BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477915
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06130.1 | Symbols: | Heavy metal transport/detoxification ... 2268 0.0
AT5G19090.1 | Symbols: | Heavy metal transport/detoxification ... 82.4 1e-14
> AT3G06130.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr3:1852889-1855063 REVERSE LENGTH=1865
Length=1865
Score = 2268 bits (1228), Expect = 0.0
Identities = 1614/1781 (91%), Gaps = 104/1781 (6%)
Strand=Plus/Plus
Query 1 AAATTGAAGCAGCGACTTTAC-T-tctctctctctctttctctctGACTCTGAAAAAGAT 58
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 3 AAATTGAAGCAGCGACTTTACTTCTCTCTCTCTCTCTTTCTCTCTGACTCTGAAAAAGAT 62
Query 59 GAAGTGGAGAAGTTAATGTTCACCAACTTAATACTGCAAACTCTG-AAtctttcttcctt 117
|||||||||||||||||||||||||||||||||||||||| || | |||||||||| |||
Sbjct 63 GAAGTGGAGAAGTTAATGTTCACCAACTTAATACTGCAAAGTC-GAAATCTTTCTTTCTT 121
Query 118 cttctttgccttctttcaagtgc-tt-cgtctctcattctccttctt-c-cctctGTGGC 173
||||||||||||||||||||||| || | |||||||||||||||||| | ||||||| |
Sbjct 122 CTTCTTTGCCTTCTTTCAAGTGCTTTCCCTCTCTCATTCTCCTTCTTCCTCCTCTGTTTC 181
Query 174 TTTGTTCTTTTCAAC-TAAAAAAGCCAGATTGAAGTTGGAAGTACCTGAGGAGCTGTCTC 232
|||||| || | ||| ||||||| |||||||||||| ||||| | |||||||||||||
Sbjct 182 TTTGTTGTTCTAAACTTAAAAAA---AGATTGAAGTTGCAAGTAACAGAGGAGCTGTCTC 238
Query 233 AGATCTGGTTCTAAAGCGAGAGAAAGAGATTTTAAGTTGAGGAAAAATGAGTAAAGAAGA 292
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 239 AGATCTGGTTCTAAAGCGAGAGAAAGAGATTTTGAGTTGAGGAAAAATGAGTAAAGAAGA 298
Query 293 GTTCATGAAGATCCAGACTTGTGTTCTTAAAGTGAATATACACTGTGATGGCTGTAAGCA 352
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 GTTCATGAAGATCCAGACTTGTGTTCTTAAAGTGAACATACACTGTGATGGCTGTAAGCA 358
Query 353 GAAAGTCAAGAAAATCTTGCAGAAAATCGAAGGTGTTTTCACGACCAAGATTGACTCAGA 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAAGTCAAGAAAATCTTGCAGAAAATCGAAGGTGTTTTCACGACCAAGATTGACTCAGA 418
Query 413 GCAAGGGAAAGTGACTGTCTCTGGAAGCGTAGATCCTTCAGTTCTCATCAAGAAGCTCGC 472
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 GCAAGGGAAAGTGACTGTCTCTGGGAGCGTAGATCCTTCAGTTCTCATCAAGAAGCTCGC 478
Query 473 CAAATCTGGTAAACATGCTGAAATCTGGGGAGCTCCAAAGGGTAACAACAATCCGAATCA 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 479 CAAATCTGGTAAACATGCTGAAATCTGGGGAGCTCCAAAGGGTAACAACAATCCCAATCA 538
Query 533 GTCCCAAATGGCCAATCAGTTTAAGGGAATGCAGATTGACAATGGAAAAGGCGCTGGCGG 592
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 539 GTCCCAAATGGCCAATCAGTTTAAGGGAATGCAGATTGACCATGGAAAAGCCGGAGGCGG 598
Query 593 TGGCGGCGGCGGAAACAATAATAACAACAAGAAAGGCCAGAAAA--G-CGGAGGAGG--- 646
||| ||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 599 TGGTGGCGG---AAACAATAATAACAACAAGAAAGGCCAGAAAAACGGCGGAGGAGGTGG 655
Query 647 CGGCGG---AGG---AGGTAACAGTAATGCGCCAAAGATGGGTCAGCAACTGAATCCACA 700
|||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 656 CGGCGGTGGAGGTGGAGGTAACAGTAATGCGCCAAAGATGGGCCAGCAACTGAATCCACA 715
Query 701 ACATATGCAGCAGCTTCA---G----A-A-GATGAAAGGGTTTCAAGATCTGAAGCTTCC 751
|||| ||||||||||||| | | | ||||||||||||||||||||||||||||||
Sbjct 716 ACATTTGCAGCAGCTTCAACAGCTTCAGAAGATGAAAGGGTTTCAAGATCTGAAGCTTCC 775
Query 752 TCCTCAGGTAAAAGGCTTTGTTCCTGTCAACAAGAACCAAAACCAGAAAGGAGTGAAGTT 811
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 TCCTCAGTTAAAAGGCTCTGTTCCTGTCAACAAGAACCAAAACCAGAAAGGAGTCAAGTT 835
Query 812 TGATGTTCCtgaggatgatgatgatgatgattttagtgacgaattcgatgatgagtttac 871
|||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 836 TGATGTCCCTGAAGATGATGATGATGATGATTTCAGTGACGAATTCGATGATGAATTTAC 895
Query 872 tgatgatgatgacgacgagtttgatgatgagtttgatgatCTCCCTCTTCCGTCTAATAA 931
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 896 TGATGATGATGACGACGAGTTTGATGATGAGTTTGACGATCTCCCTCTTCCGTCTAATAA 955
