BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477894 Length=2323 Score E Sequences producing significant alignments: (Bits) Value AT3G05970.1 | Symbols: LACS6, ATLACS6 | long-chain acyl-CoA syn... 3770 0.0 > AT3G05970.1 | Symbols: LACS6, ATLACS6 | long-chain acyl-CoA synthetase 6 | chr3:1786318-1791802 REVERSE LENGTH=2354 Length=2354 Score = 3770 bits (2041), Expect = 0.0 Identities = 2253/2350 (96%), Gaps = 36/2350 (2%) Strand=Plus/Plus Query 4 TCTTTCGGATCATTCTCTTCTCTCTGATTCCGAATCGGTTAATTATTATTATGGA---TT 60 ||||||||||||||||| || ||||||||||||||||| ||| ||||||||||| || Sbjct 11 TCTTTCGGATCATTCTC-TC-CTCTGATTCCGAATCGGGTAA--ATTATTATGGATTCTT 66 Query 61 CTTC-T--TCTTCCTCCGCCGCCGCACGCCGCCGCATCAACGCTATCCACTCTCATCTCG 117 |||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 67 CTTCTTCGTCTTCCTCCGCCGCCGCACGCCGCCGTATCAACGCTATCCACTCTCACCTCG 126 Query 118 TCACCTCTTCTCGCTCTTCCCCTCTCCTCCGCTCCAATCCCACCGCCGGCGAGTTCTGTC 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TCACCTCTTCTCGCTCTTCCCCTCTCCTCCGCTCCAATCCCACCGCCGGCGAGTTCTGTC 186 Query 178 TTGATAATGGCTACAGTGTTGTTCTTCCCGAGAAATTGAATACTGGCAATTGGAACGTCT 237 ||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 187 TTGATAATGGCTATAGTGTTGTTCTTCCCGAGAAACTGAATACTGGCAGTTGGAACGTCT 246 Query 238 ACAGATCTGCAAAGTCTCCGTTCAAGCTCGTTAGCAGATTCCCAGATCATCCTGACATCG 297 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 247 ACAGATCTGCAAAATCTCCGTTCAAGCTCGTTAGCAGATTCCCAGATCATCCTGACATCG 306 Query 298 CTACTCTCCATGACAATTTTGAGCATGCTGTTCATGATTTTCGGGATTACAAGTATTTAG 357 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 307 CTACTCTCCATGACAATTTTGAGCATGCTGTTCATGATTTTCGAGATTACAAGTATTTAG 366 Query 358 GAACTCGTGTTCGTGTTGACGGAACTGTTGGAGACTACAAATGGATGACATATGGAGAAG 417 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 GAACTCGTGTTCGTGTCGACGGAACTGTTGGAGACTACAAATGGATGACATATGGAGAAG 426 Query 418 CTGGTACAGCAAGAACTGCTTTAGGTTCGGGTTTAGTTCATCACGGAATCCCCATGGGAT 477 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 427 CTGGTACAGCAAGAACTGCTTTAGGTTCTGGTTTGGTTCATCACGGAATCCCCATGGGAT 486 Query 478 CATCTGTTGGAATTTACTTTATCAACCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTT 537 | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 487 CTTCTGTTGGAATTTACTTCATCAATCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTT 546 Query 538 CTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGGCCCTGATGCTGTAAAAT 597 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 547 CTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGGTCCTGATGCTGTGAAAT 606 Query 598 TTATTGTCAATCATGCAACTGTCCAAGCCATATTTTGTGTGGCAGAGACTTTGAACTCTT 657 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 607 TTATTGTCAATCATGCAACTGTGCAAGCCATATTTTGTGTGGCAGAGACTTTAAACTCTT 666 Query 658 TACTTAGCTGTTTGTCTGAGATGCCAAGTGTACGCCTGGTAGTGGTTGTTGGAGGGTTGA 717 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 667 