BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477898
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06000.1 | Symbols: | RNI-like superfamily protein | chr3:1... 872 0.0
> AT3G06000.1 | Symbols: | RNI-like superfamily protein | chr3:1801446-1802081
FORWARD LENGTH=636
Length=636
Score = 872 bits (472), Expect = 0.0
Identities = 592/648 (91%), Gaps = 15/648 (2%)
Strand=Plus/Plus
Query 1 ATGGTAGAGACTAGCTTGACCAATGAGGATACTATAGAGGAGAATGCAATT-GAGACTTG 59
||||| || |||||||| ||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 1 ATGGTGGACACTAGCTTAACCAATGAGGATACTATAGAGGAGACTGC-ATTCGAGACTTG 59
Query 60 TACTCATATAAAAGTTGGAGTTTCTATGAGCAAAGCAGTTTCAAGCTTTAATTTCTTGAC 119
|||||||||||||||||||||||||||||||||| || |||||||||| | |||||||||
Sbjct 60 TACTCATATAAAAGTTGGAGTTTCTATGAGCAAACCATTTTCAAGCTTCAGTTTCTTGAC 119
Query 120 TGTAATTACCCTAAGTTATACCAATCTAGAGAATGGAGGTGCTATAGCTTTAGTAAACGC 179
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 120 TGTAATTAATCTAAGTTATACAAATCTAGAGAATGGAGGTGCTATAGCTTTAGTAAACGC 179
Query 180 TCTCAAGAACTCTGTTCCATCTCTTCAAGTTATAGAAATGGCTGGAAATAACATAACTTA 239
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTCAAGAACTCCGCTCCATCTCTTCAAGTTATAGAAATGGCTGGAAATAACATAACTTA 239
Query 240 TGAGGCGGCTCCAGCTATCGCAGtttttttGGCAGCAAAGCGACATCTGAAAAAGTTGAA 299
|||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 240 TGAGGCGGCTACAGCTATCGCAGTTTGTTTGGCAGCAAAGAGACATCTGAAAAAGTTGAA 299
Query 300 CTTGTCAGAGAATAATCTAAAAGATGAGGGATGTCTTGAGATTGTAAAGAGTATGGATGG 359
||||| || ||| |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 300 TTTGTCTGAAAATGATCTAAAAGATGAGGGATGTGTTGAGATTGTAAAGAGTATGGAAGA 359
Query 360 TTTGGAGTTAGAATATGTTGATATGAGCTTCAATGACTTGAGAAGAGAAGGAGCATTGGG 419
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 360 TTGGGAGTTAGAATATGTTGATATGAGCTACAATGACTTGAGAAGAGAAGGAGCATTGCG 419
Query 420 CTTGGCTCGTGTTGTTATCAAGAAAGAAAGTTTTAAGATGTTGAACATTGATGGGAATAT 479
|||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||
Sbjct 420 CTTGGCTCGTGTTGTTGTCAAGAAAGGAAGTTTCAAGATGTTGAACATTGATGGAAATAT 479
Query 480 GATCTCTGTTAAAGGCATTGAGGAAATCAAAGAGATATTCAAGAATTGTTCTAAGTTACT 539
||||||| |||||||||||||||||||||||| |||||||| ||||||| | ||||||||
Sbjct 480 GATCTCTCTTAAAGGCATTGAGGAAATCAAAGTGATATTCACGAATTGTCCAAAGTTACT 539
Query 540 TGGACCTTTGGATAAGAATG-ACCCTCTTG-GAGAGGATGATGATGATTTAAGAGAGAAT 597
|||||||||||||||||| | | | || | || ||||||||||||||||||||||||
Sbjct 540 TGGACCTTTGGATAAGAACGTATA-TAATGTG-GATGATGATGATGATTTAAGAGAGAAT 597
Query 598 CTTGAAGATTTTGAAGATGAATTTGTGAGTGTATTTATCTTTTATTAG 645
|| | ||||||||||||||||||||||||||||||||||||
Sbjct 598 ---GA---T---GAAGATGAATTTGTGAGTGTATTTATCTTTTATTAG 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5