BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477906
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06050.1 | Symbols: PRXIIF, ATPRXIIF | peroxiredoxin IIF | c... 1243 0.0
> AT3G06050.1 | Symbols: PRXIIF, ATPRXIIF | peroxiredoxin IIF |
chr3:1826073-1827861 REVERSE LENGTH=896
Length=896
Score = 1243 bits (673), Expect = 0.0
Identities = 780/831 (94%), Gaps = 9/831 (1%)
Strand=Plus/Plus
Query 1 GTCTCGATCTCATTTTCAGCGATGGCGATGTCAATTCTAAAGCTAAGAAATTTATCGGCT 60
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 32 GTCTCAATCTTATTTTCAGCGATGGCGATGTCAATTCTAAAGCTAAGAAATTTATCGGCA 91
Query 61 TTAAGGTCGGCCGCAAATAGTGCCCGGATCGGAGTTTCCTCGAGGGGTTTCTCAAAGCTT 120
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 92 CTAAGATCGGCGGCAAATAGTGCCCGGATCGGAGTTTCATCGAGGGGTTTCTCAAAGCTC 151
Query 121 GCGGAGGGCGCTGACATAACCTCGGCGGCTCCCGGCGTTTCTCTCCAGAAAGCTCGCAGC 180
||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 152 GCGGAAGGCACTGACATAACCTCGGCGGCGCCTGGCGTTTCTCTCCAGAAAGCTCGCAGC 211
Query 181 TGGGACGAAGGCGTTTCCTCCAAATTCTCCACCACACCATTGTCAGATATCTTCAAGGGG 240
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 212 TGGGACGAAGGTGTTTCCTCCAAATTCTCCACCACGCCATTGTCAGATATCTTCAAGGGG 271
Query 241 AAGAAAGTCGTCATCTTTGGACTCCCTGGGGCTTACACGGGAGTTTGTTCGCAGCAGCAT 300
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 272 AAGAAAGTCGTCATCTTTGGTCTTCCTGGGGCTTACACGGGAGTTTGTTCACAGCAGCAT 331
Query 301 GTGCCTAGCTACAAGAGCCACATTGATAAGTTTAAGGCTAAAGGCATTGATTCTGTCGTA 360
||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 332 GTGCCTAGCTACAAGAGCCACATTGATAAGTTTAAAGCCAAAGGCATTGATTCTGTCATC 391
Query 361 TGTGTCTCTGTTAATGATCCCTATGCTATCAATGGTTGGGCTGAGAAGCTTGGTGCCAAA 420
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 392 TGTGTCTCTGTTAATGATCCCTTTGCTATCAATGGTTGGGCAGAGAAGCTTGGTGCCAAA 451
Query 421 GATGCAATTGAGTTTTATGGGGATTTTGATGGGAAATTCCACAAAAGCTTGGGGCTAGAC 480
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 452 GATGCAATTGAGTTTTATGGAGATTTTGATGGGAAATTTCACAAAAGCTTGGGGCTAGAC 511
Query 481 AAGGATCTCTCTGCTGCATTACTCGGGCCACGGTCTGAGAGATGGTCGGCTTATGTAGAA 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 512 AAGGATCTCTCTGCTGCATTGCTCGGGCCACGGTCTGAGAGATGGTCGGCTTATGTAGAA 571
Query 541 GACGGTAAGGTTAAGGCGGTGAATGTGGAAGAAGCACCGTCTGACTTCAAGGTTACAGGG 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 GACGGGAAGGTTAAGGCGGTGAATGTGGAAGAAGCACCGTCTGACTTCAAGGTTACAGGG 631
Query 601 GCAGAAGTCATCTTAGGACAGATCTAAAAGGGGTTTTTTCCAGAGTTGTTGTTTCTTCTG 660
||||||||||||||||||||||||||||| | | ||| ||||||||| |||||||||||
Sbjct 632 GCAGAAGTCATCTTAGGACAGATCTAAAAAG--TATTT-CCAGAGTTGCTGTTTCTTCTG 688
Query 661 ACTTGCAACTGAAAATAAGTTTGATCCGAACATGT-TCCAAGGATCACACCAAGAAACAG 719
| |||||||||| |||||||||||||||||||||| || |||||||| |||||| |||||
Sbjct 689 AGTTGCAACTGATAATAAGTTTGATCCGAACATGTCTC-AAGGATCAGACCAAGTAACAG 747
Query 720 CTTCACTTGTTTTTGTTTTGTTTCCACAGTTTCTGTTTCAATAAAAATTATGTGTTTTGC 779
|||||||| |||| ||||||||||||||||||| |||| ||||||| |||||||| ||||
Sbjct 748 CTTCACTTCTTTT-GTTTTGTTTCCACAGTTTCAGTTTAAATAAAACTTATGTGTCTTGC 806
Query 780 CGTTTCTCACCAAAATGTAAATC-GAT-CATAATATAAATTAGAAACCAAT 828
|||||||||||||| |||||||| | | |||||||| ||| ||||||||||
Sbjct 807 CGTTTCTCACCAAA-TGTAAATCTGGTTCATAATATGAATAAGAAACCAAT 856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5