BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477912
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06110.2 | Symbols: MKP2, DSPTP1B | MAPK phosphatase 2 | chr... 915 0.0
> AT3G06110.2 | Symbols: MKP2, DSPTP1B | MAPK phosphatase 2 | chr3:1843479-1844776
FORWARD LENGTH=741
Length=741
Score = 915 bits (495), Expect = 0.0
Identities = 564/597 (94%), Gaps = 5/597 (1%)
Strand=Plus/Plus
Query 2 ACAAGTGGAATTTTG-aaaaa-aaGCAGAGA--GATGGAGAAAGTGGTTGATCTCTTCGG 57
||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 5 ACAAGTGGAATTTTGAAAAAAGAAGCAGAGAGCGATGGAGAAAGTGGTTGATCTCTTCGG 64
Query 58 AGTCGGAGAAGCTAATTCCCAGAAGCTACTCAAAGGAGGCAAAGATCTCAGCGAGATCCA 117
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 65 AGTCGGAGAAGCTAATTCCCAGAAGCTACTCGAAGGAGGCAAAGATCTCAGCGAGATCCA 124
Query 118 ACAGGGATTGTTCATAGGATCAGTAGCTGAAGCGACTAACAAAGATTTGCTCAAAAGCTC 177
||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||
Sbjct 125 ACAGGGATTGTTCATAGGATCAGTAGCTGAAGCGAATAACAAGGATTTTCTCAAAAGCTC 184
Query 178 CAACATCACTCATATCTTAACCGTAGCTGTGGCCCTGGCTCCTCCTTATGCTGATGATTT 237
|| ||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 185 TAATATCACTCATGTCTTAACCGTTGCTGTGGCCTTGGCTCCTCCTTATCCTGATGATTT 244
Query 238 TGTTTATAAAGTCATCGAAGTTGTTGATAGAGACGAGACCGATTTGACAGTATATTTCGA 297
||| || |||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 245 TGTCTACAAAGTCATTGAAGTGGTTGATAGATCCGAGACCGATTTGACAGTATATTTCGA 304
Query 298 TGAGTGTTTTAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTG 357
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TGAGTGTTATAGCTTCATCGACCAAGCTATTCAATCTGGTGGTGGTGTTTTGGTTCATTG 364
Query 358 CTTCATGGGAATGTCTAGGAGTGTGACTATAGTGGTGGCTTATCTGATGAAAAAGCATGG 417
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 365 CTTCATGGGAATGTCTAGGAGTGTGACTATAGTGGTGGCTTACCTGATGAAAAAGCATGG 424
Query 418 ATTGGGATTCTCTAAAGCTATGGAACTCGTAAGGAGCCGAAGACATCAGGCATTTCCTAA 477
| ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 425 AATGGGATTCTCTAAAGCTATGGAACTTGTAAGGAGCCGACGACATCAGGCATATCCTAA 484
Query 478 TTCCGGTTTCATTTCGCAGCTCCAGCAATTTGAAAAATCCTTACAAGGTA-TGCATGATT 536
| |||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 485 TCCCGGTTTCATTTCGCAGCTCCAGCAATTTGAAAAATCCATCCAAGGTAATGCATGATT 544
Query 537 GTTTCAGCTGATAAGAAGATTCAAGATAGTGTCATGATGAACTCTCAAGAAATTCCG 593
| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 545 GCTTCAGCTGATAAGAAGATTCAAGATAGTGGCATGATGAACTCTCATGAAATTCCG 601
Score = 176 bits (95), Expect = 2e-43
Identities = 99/101 (98%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 594 TTGATTTCGTGCTGTGAAGGATTTTTTCTTGTGAACTATTGATGGTGAGCACTTTGCCAT 653
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TTGGTTTCGTGCTGTGAAGGATTTTTTCTTGTGAACTATTGATGGTGAGCACTTTGCCAT 699
Query 654 GTCCATTAGCCAATTGAAATAAATGAAAACGCAGAATTTAC 694
|||||||||||||||||||| ||||||||||||||||||||
Sbjct 700 GTCCATTAGCCAATTGAAATGAATGAAAACGCAGAATTTAC 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33606644343
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5