BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477923
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06230.1 | Symbols: ATMKK8, MKK8 | MAP kinase kinase 8 | chr... 1070 0.0
> AT3G06230.1 | Symbols: ATMKK8, MKK8 | MAP kinase kinase 8 | chr3:1885496-1886377
FORWARD LENGTH=882
Length=882
Score = 1070 bits (579), Expect = 0.0
Identities = 702/761 (92%), Gaps = 9/761 (1%)
Strand=Plus/Plus
Query 1 ATGGTTA-GAGTTAGAGATCATCGATTTCTTAATCTCAAGGTGTCTCCTATACAAGCTCC 59
||||||| | ||||||||| ||| ||| ||||| ||||| |||||||||||||||||||
Sbjct 1 ATGGTTATG-GTTAGAGATAATCAATTCCTTAACCTCAAACTGTCTCCTATACAAGCTCC 59
Query 60 TACTACTATCCTCCCTTGCCGCCTCCCCATCGTAGCCGCTAAAAAAGCCTCTGCAACAGT 119
||||||||||| |||||||||| |||||||| || |||||| ||||| ||||||||||||
Sbjct 60 TACTACTATCCCCCCTTGCCGCTTCCCCATCATACCCGCTACAAAAGTCTCTGCAACAGT 119
Query 120 TTCTTCCTGCGCAAGCAACAGTTTTTCTGTAGCTAATTTGGACAGAATCAATGTTCTAGG 179
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 120 TTCTTCCTGCGCAAGCAACACTTTTTCTGTAGCTAATTTGGACAGAATCAGTGTTCTTGG 179
Query 180 CAGTGGAAACGGAGGAACCGTATTCAAAGTTAAAGACAAGACAACCTCAGAGATCTATGC 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 180 CAGTGGAAACGGAGGAACCGTATTCAAAGTTAAGGACAAGACAACCTCAGAGATCTACGC 239
Query 240 GTTGAAGAAAATCAAAGAAAACAT-GGATTCTACTTCCCCCTGCCGCGAGATCGAAATCC 298
|||||||||| | ||||||||| | ||||||||||| |||| ||| |||||||||||||
Sbjct 240 GTTGAAGAAAGTGAAAGAAAAC-TGGGATTCTACTT--CCCT-CCGTGAGATCGAAATCC 295
Query 299 TTCGCGTAGTCAACTCTCCTTACGTCGTAAAGTGTCACGACATCTTCCAGAATCCTTCCG 358
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 296 TTCGCATGGTCAACTCTCCTTACGTCGCAAAGTGTCACGACATCTTCCAGAATCCTTCCG 355
Query 359 GAGAAGTATCTATTCTAATGGAATACATGGATCTTGG-TACGCTCGAGTCTCTAAGCGGT 417
|||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||
Sbjct 356 GAGAAGTATCTATTCTAATGGATTACATGGATCTTGGCT-CGCTCGAGTCTCTACGCGGG 414
Query 418 GTTTCAGAGAACCAACTAGCTTTGATGGCTCGTCAGGTTTTGGAAGGGTTAAACTACTTG 477
||| |||| || ||||| ||||||||| ||||||| ||||||||||| ||| ||||||
Sbjct 415 GTTACAGAAAAACAACTCGCTTTGATGTCTCGTCAAGTTTTGGAAGGAAAAAATTACTTG 474
Query 478 CACGAGCACAAGATCGTACATAGAGATATTAAGCCAGCGAACCTGCTACGTAGCTCGAAA 537
||||||||||||||||| |||||||| || ||||||||||| |||||||||||||| |||
Sbjct 475 CACGAGCACAAGATCGTTCATAGAGACATCAAGCCAGCGAATCTGCTACGTAGCTCAAAA 534
Query 538 GAAGAAGTCAAAATCACTGACTTTGGAGTGAGCAAGATCGTGGTCAAGTCTTTCAACAAG 597
||||||||||| ||| | |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 535 GAAGAAGTCAAGATCGCAGACTTTGGAGTGAGCAAGATCGTGGTCAGGTCTTTAAACAAG 594
Query 598 TGCAACTCGTTCGTCGGCACGTACGCCTACATGAGTCCTGAGAGACTCGATAGTGAAGCT 657
|||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 595 TGCAACTCGTTCGTAGGCACGTTCGCATACATGAGTCCTGAAAGACTCGATAGTGAAGCT 654
Query 658 GATGGTGTTACAGAAGAAGACAAATCAAACGTTTACGCCGGAGATATATGGAGTTTTGGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GATGGTGTTACAGAAGAAGACAAATCAAACGTTTACGCCGGAGATATATGGAGTTTTGGG 714
Query 718 CTTACGATGCTCGAGATCTTGGTGGGTTACTACCCGATGCT 758
|||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTTACGATGCTCGAGATCTTGGTGGGTTACTACCCGATGCT 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36922098045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5