BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477894
Length=2323
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05970.1 | Symbols: LACS6, ATLACS6 | long-chain acyl-CoA syn... 3770 0.0
> AT3G05970.1 | Symbols: LACS6, ATLACS6 | long-chain acyl-CoA synthetase
6 | chr3:1786318-1791802 REVERSE LENGTH=2354
Length=2354
Score = 3770 bits (2041), Expect = 0.0
Identities = 2253/2350 (96%), Gaps = 36/2350 (2%)
Strand=Plus/Plus
Query 4 TCTTTCGGATCATTCTCTTCTCTCTGATTCCGAATCGGTTAATTATTATTATGGA---TT 60
||||||||||||||||| || ||||||||||||||||| ||| ||||||||||| ||
Sbjct 11 TCTTTCGGATCATTCTC-TC-CTCTGATTCCGAATCGGGTAA--ATTATTATGGATTCTT 66
Query 61 CTTC-T--TCTTCCTCCGCCGCCGCACGCCGCCGCATCAACGCTATCCACTCTCATCTCG 117
|||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 67 CTTCTTCGTCTTCCTCCGCCGCCGCACGCCGCCGTATCAACGCTATCCACTCTCACCTCG 126
Query 118 TCACCTCTTCTCGCTCTTCCCCTCTCCTCCGCTCCAATCCCACCGCCGGCGAGTTCTGTC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCACCTCTTCTCGCTCTTCCCCTCTCCTCCGCTCCAATCCCACCGCCGGCGAGTTCTGTC 186
Query 178 TTGATAATGGCTACAGTGTTGTTCTTCCCGAGAAATTGAATACTGGCAATTGGAACGTCT 237
||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 187 TTGATAATGGCTATAGTGTTGTTCTTCCCGAGAAACTGAATACTGGCAGTTGGAACGTCT 246
Query 238 ACAGATCTGCAAAGTCTCCGTTCAAGCTCGTTAGCAGATTCCCAGATCATCCTGACATCG 297
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ACAGATCTGCAAAATCTCCGTTCAAGCTCGTTAGCAGATTCCCAGATCATCCTGACATCG 306
Query 298 CTACTCTCCATGACAATTTTGAGCATGCTGTTCATGATTTTCGGGATTACAAGTATTTAG 357
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 307 CTACTCTCCATGACAATTTTGAGCATGCTGTTCATGATTTTCGAGATTACAAGTATTTAG 366
Query 358 GAACTCGTGTTCGTGTTGACGGAACTGTTGGAGACTACAAATGGATGACATATGGAGAAG 417
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GAACTCGTGTTCGTGTCGACGGAACTGTTGGAGACTACAAATGGATGACATATGGAGAAG 426
Query 418 CTGGTACAGCAAGAACTGCTTTAGGTTCGGGTTTAGTTCATCACGGAATCCCCATGGGAT 477
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 427 CTGGTACAGCAAGAACTGCTTTAGGTTCTGGTTTGGTTCATCACGGAATCCCCATGGGAT 486
Query 478 CATCTGTTGGAATTTACTTTATCAACCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTT 537
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 487 CTTCTGTTGGAATTTACTTCATCAATCGCCCAGAGTGGCTCATTGTTGATCATGCTTGTT 546
Query 538 CTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGGCCCTGATGCTGTAAAAT 597
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 547 CTTCTTATTCTTATGTGTCTGTTCCTTTGTATGATACTCTTGGTCCTGATGCTGTGAAAT 606
Query 598 TTATTGTCAATCATGCAACTGTCCAAGCCATATTTTGTGTGGCAGAGACTTTGAACTCTT 657
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 607 TTATTGTCAATCATGCAACTGTGCAAGCCATATTTTGTGTGGCAGAGACTTTAAACTCTT 666
Query 658 TACTTAGCTGTTTGTCTGAGATGCCAAGTGTACGCCTGGTAGTGGTTGTTGGAGGGTTGA 717
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 667 TACTTAGCTGTTTGTCTGAGATGCCAAGTGTACGCCTGGTGGTGGTTGTTGGAGGGTT-A 725
