BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477902
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06035.1 | Symbols: | Glycoprotein membrane precursor GPI-a... 1129 0.0
> AT3G06035.1 | Symbols: | Glycoprotein membrane precursor GPI-anchored
| chr3:1823099-1824216 REVERSE LENGTH=782
Length=782
Score = 1129 bits (611), Expect = 0.0
Identities = 731/788 (93%), Gaps = 12/788 (2%)
Strand=Plus/Plus
Query 1 CTTTAAGAGTAAAAGCTAAGTAACCATTTCTCTCACTCTCCTTTATCAACAAATATAAGC 60
||||| |||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1 CTTTATGAGTAAAAGCGAAGTAACCATTTCTCTCACTCTCCTTTCTCAATTAATATAAGC 60
Query 61 CAATCACCaaaaaaaaTATCATTTGAGAACTCTAGAAACCTGTTTCAATGGCGATTC-AC 119
|||||||| | |||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 61 CAATCACC-ATCAAAATATCATTTGAGAACTCTAGAAACCTGCTTCAATGGCGA-TCGAC 118
Query 120 AAGCTTCCACTTCTTCTCTTTCTCTCCATCCTCCTCTTCCTCAATCGCCCCGTTCTTAGC 179
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 119 AAGCTTCCACTTCTTCTCTTTCTCTCCATACTCCTCTGCCTCAATCGCCCTGTTCTTAGC 178
Query 180 TACACCGATGAAGAGGCCATTCTTCTCACAGGAATCAACAGCTACAGAACAACACAGAAT 239
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GACACCGATGAAGAGGACATTCTTCTCACAGGAATCAACAGCTACAGAACAACACAGAAT 238
Query 240 CTAACAACCTTAAGCAAGAACGAAAACGCAGAATGTCTAGCTGACGAAATCGCAGACCAA 299
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 CTAACAATCTTAAGCAAGAACGAAAACGCAGAATGCCTAGCTGACGAAATCGCAGACCAA 298
Query 300 TTCAAGAACAAACCTTGCACTAGCGACACTGGTTCAGCCACAGTTCCTGGAACCGAGCCA 359
||||||||||||||||| || | ||||||||| ||||||||||| |||||||| ||||||
Sbjct 299 TTCAAGAACAAACCTTGTACCAACGACACTGGCTCAGCCACAGTACCTGGAACTGAGCCA 358
Query 360 CAGTTCGCAAACTACCCTCAGATTCTAGCCAAATGCCACTTAAACGTCTCTGACACTAGA 419
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct 359 CAGTTCGCAAACTACCCTCAGATTCTAGCAAAATGCCACTTGAACGTCTCAGACACGAGA 418
Query 420 GACGGCTGGATTATGCCTGCATGTGTTCCTCGTTTAGAATCAAGCCTCGTCCTCACAAAG 479
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 419 GACGGCTCGATTATGCCTGCATGTGTTCCTCGTTTAGAATCAAACCTCGTCCTCACAAAC 478
Query 480 TTCACCAAGTCGCAGTACTCAATGAGTTTGAACGATTCAAAGTTTACAGGGATTGGTATT 539
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 TTCACCAAGTCACAATACTCAATGAGTTTGAACGATTCCAAGTTTACAGGGATTGGTATT 538
Query 540 GGTAAAGAAGATGATTGGATCGTTGTGGTTCTCACTACCAACACACCAGAAGGAAGCTAT 599
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 539 GGTAAAGAAGATGATTGGATCGTTGTAGTCCTCACTACCAACACACCAGAAGGAAGCTAT 598
Query 600 TCTACAGCTACACCTACAAAACAGGATTCCAATGGTTTCACCTTTAGTGTTGGTCTCGTT 659
||||||||||| ||||||||||| || || ||||| ||||||||| || |||||||||||
Sbjct 599 TCTACAGCTACTCCTACAAAACAAGAGTCTAATGGCTTCACCTTTGGTATTGGTCTCGTT 658
Query 660 AGTTATTT-GATCATTTTCATGT--T-TTCCTTTTGTTTCTTCCTCTTTTGAGATGTCAA 715
|||||||| | |||||||||||| | ||||||||||||||| |||||||||||| ||||
Sbjct 659 AGTTATTTAG-TCATTTTCATGTACTCTTCCTTTTGTTTCTTTCTCTTTTGAGATATCAA 717
Query 716 ATGTTTTCATGAGTTTGTCTCAAAACTCTCTTTCCTTTAGACTATCAAGAATAAATTTTG 775
||||||| ||||||| || ||| | |||||||||||||||||||||||||||||||||
Sbjct 718 ATGTTTTGATGAGTTA-TC--AAA-CACTCTTTCCTTTAGACTATCAAGAATAAATTTTG 773
Query 776 TTAAAGAT 783
||||||||
Sbjct 774 TTAAAGAT 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5