BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477903
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06040.1 | Symbols: | Ribosomal protein L12/ ATP-dependent ... 1107 0.0
> AT3G06040.1 | Symbols: | Ribosomal protein L12/ ATP-dependent
Clp protease adaptor protein ClpS family protein | chr3:1824376-1825663
REVERSE LENGTH=864
Length=864
Score = 1107 bits (599), Expect = 0.0
Identities = 700/747 (94%), Gaps = 14/747 (2%)
Strand=Plus/Plus
Query 248 ACATGAAATGATCTTGGGTTGATGTTTGTGTATGGTAACAGAGGAAT-TTAGTCATGAAG 306
|||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||||
Sbjct 112 ACATGAAATGATCTTGGGTTGATG-TT-TGTATGGTAGCAGAGGAATAGTAGTCATGAAG 169
Query 307 CTTATTTCACTTGTCAGAAACGTTCGTGCTCGCCAATGTCAACCGGAAGTTATCTGGTCT 366
|||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 170 CTTATTTCACTTGTTAGAAACGTTCGTTCTCGCCAATGTCAACCGGAAGTAATCTGGTCT 229
Query 367 GTGCAAGTTCGTTTCTTGCAGCAAGATTCTGTCTCGAAAGCTAGACCCAAGAAATACAAA 426
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 230 GTGCAAGTTCGTTTCTTGCAGCAAGACTCTGTCTCGAAAGCTAAACCCAAGAAATACAAA 289
Query 427 TACCCGTCAGTTTATGATCCCTATGGTCCTAGACCCCAGCCTTCAAACAAAATCATGGAG 486
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 290 TACCCGTCAGTTTATGATCCGTATGGTCCTAGACCCCAGCCTTCAAGCAAAATCATGGAG 349
Query 487 TTAGCTGAGCGTATAGCTGCATTATCTCCAGAAGAACGGAAACAGATTGGTCCTGCACTC 546
||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 350 CTAGCTGAGCGTATAGCTGCTTTATCTCCAGAAGAAAGAAAACAGATTGGTCCTGCACTC 409
Query 547 AATGAACACCTGAGGCTTCCAAAACAACAGATGCTTTCATCGGATGGCATTGGTGCAAAA 606
||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 410 AATGAACACCTGAGGCTTCCAAAACAACAGATGATTTCATCGGACGGCATTGGAGCAAAA 469
Query 607 CAAGATACTGGAGCTGGGAAAGTTGAGGAGAAGAAGGAGAAGACGGCTTTCGATGTGAAG 666
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 470 CAAGATACCGGAGCTGGGAATGTAGAGGAGAAGAAGGAGAAGACGGCTTTCGATGTGAAG 529
Query 667 TTGGAGAAGTTTAATGCATCCGATAAGATCAAAGTGATTAAAGAAGTGAGAACGTTCACG 726
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 530 TTGGAGAAGTTTAATGCATCTGATAAGATCAAAGTGATAAAAGAAGTGAGAACGTTCACA 589
Query 727 AGTTTGGGTCTGAAGGAGGCGAAAGAGCTTGTGGAGAAAGTCCCGGCTATTCTTAAACAA 786
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 AGTTTGGGTCTGAAGGAAGCGAAAGAGCTTGTGGAGAAAGTCCCGGCTATTCTTAAACAA 649
Query 787 GGTGTGACAAAGGAAGAAGCTAATGAAATCATAGCAAAGATCAAAGCTGTAGGTGGAGTC 846
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 650 GGTGTGACAAAGGAAGAAGCTAATGAAATCATAGCCAAGATCAAAGCTGTTGGTGGAATC 709
Query 847 GCAGTTATGGAGTAAGTGACTTTTTGACACTT-GAATTGTTTTTC-GTTTGATTTGGT-T 903
|||||||||||||| ||||||||| ||||||| || |||||||| |||||||| | |
Sbjct 710 GCAGTTATGGAGTAGGTGACTTTT-GACACTTCGA-TTGTTTTTTTGTTTGATTCACTAT 767
Query 904 TGTGGTATTGTGATCACATCTTGGTACTTACAG-TAGATGTTTTGTAATAACAAATCAAT 962
| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 768 T-TGGTATTGTGATCACATCTTGGTACTTA-AGGTAGATGTTTTGTAATAACAAATCGAT 825
Query 963 TAGT---CATTGAGTTTTCAAGAACTT 986
|| | ||||||||||||||||||||
Sbjct 826 TACTTGACATTGAGTTTTCAAGAACTT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48275015267
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5