TACTTAGCTGTTTGTCTGAGATGCCAAGTGTACGCCTGGTGGTGGTTGTTGGAGGGTT-A 725 Query 718 A-TGAATCTTTACCCTCGCTTCCCTCATCAACAGGAGTGAAAGTTGTATCATATTCAGTG 776 | |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct 726 ATTGAATCTTTACCCTCGCTTCCCTCATCATCAGGAGTGAAAGTTGTATCCTATTCGGTG 785 Query 777 TTACTGAATCAGGGTCGTAGTAACCCTCAGCGATTTTTTCCACCAAAACCCGATGATGTT 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 786 TTACTGAATCAGGGTCGTAGTAACCCTCAGCGATTTTTTCCACCAAAACCCGATGATGTT 845 Query 837 GCAACCATATGCTATACAAGCGGAACAACTGGGACACCCAAGGGAGTCGTACTAACCCAT 896 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 846 GCAACCATATGCTATACAAGCGGAACAACTGGGACACCCAAGGGAGTCGTATTAACTCAT 905 Query 897 GCAAACTTGATTGCAAATGTTGCTGGCTCCAGCTTTAGTGTGAAATTTTTCTCTTCAGAT 956 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 906 GCAAACTTGATTGCCAATGTTGCTGGCTCCAGCTTTAGTGTGAAGTTTTTCTCTTCAGAT 965 Query 957 GTTTACATTTCGTATCTTCCA-TTGGCACACATTTACGAACGAGCTAATCAGATCCTAAC 1015 ||||||||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 966 GTTTACATTTCGTATCTTCCACTT-GCTCACATTTACGAACGAGCTAATCAGATCCTAAC 1024 Query 1016 GGTGTACTTTGGAGTTGCTGTTGGATTCTACCAAGGGGACAATATGAAACTACTGGATGA 1075 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 AGTGTACTTTGGAGTTGCTGTTGGATTCTACCAAGGGGACAATATGAAACTACTGGATGA 1084 Query 1076 TTTGGCTGCTCTGAGACCTACTGTATTCAGCAGTGTCCCTCGATTATACAATAGAATATA 1135 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1085 TTTGGCTGCTCTGAGACCTACTGTATTTAGCAGTGTCCCTCGATTATACAATAGAATATA 1144 Query 1136 TGCTGGTATCATTAATGCAGTAAAAACCTCTGGTGGGCTGAAAGAGAGACTCTTCAATGC 1195 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1145 TGCTGGTATCATTAATGCAGTAAAAACCTCTGGTGGTCTGAAAGAGAGACTCTTCAATGC 1204 Query 1196 TGCCTATAATGCAAAGAAACAGGCTCTCTTGAATGGAAAGAGTGCTTCTCCCATATGGGA 1255 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1205 TGCCTATAATGCAAAGAAGCAGGCTCTCTTGAATGGAAAGAGTGCTTCTCCCATATGGGA 1264 Query 1256 CAGGTTGGTATTTAATAAGATAAAGGACAGGCTTGGAGGGCGTGTTCGTTTTATGACGTC 1315 |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1265 CAGGTTGGTATTTAATAAAATAAAGGACAGACTTGGAGGGCGGGTTCGTTTTATGACGTC 1324 Query 1316 TGGTGCTTCACCTCTGTCTCCTGAAGTGATGGAATTTTTGAAAATATGCTTTGGAGGAAG 1375 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1325 TGGTGCTTCACCTCTCTCTCCTGAAGTGATGGAATTTTTGAAAGTATGCTTTGGAGGAAG 1384 Query 1376 GGTGACAGAGGGATATGGAATGACTGAAACATCTTGTGTTATAAGTGGAATGGACGAGGG 1435 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1385 GGTAACAGAGGGATATGGAATGACTGAAACATCTTGTGTTATAAGTGGAATGGACGAGGG 1444 Query 1436 TGATAACCTCACTGGACATGTTGGCTCTCCTAATCCAGCTTGTGAAGTAAAGCTTGTGGA 1495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1445 TGATAACCTCACTGGACATGTTGGCTCTCCTAATCCAGCTTGTGAAGTAAAGCTTGTGGA 1504 Query 1496 TGTCCCGGAAATGAACTATACATCAGTGGATCAGCCCCATCCCCGTGGCGAAATATGTGT 1555 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1505 TGTCCCAGAAATGAACTATACATCAGCGGATCAGCCCCATCCCCGTGGCGAAATATGTGT 