BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477918
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06150.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3070 0.0
> AT3G06150.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G19060.1);
Has 61 Blast hits to 59 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1861797-1864116
REVERSE LENGTH=2188
Length=2188
Score = 3070 bits (1662), Expect = 0.0
Identities = 1998/2153 (93%), Gaps = 51/2153 (2%)
Strand=Plus/Plus
Query 23 AAAAATCAAAGACTTTTTAATCCTCCCTTCTCTTCTGGAAATTTTTGGGAGGATTTTAAG 82
||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 45 AAAAATCTAAGACTTTTTAATCCTCCCTTGTCTTCTGGAAA--TCTGGGAGGATTTTAAG 102
Query 83 GTTCTTCTTGTCCAAGAA-TaaaaaaaCTGCTAATTGTGGATTGTTTATCATTCATTG-- 139
||||||||||||||| || |||||||| ||| ||||||||||||| ||||||||||||
Sbjct 103 GTTCTTCTTGTCCAAAAATTAAAAAAATTGCCAATTGTGGATTGTGTATCATTCATTGTC 162
Query 140 ----TC--A------------TC-A--TACGAGTTTGGAGAAGTTATCCATCGTTGAAGC 178
|| | || | |||||||||||||||||||||| | |||||||
Sbjct 163 ATCATCTAATCTTCTTCTTCTTCTACTTACGAGTTTGGAGAAGTTATCCGCCATTGAAGC 222
Query 179 ATTTAGAATGCCGGAGAAAGGAATGATTTTGCCTCCGGTACCGAGCCAATTGGTGCTTTT 238
||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 223 ATTTAAAATGCCGGAGAAAGGAATGATTTTCCCGCCGGTACCGAGCCAATTGGTGATTTT 282
Query 239 ACGGCCAAGCCCTCTGCTTCAATGGCGGCTTGGTGCTCTTACTGCACTCGTCTTCTTCCT 298
||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 283 ACGGCCAAGCCCTCTTCTTCAATGGCGGCTTGGTGCTCTTACAGCACTCGTCTGCTTCCT 342
Query 299 CATGTTAGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTGAGCCATGGAG 358
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 343 TATGTTAGTCGTTTGGAGTATTGACGGTTGTTCGATTCAAAGCTTCGTTCAGCCATGGAG 402
Query 359 ATTCAATGCATACTCTGTTCGAATCAGTCCTTCTCCGTCGCC-TTTAATGTCACCGAAAC 417
||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||||||
Sbjct 403 ATTCAATGCTTACTCTGTTCGAATCAGTCCTTCTCCGTCGCCGTTT-ATGTCAACGAAAC 461
Query 418 CCAATCTAGTATCAGAGAAACCTCACCGCCAAAATCTTACTTTGAAGACGACGATGGTTC 477
||||||||||||||||||||||||||||||||||||| || || || ||||| ||
Sbjct 462 CCAATCTAGTATCAGAGAAACCTCACCGCCAAAATCTCACCTT------GATGATGGCTC 515
Query 478 CACGAAATCTGGTTCCGAAGAAGACGAATCTCACTTCAAACTTGACCCGGGTCCAATTCG 537
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 516 CACGAAATCTGGTTCCGAAGAAGACGAATCTCACTTCAAACTCGACCCGGGTCCAGTTCG 575
Query 538 GGTGGATTGCCGCCGAAT-TGCAGAAGAATTTCACTGCGAATTTGATGAGAAATTGGTTG 596
|||||| |||| | || | |||||||||||||| ||||||||||||||| |||||||
Sbjct 576 AGTGGATAACCGCTGGATCT-CAGAAGAATTTCACGGCGAATTTGATGAGAGGTTGGTTG 634
Query 597 GCTCCGGGAGGAGCGCCGTGCAGAGAAGCGAAAACCGTCGAGATTTCAGTTGCCGGCGTC 656
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |||
