BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477889
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05920.1 | Symbols: | Heavy metal transport/detoxification ... 815 0.0
> AT3G05920.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr3:1768790-1769586 REVERSE LENGTH=646
Length=646
Score = 815 bits (441), Expect = 0.0
Identities = 583/646 (90%), Gaps = 32/646 (5%)
Strand=Plus/Plus
Query 1 AATAACTTCATCTCTGCCTTCTTCATTCCTCTAATCCA----T-T---TC-T--CT-ATC 48
||||||||| ||||| |||||||||||||| ||||||| | | || | || |||
Sbjct 1 AATAACTTCTTCTCTTCCTTCTTCATTCCTTTAATCCATTTTTCTCGATCTTGGCTAATC 60
Query 49 CATCATGACTGTCAAGAAAGTTGAAATCAAGGTAGATATAAACTGCGGAAAATGCAACAG 108
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 61 CATCATGACTGTCAAGAAAGTTGAGATCAAGGTGGATATAAACTGTGGAAAATGCAACAG 120
Query 109 CGCAATCATGGAAGCAGTCACAGAGATAGAAGGTGTGAATCATATTTCATTAGATGATGG 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CGCAATCATGGAAGCAGTCACAGAGATAGAAGGTGTGAATCATATTTCATTAGATGAAGG 180
Query 169 GAATAGTATACTCACCGTGGTGGGGACAATGGATCCGGTCTGCGTTGCAACAAGACTGAA 228
||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 181 AAATAGTATACTTACCGTGGTGGGGACAATGGATCCGGTCTGCGTAGCAACAAGGCTGAA 240
Query 229 GAAGATTAAACAGAAACCTGTAATCATTAGCGTTGGACCACCACCAAAACCTCCTGAGCC 288
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGATTAAACAGAAACCTGTGATCATTAGCGTTGGACCACCACCAAAACCTCCTGAGCC 300
Query 289 ACCAAAGCCTCCAGAGCCTGAGAAACCAAAGCCTCCACCAACACCTGAACCACCAAAGCA 348
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 301 ACCAAAGCCTCCAGAGCCTGAAAAACCAAAGCCTCCACCAGCACCTGAACCACCAAAGCA 360
Query 349 CGTATGCAAGCCACCTTACTGCAACAGTTGTGATGTTGTGTCTGTTACTACATATGAAAG 408
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TGTATGCAAGCCACCTTACTGCAACAGTTGTGATGTTGTGTCTGTTACTACCTATGAAAG 420
Query 409 TGGAAGCGGCTGCACCATTCTTTGAGTCCTGTATCTTGTACCATAGCCTTCATGTTAAG- 467
|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 421 TGGAAGCGGCTGCACCATTCTTTGAGTCATATATCGCGTACCATAGCCTTCATGTTAAGT 480
Query 468 CCTATATTTAGCCAATACTAATTTATCATGTTCTCATCCtttttt-ttt-t--------- 516
||| ||||||||||||||||||| ||||||||||||| ||||||| ||| |
Sbjct 481 CCTGTATTTAGCCAATACTAATTCATCATGTTCTCATGCTTTTTTGTTTATTTCTTTTTC 540
Query 517 --AAATAAGAATCTCGGTTGTTTGTCCCTCACCTGTTT-TCAATTAGTCGCTTGTTTGAC 573
||||| ||||||| |||||||||||||| ||||||| | |||||||||||| ||||||
Sbjct 541 TCAAATATGAATCTCTGTTGTTTGTCCCTCCCCTGTTTAT-AATTAGTCGCTTCTTTGAC 599
Query 574 ACAAG---TCGCATGAGTTTCATGCTAAAGAAAAGGAAAGTTCAAA 616
||||| || |||||||| |||||||||||||| ||||||||||
Sbjct 600 ACAAGAAGTCTCATGAGTT-CATGCTAAAGAAAATAAAAGTTCAAA 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5