Query 932 GATGAAGCCCAACATGACGATGATGCCTAATGCTCAACAGATGATGATGAACGCTCAAAA 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 956 GATGAAGCCCAACATGACGATGATGCCTAATGCTCAACAGATGATGATGAACGCTCAGAA 1015
Query 992 GAATGCCAATCTTGGCGGTGGCCCTGCTAAAAACGGCGGTAAAGGCGCTCCCGCtggtgg 1051
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1016 GAATGCCAATCTTGCCGGTGGTCCTGCTAAAAACGGCGGTAAAGGCGCTCCCGCTGCTGG 1075
Query 1052 tggcggcggtggc--------aa-gggtggt--c--ctg-g-t--gg-tggt---ggGAA 1090
|||||||||| | || ||||| | | | | | | || |||| |||||
Sbjct 1076 CGGCGGCGGTGCCGGTGGTGGAAAGGGTGCTGGCGGCGGTGCTAAGGGTGGTCCTGGGAA 1135
Query 1091 TCAAAACCAAGGTGGAGGCAAGAACCCCGGTGGTGGACATCCACAAGATGGTAAAAACGG 1150
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1136 TCAAAACCAAGGTGGAGGCAAGAACGGCGGTGGTGGACATCCACAAGATGGTAAAAACGG 1195
Query 1151 CGGTGG------T---CCAAACGCCGGAAAGAAGGGTAACGGCGGAGGTGGGCCCATAGC 1201
|||||| | || ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1196 CGGTGGAGGCGGTGGTCCCAACGCCGGAAAAAAGGGTAACGGCGGAGGTGGGCCCATGGC 1255
Query 1202 TGGAGGACTTCCGGGTGGTTTCCGTCCTATGGGAGGCGGAGGACCACCGAACATGAGCAT 1261
||||||| || |||| |||||||| || |||||||| |||||||||| ||| ||||||||
Sbjct 1256 TGGAGGAGTTTCGGGAGGTTTCCGACCCATGGGAGGTGGAGGACCACAGAATATGAGCAT 1315
Query 1262 GCCAATGGGT----A--TGGGT--GG-T---CCGATGGGGAATATGCCGGCGGTTCAGGG 1309
|||||||||| | ||||| || | |||||||||||||||||||||||||||||
Sbjct 1316 GCCAATGGGTGGTCAAATGGGTATGGGTGGTCCGATGGGGAATATGCCGGCGGTTCAGGG 1375
Query 1310 GTTACCAGCGACCGGTCCAGGCGGTGCACCACAGGGTTATTTCCAAGGGGCCGGGCCAGA 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1376 GTTACCAGCGACCGGTCCAGGCGGTGCACCACAGGGTTATTTCCAAGGGGCCGGGATAGA 1435
Query 1370 TCCTATGCAAATGCAGCAACAGCAA------------TATTTAGCAGCGGTTATGAACCA 1417
||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1436 TCCTATGCAAATGCAGCAACAGCAACAACAACAGCAATATTTAGCGGCGGTTATGAACCA 1495
Query 1418 GCAACGAGCTATGGGGAACGAGCGGTTCCAACCAATGATGTACGCACGACCACCACCGGC 1477
||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 1496 GCAACGAGCTATGGGGAACGAACGGTTCCAACCAATGATGTACGCAAGGCCACCACCGGC 1555
Query 1478 AGTTAACTATATGCCGCCAAACCCGCACCAATATCCGAATCCGCATCCGTA-CC----C- 1531
||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1556 AGTTAACTATATGCCGCCAAACCCGCACCAATATCCGAATCCGCATCCGTATCCGTATCC 1615
Query 1532 GTA----T--CCATATCCTCCACCTTATGGGAATGATCAATACTCTCATGCCTTTAGCGA 1585
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GTACCCGTATCCATATCCTCCACCTTATGGGAATGATCAATACTCTCATGCCTTTAGCGA 1675
Query 1586 CGAGAACACATCAAGCTGTGATATTATGTGAGATGGTTAAAAAATCTTAAATAAAACTTC 1645
|||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 1676 CGAGAACACATCAAGCTGCGATATTATGTGAGATGGTTAAAAA-TCA-AAATAAAACTTT 1733
Query 1646 AATAGTTTGTGTGTAATTGAATCCTAAGTTGGGtttttttt 1686
|||||||||||||| ||||||||||||||||| |||||||
Sbjct 1734 TATAGTTTGTGTGTATTTGAATCCTAAGTTGGGGTTTTTTT 1774
Score = 86.1 bits (46), Expect = 1e-15
Identities = 66/75 (88%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 1665 AATCCTAAGTTG-GGttttttttttttttCCTCACTTTGTGATAGCATCGGTAATTTAAT 1723
||| |||||||| || |||||||||| ||||||||||||||| |||||||||||||
Sbjct 1786 AATGCTAAGTTGTTGTAGGTTTTTTTTTT--TCACTTTGTGATAGCTTCGGTAATTTAAT 1843
Query 1724 AGAATAATATAAAAT 1738
|||||||||||||||
Sbjct 1844 AGAATAATATAAAAT 1858
> AT5G19090.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:6387489-6390024 FORWARD LENGTH=2163
Length=2163
Score = 82.4 bits (44), Expect = 1e-14
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 714 CTTCAGAAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGGTAAA 763
|||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 729 CTTCAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAA 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85943333040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5