Sbjct 635 GCTCCGGGAGGAGCGCCGTGTAGAGAAGCGAAGACCGTCGAGATTTCAGTTCCCGGTGTC 694
Query 657 GACGGGATTGATTCGGTTGAGTTAACCGCCGGTGAGATTCATGAATTCAAATTTCAAGCC 716
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 695 GACGGGATTGATTCTGTGGAGTTAACCGCCGGAGAGATTCATGAATTCAAATTTCAAGCC 754
Query 717 ATAGACGAATCTGGAAAACACGTTTGCATTGGTGGGGACTATTTCGAGACTGATTTATCC 776
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 755 ATAGACGAATCTGGAAAAAACGTTTGCATTGGTGGGGACTATTTCGAGACTGATATATCC 814
Query 777 GGCGAGAATTGGAAATCGAGACCGCCGGTGAAAGATTTCGGTAACGGAACTTACTCTTTC 836
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 815 GGCGAGAACTGGAAATCGAGACCACCGGTGAAAGATTTCGGCAACGGAACTTACTCTTTC 874
Query 837 TCGTTACAGGTTCATCCTGAGTTCGCCGGAGATTAT-AATCTCACCGTCATTTTGCTCTT 895
|| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 875 TCTTTACAGGTTCATCCTGAGTTCGCCGGAGATT-TCAATCTCACCGTCATTTTACTCTT 933
Query 896 CCGTCATTACCAAGGTCTTAAGTTCAGTACCTCACGTTTAGGCTTTGACCGAAAGCTTCG 955
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 934 CCGTCATTACCAAGGTCTTAAGTTTAGTACCTCACGTTTAGGCTTTGACCGAAAGCTTCG 993
Query 956 CAATGTTAGATTACGCTTCGTCAAGAAGCCTGACGTTACTCTGCCGGAGCTCCGGTCATG 1015
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 994 CAATGTTAGATTACGCTTTGTTAAGACGCCTGACGTTACTCTGCCGGAGCTCCGGTCATG 1053
Query 1016 TAAAAAATCTGATTTTAACAGAGCTGCTTGGTCCGGACGGTGGACTAGGCTTGGCAAGAA 1075
||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||||
Sbjct 1054 TAAAAAATCTGATTTTAACAGAGATGCTTGGTCTGGACGATGGACTAGGCTTGGGAAGAA 1113
Query 1076 TGATGAGTGTCAGATCAGCAATGACGGCCGTTACCGCTGCCTCGCTGCGGATTTTCCTTG 1135
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1114 TGATGAGTGTCAGATTAGCAATGACGGGCGTTACCGCTGCCTCGCTGCGGATTTCCCTTG 1173
Query 1136 CCGGAAACCGTGGTGCGACGGAGCGGTTGGAGCGATAGAGAGCAATGGGTGGGTTTACTC 1195
||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||
Sbjct 1174 CCGGAAACCGTGGTGCGACGGTGCGGTTGGAGCTATAGAGAGTAATGGTTGGGTTTACTC 1233
Query 1196 GAGTCATTGCTCCTTCAAGCTCTTCTCTGGC-GATAAGGCTTGGGATTGCTTGAAAAACA 1254
|| |||||||| ||||||||||||||| || || ||||||||||||||||||||| ||
Sbjct 1234 TAGCCATTGCTCTTTCAAGCTCTTCTCT-GCGGAAAAGGCTTGGGATTGCTTGAAAGGCA 1292
Query 1255 AATGGATTTTCTTCTGGGGAGATTCGAATCATGTCGATTCGATCAGAAATTTGCTGAATT 1314
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1293 AATGGATTTTCTTCTGGGGAGATTCGAATCATGTTGATTCGATCAGAAACTTGCTGAATT 1352
Query 1315 TCGTCTTGGGTCATCCGGAAATCCCCGCTGTCCCGAGGAGATTCGATATGAAGTTTTCGA 1374
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1353 TCGTCTTGGGTCATCCTGAAATCCCCGCTGTCCCGAGGAGGTTCGATATGAAGTTTTCGA 1412
Query 1375 ATCCAAAGAACCCATCGGAGACTGTTAGGATCACGAGTAT-TTTCAACGGTCATTGGAAC 1433