1564 Query 1556 TAGGGGTCCTATCATTTTTAGAGGCTATTACAAAGATGAAGTTCAAACGAAAGAGGTGAT 1615 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 1565 TAGGGGTCCTATCATTTTTACAGGCTATTACAAAGATGAAATTCAAACGAAAGAGGTGAT 1624 Query 1616 TGATGAAGATGGATGGCTTCACACTGGAGATATAGGTCTATGGCTGCCGGGAGGACGTCT 1675 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1625 TGATGAAGATGGATGGCTTCACACTGGAGATATAGGTCTGTGGCTGCCGGGAGGACGTCT 1684 Query 1676 AAAAATTATTGACAGGAAGAAGAACATCTTCAAACTGGCGCAGGGCGAGTATATAGCTCC 1735 ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| Sbjct 1685 AAAAATTATTGACAGAAAGAAGAACATCTTCAAATTGGCGCAGGGGGAGTATATAGCTCC 1744 Query 1736 AGAGAAAATTGAAAACGTCTATGCTAAATGCAAATTTGTGGGCCAGTGCTTTATATATGG 1795 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1745 AGAGAAAATTGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATATGG 1804 Query 1796 TGATAGCTTTAATTCATCATTGGTAGCTGTTGTATCGGTTGATCCAGATGTGCTGAAAAG 1855 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1805 TGATAGCTTTAATTCATCATTGGTAGCTGTTGTATCGGTTGATCCAGATGTGCTGAAAAG 1864 Query 1856 CTGGGCTGCTTCAGAAGGCATTAAGGGAGGTGATCTGAGAGAATTGTGCAATAACCCGAG 1915 |||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 1865 CTGGGCAGCTTCAGAAGGCATTAAGGGAGGAGATCTGAGAGAATTGTGTAATAATCCGAG 1924 Query 1916 AGTGAAAGCAGCAGTACTATCTGACATGGACACTGTTGGAAGAGAAGCTCAGTTGAGAGG 1975 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1925 AGTGAAAGCAGCAGTACTATCTGACATGGACACTGTTGGAAGAGAAGCTCAGTTGAGAGG 1984 Query 1976 CTTTGAGTTTGCAAAGGCTGTGACATTGGTGCTGGAACCATTTACTCTGGAAAATGGCTT 2035 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1985 CTTCGAGTTTGCAAAGGCTGTGACATTGGTGCTGGAACCATTTACTCTGGAAAATGGCTT 2044 Query 2036 GTTGACTCCGACATTCAAGATAAAGAGACCACAAGCAAAGGAATATTTCGCAGAAGCAAT 2095 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2045 GTTGACTCCGACGTTCAAGATTAAGAGACCACAAGCAAAGGAATATTTCGCAGAAGCAAT 2104 Query 2096 AACAAACATGTACAAGGAGCTTGGTGCTTCTG--------G-TAA-AG-G-TTTGTGATG 2143 |||||||||||||||||||||||||||||||| | ||| || | ||||||||| Sbjct 2105 AACAAACATGTACAAGGAGCTTGGTGCTTCTGATCCCTCTGCTAATAGAGGTTTGTGATG 2164 Query 2144 ATGGTATAATCGTGTGATTAATAAAAAGCCTATTCAAAAGTTGTTTTTCCTACAAATTGT 2203 |||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| Sbjct 2165 ATGGTATAATCGTGTGATTAATAAAAAGCCTACGCAAAAGTTGTTTCTCCCACAAATTGT 2224 Query 2204 ATTCTTTTTTGTTTTCTTGCTACATATTTATTGAATAGTAAAGGTAATAAAGGTGCTACA 2263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2225 ATTCTTTTTTGTTTTCTTGCTACATATTTATTGAATAGTAAAGGTAATAAAGGTGCTACA 2284 Query 2264 TTA-AT----GAAACTCT-TT----TACAATGTTTTCCCTGTGTAATAAAAAGGCAAAAC 2313 ||| || |||||| | || ||||||||||||||| ||||||||||||||||||| Sbjct 2285 TTACATTAATGAAACTTTCTTACAGTACAATGTTTTCCCTCTGTAATAAAAAGGCAAAAC 2344 Query 2314 ATTCACAATT 2323 |||| ||||| Sbjct 2345 ATTCCCAATT 2354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115310651865 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5