGCCCATTCtttttttCT-TTCTTGAATATTTTATTCACACTGTTCGT 156
|||| ||| ||||||||||||||||||||| |||||| ||||||| ||| ||||| |||
Sbjct 207 TAGCTCAGAAAAAGCCCATTCTTTTTTTCTATTCTTGTTTATTTTAATCATACTGTGCGT 266
Query 157 TTCTACAAAGTTTGTTCCTTTCTTCTTCAACTCTCTCACTCACAGTCACAGAGATCTGTT 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 TTCTACAAAGTTTGTTCCTTTCTTCTTCAACTCTCTCACTCACAGTCACAGAGATCTGTT 326
Query 217 GATCTCTTTCttttttttGCTTTCACTCTTCACCTTCCAGT--GAGAGAGTGAGAGAAAA 274
||| |||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 327 --TCT-TTTC-TTTTTTTGCTTTCACTCTTC-TCTTCCAGTGAGAGAGAGTGAGAGAAAA 381
Query 275 TGGAGAAGCTTTTGTTAGTAGGGTTTGTTGTGGCTGGGATAATTCTGGGAACTCAAGCAA 334
||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 382 TGGTGAAGCTTTTGTTAGTAGGGTTTGTTGTGGCTGGTATAATACTGGGAACTCAAGCAA 441
Query 335 ATGAATATTTAGATTTCAATCTGACAGAAATAGATCGCATTGAGGAATTAGAGTTTGGAT 394
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATGAATATTTAGATTTCAATGTGACAGAAATAGATCGCATTGAGGAATTAGAGTTTGGAT 501
Query 395 TCTCCAAATATAGCTCCAATTTAAACCCTTTAATGGTTGGTCTCACCCTTATCAGAGGAG 454
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 502 TTTCCAAATATAGCTCCAATTTGAACCCTTTAATGGTTGGTCTCACCCTTATCAGAGGAG 561
Query 455 CTGATTCTGGAGCTGTTTGTTTGGATGGAACATTGCCCGGATATCACTTGCACCGTGGAC 514
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 562 CTGATTCTGGAGCTGTTTGTTTGGATGGAACATTGCCTGGATATCACTTGCACCGTGGAC 621
Query 515 ATGGATCTGGAGCTAATAGCTGGCTCATTCAATTGGAGGGAGGAGGATGGTGCAACAACA 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 ATGGATCTGGAGCTAATAGCTGGCTCATTCAATTGGAGGGAGGAGGATGGTGCAACAACA 681
Query 575 TCAGGACCTGTGTATACCGGAAGACGACTCGACGTGGTTCCTCTAATTATATGGAGAAAC 634
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 682 TCAGGACCTGTGTATACAGGAAGACTACTCGACGTGGTTCCTCTAATTATATGGAGAAAC 741
Query 635 AGCTTCAGTTTACAGGAATACTGAGTGACAAAGCTCAAGAAAATCCTGACTTCTTCAACT 694
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 742 AGCTTCAGTTTACAGGAATACTGAGTGACAAAGCTCAAGAAAATCCTGACTTTTTCAACT 801
Query 695 GGAATAGAGTTAAGCTTCGTTACTGTGATGGTGCTTCTTTCAGTGGAGATGGCCAGAATC 754
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 802 GGAATAGAGTTAAGCTTCGTTACTGCGATGGCGCTTCTTTCAGTGGAGATGGCCAGAATC 861
Query 755 AGGCTGCACAGCTTCAGTTTAGAGGAGAGCGCATCTGGAGAGCGGCAATAGATGATTTGA 814
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 862 AGGCTGCACAACTTCAGTTTAGAGGAGAGCGTATCTGGAGAGCCGCAATAGATGATTTGA 921
Query 815 AGGCGAATGGAATGCGATATGCCAACCAGGCACTTCTCTCTGGATGCTCTGCTGGTGGTT 874
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 922 AGGCGAATGGAATGCGATACGCCAATCAGGCACTTCTCTCCGGATGCTCTGCTGGTGGTT 981
Query 875 TAGCAGCAATCTTGCGCTGCGATGAGTTTAGGAACTTGTTCCCTGGATCAACCAAAGTCA 934
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 982 TAGCAGCAATCTTGCGCTGCGATGAGTTTAGGAACTTATTCCCTGGATCAACCAAAGTCA 1041