Query 718 A-TGAATCTTTACCCTCGCTTCCCTCATCAACAGGAGTGAAAGTTGTATCATATTCAGTG 776
| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 726 ATTGAATCTTTACCCTCGCTTCCCTCATCATCAGGAGTGAAAGTTGTATCCTATTCGGTG 785
Query 777 TTACTGAATCAGGGTCGTAGTAACCCTCAGCGATTTTTTCCACCAAAACCCGATGATGTT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TTACTGAATCAGGGTCGTAGTAACCCTCAGCGATTTTTTCCACCAAAACCCGATGATGTT 845
Query 837 GCAACCATATGCTATACAAGCGGAACAACTGGGACACCCAAGGGAGTCGTACTAACCCAT 896
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 846 GCAACCATATGCTATACAAGCGGAACAACTGGGACACCCAAGGGAGTCGTATTAACTCAT 905
Query 897 GCAAACTTGATTGCAAATGTTGCTGGCTCCAGCTTTAGTGTGAAATTTTTCTCTTCAGAT 956
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 906 GCAAACTTGATTGCCAATGTTGCTGGCTCCAGCTTTAGTGTGAAGTTTTTCTCTTCAGAT 965
Query 957 GTTTACATTTCGTATCTTCCA-TTGGCACACATTTACGAACGAGCTAATCAGATCCTAAC 1015
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 966 GTTTACATTTCGTATCTTCCACTT-GCTCACATTTACGAACGAGCTAATCAGATCCTAAC 1024
Query 1016 GGTGTACTTTGGAGTTGCTGTTGGATTCTACCAAGGGGACAATATGAAACTACTGGATGA 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 AGTGTACTTTGGAGTTGCTGTTGGATTCTACCAAGGGGACAATATGAAACTACTGGATGA 1084
Query 1076 TTTGGCTGCTCTGAGACCTACTGTATTCAGCAGTGTCCCTCGATTATACAATAGAATATA 1135
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1085 TTTGGCTGCTCTGAGACCTACTGTATTTAGCAGTGTCCCTCGATTATACAATAGAATATA 1144
Query 1136 TGCTGGTATCATTAATGCAGTAAAAACCTCTGGTGGGCTGAAAGAGAGACTCTTCAATGC 1195
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1145 TGCTGGTATCATTAATGCAGTAAAAACCTCTGGTGGTCTGAAAGAGAGACTCTTCAATGC 1204
Query 1196 TGCCTATAATGCAAAGAAACAGGCTCTCTTGAATGGAAAGAGTGCTTCTCCCATATGGGA 1255
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 TGCCTATAATGCAAAGAAGCAGGCTCTCTTGAATGGAAAGAGTGCTTCTCCCATATGGGA 1264
Query 1256 CAGGTTGGTATTTAATAAGATAAAGGACAGGCTTGGAGGGCGTGTTCGTTTTATGACGTC 1315
|||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1265 CAGGTTGGTATTTAATAAAATAAAGGACAGACTTGGAGGGCGGGTTCGTTTTATGACGTC 1324
Query 1316 TGGTGCTTCACCTCTGTCTCCTGAAGTGATGGAATTTTTGAAAATATGCTTTGGAGGAAG 1375
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1325 TGGTGCTTCACCTCTCTCTCCTGAAGTGATGGAATTTTTGAAAGTATGCTTTGGAGGAAG 1384
Query 1376 GGTGACAGAGGGATATGGAATGACTGAAACATCTTGTGTTATAAGTGGAATGGACGAGGG 1435
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GGTAACAGAGGGATATGGAATGACTGAAACATCTTGTGTTATAAGTGGAATGGACGAGGG 1444
Query 1436 TGATAACCTCACTGGACATGTTGGCTCTCCTAATCCAGCTTGTGAAGTAAAGCTTGTGGA 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TGATAACCTCACTGGACATGTTGGCTCTCCTAATCCAGCTTGTGAAGTAAAGCTTGTGGA 1504
Query 1496 TGTCCCGGAAATGAACTATACATCAGTGGATCAGCCCCATCCCCGTGGCGAAATATGTGT 1555
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1505 TGTCCCAGAAATGAACTATACATCAGCGGATCAGCCCCATCCCCGTGGCGAAATATGTGT 1564
