BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477892
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05950.1 | Symbols: | RmlC-like cupins superfamily protein ... 1188 0.0
> AT3G05950.1 | Symbols: | RmlC-like cupins superfamily protein
| chr3:1781067-1782007 REVERSE LENGTH=796
Length=796
Score = 1188 bits (643), Expect = 0.0
Identities = 719/756 (95%), Gaps = 4/756 (1%)
Strand=Plus/Plus
Query 1 TCCTTACCACAAAGCTAGAGATATAAAGAAAAGAAATAATAAATGGAAGGCTTTCTTCGC 60
||||||||||||||||| || |||||||||| ||||| ||||||||||| |||||||||
Sbjct 4 TCCTTACCACAAAGCTA-AG-GATAAAGAAAATAAATAGTAAATGGAAGGGTTTCTTCGC 61
Query 61 TTCCTTGCAGCGAAAGCCATCTTGTTGGCTTTAGCATCTTCATTTGTATCTTGTTATGAC 120
|| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 62 TTTCTTGTAGCGAAAGCCATCTTATTGGCTTTAGCATCTTCATTTGTATCTTGTTACGAC 121
Query 121 CCAAGTCCTCTTCAAGACTTTTGTGTTGCCGTCGATGACGCTAATGGCGTTTTCGTGAAT 180
|||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 122 CCAAGTCCTCTTCAGGACTTTTGTGTTGCCGTCGATGACGCTAGTGGTGTTTTCGTGAAT 181
Query 181 GGAAAATTCTGCAAAGACCCAAAATACGTGAAAGCTGAAGACTTTTTTACTTCTGGACTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 182 GGAAAATTCTGCAAAGACCCAAAATACGTGAAAGCTGAAGACTTTTTTACTTCCGGACTA 241
Query 241 AACATTGCCGGAAACACTATAAACCGCGTTGGCTCCAACGTTACAAACGCTAACGTTGAC 300
||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 242 AACATCGCCGGAAACACAATAAACCGCGTTGGCTCCAACGTTACAAACGTTAACGTTGAC 301
Query 301 AAAATCCCTGGACTCAACACACTCGGTGTGTCTCTTGTCCGAATTGACTTTGCCCCGGGA 360
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 302 AAAATCCCTGGACTCAACACCCTCGGAGTGTCTCTTGTCCGAATTGACTTTGCCCCGGGA 361
Query 361 GGTCAAAACCCACCACACACGCACCCACGAGCCACCGAGATCCTCGTGGTTGTCGAAGGA 420
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 362 GGTCAAAACCCGCCACACACGCACCCACGAGCCACTGAGATCCTCGTGGTTGTCGAAGGA 421
Query 421 ACGCTCTTAGTCGGGTTTGTGACATCGAACCAAGACAACAACAGATTGTTCTCAAAGGTT 480
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 422 ACACTCTTAGTCGGTTTTGTAACATCGAACCAAGACAACAACAGATTGTTCTCAAAGGTT 481
Query 481 CTTTACCCGGGAGACGTATTT-GTGTTTCCCATAGGGATGATACATTTTCAAGTGAACGT 539
||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 482 CTTTACCCGGGAGACGT-TTTCGTGTTTCCCATAGGAATGATACATTTTCAAGTGAACGT 540
Query 540 TGGGAGGACGAACGCAGTTGCGTTTGCTGGTCTTGGTAGCCAAAATCCAGGTACGATAAC 599
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 541 TGGGAGGACGAACGCAGTTGCGTTTGCTGGTCTTGGTAGCCAAAATCCCGGTACAATCAC 600
Query 600 AATCGCAGACGCGGTTTTTGGATCGAAGCCTTTGATTACGCCGGAGATTTTAGCTAAAGC 659
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 601 AATCGCAGACGCCGTTTTTGGATCGAAGCCTTCGATTATGCCGGAGATTTTAGCAAAAGC 660
Query 660 GTTTCAGCTGGATGTGAACGTGGTTAGATATCTCGAGGCAAGGTTTTCTTCCAATTATGA 719
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 661 GTTTCAGCTGGATGTGAACGTGGTTAAATATCTCGAGGCAAGATTTTCTTCCAATTATGA 720
Query 720 TCGTCATTATTAACAAGTTAAGAGAATGACGGGAAA 755
||||||||||||||||||||||||||||| ||||||
Sbjct 721 TCGTCATTATTAACAAGTTAAGAGAATGAAGGGAAA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5