|||| |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1413 ATCCGAAGAACCCTTCGGAGACTGTTAGGATCACGAGTATCTTT-AACGGTCATTGGAAC 1471
Query 1434 GAGACCAAGAACTACCAGGGCCTTGATTCGCTCAAAGACAGGGACTTTAGAGAATTGCTC 1493
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1472 GAGACCAAGAACTATCAGGGCCTTGATTCGCTTAAAGACAGGGACTTTAGAGAATTGCTC 1531
Query 1494 AAGAAATACTTC-ACGGAAGAAACAAACCGTGTTCCCGACGTGATGATCGTGAACTCGGG 1552
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 AAGAAGTACTTCAAC-GAAGAAACAAACCGTGTTCCCGACGTGATGATCGTGAACTCGGG 1590
Query 1553 TCTACACGACGGGATTCACTGGACTAGTCTTAGAGCCTTTGCGAAAGGTGCTGAAACCGC 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 TCTACACGACGGGATTCACTGGACTAGTCTTAGAGCCTTTGCGAAAGGTGCTGAAACCGC 1650
Query 1613 AGCTGCATTTTGGAGAGATA-TATTTGATGGGGTCAAAAGCAGGGGATTGCAACCGCCAG 1671
|||||| ||||||||||| | | ||||| |||||||||||||| ||||||||||||||||
Sbjct 1651 AGCTGCGTTTTGGAGAGA-AGTTTTTGACGGGGTCAAAAGCAGAGGATTGCAACCGCCAG 1709
Query 1672 AAGTGATTTTCAGGAACACAATCGCGACAGGCGGTTACGCGAGAACGCTAGCGTTTAACC 1731
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1710 AAGTGATTTTCAGGAACACAATCGCGACAGGCGGGTACGCGAGAATGCTAGCGTTTAACC 1769
Query 1732 CGAGTAAAATGGAGGCTTTTAACGGAGTGTTTCTCGAGAAAATGAGGGACGCGGGATTGG 1791
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1770 CGAGCAAAATGGAGGCGTTTAACGGAGTGTTTCTCGAGAAAATGAGGGATGCGGGATTGG 1829
Query 1792 TCACAAGCGTAGTTGATAACTTCGATATGACGTATCCGTGGCATTATGATAACCGGTGCA 1851
|||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1830 TCACGAGCGTAGTTGATAACTTCGATATGACGTATCCGTGGCACTACGATAACCGTTGCA 1889
Query 1852 ACGATGGAGTTCATTATGGAAGAGCTCCGGCAAAAATGCGGTGGAGGGACGGTGAGATCG 1911
|||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| |
Sbjct 1890 ACGATGGAGTTCATTACGGAAGAGCTCCAGCGAAAATGCGGTGGAGGGACGGTGAGATTG 1949
Query 1912 GACATCAGTACTTTGTGGATTTGATGCTCGTTCACGTATTGCTGAATGCATTGTGTGTAA 1971
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 GACATCAGTACTTTGTGGACTTGATGCTCGTTCACGTATTGCTGAATGCATTGTGTGTAA 2009
Query 1972 GATAGATATGGTAAAGTTTGTT--TTAGGAAGACGAGTCACGGATTCTTTATTTATGTGT 2029
||||||| |||||||||||| | ||||||||| | ||||||||||||| |||||||||
Sbjct 2010 GATAGATGTGGTAAAGTTTGGTAATTAGGAAGA-G--TCACGGATTCTTTGTTTATGTGT 2066
Query 2030 AGACTTAAtttttttGAAGTATAGATTATTATTATTTGCGAAAACTCAACTCAAGCTTGA 2089
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2067 AGACTTAATTTTTTTGAAGTATAGATTATTATTATTTGGGAAAACTCAACTCAAGCTTGA 2126
Query 2090 GTTTTATTGTATAATAGCAAGAGATTGGAGCAACACTTGTGTACTATATGTAT 2142
||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2127 GTTATATTGTATAATAGCAAGAGATTGGAGCAACAATAGTGTACTATATGTAT 2179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106224353220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5