Query 1556 TAGGGGTCCTATCATTTTTAGAGGCTATTACAAAGATGAAGTTCAAACGAAAGAGGTGAT 1615
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1565 TAGGGGTCCTATCATTTTTACAGGCTATTACAAAGATGAAATTCAAACGAAAGAGGTGAT 1624
Query 1616 TGATGAAGATGGATGGCTTCACACTGGAGATATAGGTCTATGGCTGCCGGGAGGACGTCT 1675
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1625 TGATGAAGATGGATGGCTTCACACTGGAGATATAGGTCTGTGGCTGCCGGGAGGACGTCT 1684
Query 1676 AAAAATTATTGACAGGAAGAAGAACATCTTCAAACTGGCGCAGGGCGAGTATATAGCTCC 1735
||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1685 AAAAATTATTGACAGAAAGAAGAACATCTTCAAATTGGCGCAGGGGGAGTATATAGCTCC 1744
Query 1736 AGAGAAAATTGAAAACGTCTATGCTAAATGCAAATTTGTGGGCCAGTGCTTTATATATGG 1795
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1745 AGAGAAAATTGAAAACGTCTATGCCAAATGCAAATTTGTGGGCCAGTGCTTCATATATGG 1804
Query 1796 TGATAGCTTTAATTCATCATTGGTAGCTGTTGTATCGGTTGATCCAGATGTGCTGAAAAG 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 TGATAGCTTTAATTCATCATTGGTAGCTGTTGTATCGGTTGATCCAGATGTGCTGAAAAG 1864
Query 1856 CTGGGCTGCTTCAGAAGGCATTAAGGGAGGTGATCTGAGAGAATTGTGCAATAACCCGAG 1915
|||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1865 CTGGGCAGCTTCAGAAGGCATTAAGGGAGGAGATCTGAGAGAATTGTGTAATAATCCGAG 1924
Query 1916 AGTGAAAGCAGCAGTACTATCTGACATGGACACTGTTGGAAGAGAAGCTCAGTTGAGAGG 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGTGAAAGCAGCAGTACTATCTGACATGGACACTGTTGGAAGAGAAGCTCAGTTGAGAGG 1984
Query 1976 CTTTGAGTTTGCAAAGGCTGTGACATTGGTGCTGGAACCATTTACTCTGGAAAATGGCTT 2035
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1985 CTTCGAGTTTGCAAAGGCTGTGACATTGGTGCTGGAACCATTTACTCTGGAAAATGGCTT 2044
Query 2036 GTTGACTCCGACATTCAAGATAAAGAGACCACAAGCAAAGGAATATTTCGCAGAAGCAAT 2095
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2045 GTTGACTCCGACGTTCAAGATTAAGAGACCACAAGCAAAGGAATATTTCGCAGAAGCAAT 2104
Query 2096 AACAAACATGTACAAGGAGCTTGGTGCTTCTG--------G-TAA-AG-G-TTTGTGATG 2143
|||||||||||||||||||||||||||||||| | ||| || | |||||||||
Sbjct 2105 AACAAACATGTACAAGGAGCTTGGTGCTTCTGATCCCTCTGCTAATAGAGGTTTGTGATG 2164
Query 2144 ATGGTATAATCGTGTGATTAATAAAAAGCCTATTCAAAAGTTGTTTTTCCTACAAATTGT 2203
|||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct 2165 ATGGTATAATCGTGTGATTAATAAAAAGCCTACGCAAAAGTTGTTTCTCCCACAAATTGT 2224
Query 2204 ATTCTTTTTTGTTTTCTTGCTACATATTTATTGAATAGTAAAGGTAATAAAGGTGCTACA 2263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2225 ATTCTTTTTTGTTTTCTTGCTACATATTTATTGAATAGTAAAGGTAATAAAGGTGCTACA 2284
Query 2264 TTA-AT----GAAACTCT-TT----TACAATGTTTTCCCTGTGTAATAAAAAGGCAAAAC 2313
||| || |||||| | || ||||||||||||||| |||||||||||||||||||
Sbjct 2285 TTACATTAATGAAACTTTCTTACAGTACAATGTTTTCCCTCTGTAATAAAAAGGCAAAAC 2344
Query 2314 ATTCACAATT 2323
|||| |||||
Sbjct 2345 ATTCCCAATT 2354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115310651865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5