Query 935 AGTGCTTGAGTGATGCAGGCTTGTTCTTGGACACAGCCGATGTTTCAGGCGGCCGCACAA 994
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1042 AGTGCTTGAGTGATGCAGGCTTGTTCTTGGACACTGCCGATGTTTCAGGCGGCCGCACAA 1101
Query 995 TCAGGAACTTATACAATGGTGTCGTAGAATTGCAGAGTGTGAAGAACAATCTTCCACGTA 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 TCAGGAACTTATACAATGGTGTCGTAGAATTGCAGAGTGTGAAGAACAATCTTCCACGTA 1161
Query 1055 TATGCACAAACCATCTCGATCCAACCTCGTGTTTCTTCCCACAAAATCTGATCAGTCAGA 1114
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1162 TATGCACAAACCATCTTGATCCAACCTCGTGTTTCTTCCCACAAAATCTGATCAGTCAAA 1221
Query 1115 TGAAAACTCCACTTTTTATCGTCAACGCAGCATACGATACATGGCAGATTCAAAGCAGTA 1174
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1222 TGAAAACTCCACTTTTTATCGTCAACGCAGCATATGATACATGGCAGATTCAAAGCAGTA 1281
Query 1175 TAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCATGACTGCAGACTAAACCATGGCA 1234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1282 TAGCTCCAACATCAGCTGATCCTAGTGGATTTTGGCATGACTGCAGACTAAACCATGGAA 1341
Query 1235 AATGTACTCCTGCACAATTGAGATTCTTGCAAGGATTCAGGGATCAGATGCTTAGAGTAG 1294
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1342 AATGTACTCCTGCACAGTTGAGATTCTTGCAAGGATTCAGGGAACAGATGCTTAGAGTAG 1401
Query 1295 TCAGGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACT 1354
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACT 1461
Query 1355 GCCAAACCGAGAGGCAAGATACTTGGTTTGCCGATGATTCTCCTGTCATCAGGAAAAAGG 1414
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1462 GCCAAACCGAGAGACAAGATACTTGGTTTGCCGATGATTCTCCTGTTATCAGGAAAAAGG 1521
Query 1415 CCGTGGCAATAGCTGTAGGAGATTGGTATTTCGATAGAGCGGAAGTGAAGTTAGTCGATT 1474
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 CGGTGGCAATAGCTGTAGGAGATTGGTATTTCGATAGAGCGGAAGTGAAGTTAGTCGATT 1581
Query 1475 GCCCTTACCCGTGTGACAAGAGCTGCCACAACTTGGTGTTCAGATGATTCATTGATTATG 1534
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1582 GCCCATACCCGTGTGACAAGAGCTGCCACAACTTGGTGTTCAGATGATTGTTTGACTATG 1641
Query 1535 TTTCTTTCTTCTCTC--ATATATACATACCTT------T--CTTTCTTTCAAAAGGAAAG 1584
|| |||| ||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1642 TT-CTTTATTCTCTCTCATATATACATACCTTAGAAAATTTCTTTCTTTCAAAAGGAAAG 1700
Query 1585 ATTTTGTATCCTT-GGTAGTAACCAATGCCTCATTGGTATATATGATTAAGCGTATCCTG 1643
||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 1701 ATTTTGTATCCTTTGGTAGTAACCAATGCCTCATTGGTATAT--GATTAAGTGTATCGTG 1758
Query 1644 GAAAACCATAATaaaaaaa-aaaaCCAA-CAAAGTTTGCTTAAAAAGAGTTCAAATGTAA 1701
||||| ||||||||||||| ||||| || ||||||||||||||||||||||||| |||||
Sbjct 1759 GAAAATCATAATAAAAAAACAAAACAAAACAAAGTTTGCTTAAAAAGAGTTCAA-TGTAA 1817
Query 1702 TC 1703
||
Sbjct 1818 TC 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85391127045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5