BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477911
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06100.1 | Symbols: NLM6, NLM8, NIP7;1 | NOD26-like intrinsi... 1557 0.0
> AT3G06100.1 | Symbols: NLM6, NLM8, NIP7;1 | NOD26-like intrinsic
protein 7;1 | chr3:1841171-1843093 REVERSE LENGTH=1204
Length=1204
Score = 1557 bits (843), Expect = 0.0
Identities = 1052/1148 (92%), Gaps = 34/1148 (3%)
Strand=Plus/Plus
Query 1 TTTCCATCTTCTTTGCGTTTTTCTCTCTATCTCTCTTTTTAATTTTGCTCCATTAGGTCA 60
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||
Sbjct 27 TTTCCATCTTCTTTGCGTTTTTCTCTCTATCTCTC--TTT--TTTTGTTCCATTAGATCA 82
Query 61 TTCATAAAGCCGATCAAGCCTCCTTGATTGTGACTGTCCT-AGCTTCTTGATCACTATAT 119
|||||||||| ||||||||| |||||||||||||| |||| || ||||||||||||||||
Sbjct 83 TTCATAAAGCGGATCAAGCCACCTTGATTGTGACTTTCCTCAG-TTCTTGATCACTATAT 141
Query 120 CTTGAGGGATATTAAGAAGATGAATGGTGAGGCACGGTCAAGAGTAGTTGACCAAGAAGC 179
||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 142 CTTGAAGGA-ATTAAGAAGATGAATGGTGAGGCACGGTCAAGAGTAGTCGACCAAGAAGC 200
Query 180 TGGCTCAACTCCGTCTACTTTGAGAGATGAAGATCATCCTTCGAGACAAAGGCTTTTCGG 239
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 201 TGGCTCAACTCCATCTACTTTGAGAGATGAAGATCATCCCTCGAGACAAAGGCTTTTCGG 260
Query 240 ATGTCTCCCTTATGATATAGATCTCAATCCCATACGCATTGTAATGGCGGAATTTGTGGG 299
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 261 ATGTCTCCCTTATGATATAGATCTCAATCCCCTACGCATTGTAATGGCGGAATTGGTGGG 320
Query 300 GACATTCATTCTAATGTTCAGTGTGTGTGGGGTCATAAGCAGTACTCAATTATCTGGTGG 359
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 321 GACATTCATTCTAATGTTCAGTGTGTGTGGGGTCATAAGCAGTACCCAATTATCCGGCGG 380
Query 360 CCATGTCGGATTGCTAGAATACGCCGCCACCGCTGGATTATCGGTGGTGGTTGTAGTTTA 419
||| || ||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 381 CCACGTGGGATTGCTAGAGTACGCCGTCACCGCTGGATTATCTGTGGTGGTCGTAGTTTA 440
Query 420 CTCTATCGGACACATCTCCGGCGCCCATCTTAACCCATCGATCACCATCGCTTTCGCTGT 479
||| |||||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 441 CTCCATCGGACACATCTCTGGCGCCCATCTTAACCCTTCCATCACCATTGCTTTCGCTGT 500
Query 480 CTTTGGCGGATTCCCGTGGTCTCAGGTTCCGTTATATATAACAGCGCAAACGTTGGGGGC 539
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 501 CTTTGGCGGATTCCCGTGGTCTCAGGTTCCGTTGTATATAACGGCGCAAACATTGGGGGC 560
Query 540 AACGGCGGCAACATTAGTTGGGGTGTCAGTCTACGGAGTAAACGCTGACATTATGGCAAC 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 561 AACGGCGGCAACATTAGTTGGGGTGTCAGTGTACGGAGTAAACGCTGACATTATGGCAAC 620
Query 600 AAAACCTGCGTTAAGCTGCGTTTCTGCATTTTTCGTTGAACTCATAGCTACGAGCATCGT 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AAAACCTGCTTTAAGCTGCGTTTCTGCATTTTTCGTTGAACTCATAGCTACGAGCATCGT 680
Query 660 CGTGTTTCTCGCCTCCGCGTTGCATTGTGGTCCTCATCAAAATTTGGGTAATTTGACGGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 CGTGTTTCTCGCCTCCGCGTTGCATTGTGGTCCTCATCAAAATTTGGGTAATTTGACGGG 740
Query 720 GTTCGTGATTGGAACAGTCATTTCCCTCGGAGTGCTTATTACCGGACCGATTTCAGGAGG 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 741 GTTCGTGATTGGAACAGTCATTTCCCTTGGAGTGCTTATTACCGGACCGATTTCAGGAGG 800
Query 780 ATCGATGAACCCAGCTCGATCACTAGGACCAGCGGTGGTGGCATGGGATTTTGAGGACTT 839
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 801 ATCGATGAACCCAGCTCGATCACTTGGACCGGCGGTGGTGGCATGGGATTTTGAAGACTT 860
Query 840 ATGGATTTACATGACGGCTCCGGTGATCGGAGCTATCATCGGGGTTTTGACATACAGATC 899
||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 861 ATGGATTTACATGACAGCTCCGGTGATCGGAGCCATAATCGGAGTTTTGACATACAGATC 920
Query 900 AATTAGCCTCAAAACCAGGCCTTGCCTTTCTCCACTTTCCCCTTCCGTTTCTTCACTTTT 959
||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 921 AATTAGCCTAAAAACCAGGCCTTGCCCTTCTCCAGTTTCCCCTTCCGTTTCTTCACTTTT 980
Query 960 ACG-----C--T--AAA---T--T--CTA-----CAAATAAACACtttttattttttttc 998
||| | | ||| | | ||| ||||||||||||||| ||||||||||
Sbjct 981 ACGTTAATCACTTCAAAACCTAATATCTATTATACAAATAAACACTTTTGATTTTTTTTC 1040
Query 999 ttttttatggttttaaaatttttGTCATTACGTCATAAGA-GCCCTTGATGTGAAAACAG 1057
|| ||| |||||| || |||||||||||||||||| ||| ||| | |||| ||||||||
Sbjct 1041 TTGGTTAAGGTTTTTAAGTTTTTGTCATTACGTCATTAGATGCCGT-GATGCGAAAACAG 1099
Query 1058 AAATCTTCTTTTCGG-TGCCGACCaaaaaaaGG-TAAAGCAAATGAAAACAGAGAGCATT 1115
| | || ||| |||| | || | | | ||| |||||||||||||||||| | |||||
Sbjct 1100 AGAGCTACTTATCGGATT--GAAGATATAGAGGGTAAAGCAAATGAAAACAGGGGGCATT 1157
Query 1116 TTGTTCTT 1123
||||||||
Sbjct 1158 TTGTTCTT 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55069997865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5