BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477926
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06260.1 | Symbols: GATL4 | galacturonosyltransferase-like 4... 1772 0.0
> AT3G06260.1 | Symbols: GATL4 | galacturonosyltransferase-like
4 | chr3:1893473-1894859 REVERSE LENGTH=1387
Length=1387
Score = 1772 bits (959), Expect = 0.0
Identities = 1028/1062 (97%), Gaps = 1/1062 (0%)
Strand=Plus/Plus
Query 1 ATGGCCTCAAGGAGCCTCTCCTATACACAACTCCTAGGCCTCCTGTCCTTTATCCTCCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCCTCAAGGAGCCTCTCCTATACACAACTCCTAGGCCTCCTGTCCTTTATACTCCTC 60
Query 61 TTGGTCACAACCACCACTATGGCGGTTCGTGTTGGAGTCATTCTTCATAAGCCCTCTGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTGGTCACAACCACCACTATGGCGGTTCGTGTTGGAGTCATTCTTCATAAGCCTTCTGCT 120
Query 121 CCAACTCTTCCTGTTTTCAGAGAAGCCCCTGCTTTTAGAAACGGTGATCAATGCGGAACC 180
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct 121 CCAACTCTTCCTGTTTTCAGAGAAGCCCCGGCTTTTCGAAACGGTGATCAATGCGGGACT 180
Query 181 CGTGAGGCTGATCAGATTCATATCGCCATGACTCTCGACACAAACTACCTCCGTGGCACA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTGAGGCTGATCAGATTCATATCGCCATGACTCTCGACACAAACTACCTCCGTGGCACA 240
Query 241 ATGGCTGCCGTTTTGTCTCTCCTTCAACATTCCACTTGCCCTGAAAACCTCTCTTTTCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGGCTGCCGTTTTGTCTCTCCTTCAACATTCCACTTGCCCTGAAAACCTCTCTTTTCAT 300
Query 301 TTCCTCTCCCTTCCTCATTTCGAAAACGACCTCTTCACCAGCATCAAATCAACCTTTCCT 360
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TTCCTGTCCCTTCCTCATTTCGAAAACGACCTTTTCACCAGCATCAAATCAACCTTTCCT 360
Query 361 TACCTAAACTTCAAGATTTATCAGTTTGATCCAAACCTCGTCCGCAGTAAAATATCGAAA 420
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 361 TACCTAAACTTCAAGATTTATCAGTTTGATCCAAACCTCGTCCGCAGCAAGATATCGAAA 420
Query 421 TCCATCAGGCAAGCCCTCGACCAGCCTCTTAACTACGCGAGAATCTACCTCGCGGATATC 480
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 421 TCCATCAGGCAAGCCCTTGATCAGCCTCTTAACTACGCAAGAATCTACCTCGCGGATATC 480
Query 481 ATTCCTAGTAGCGTTGACAGGATCATCTACTTAGATTCGGACCTCGTTGTGGTAGATGAC 540
|| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 481 ATCCCTAGCAGCGTTGACAGGATCATCTACTTAGACTCAGACCTCGTTGTGGTAGACGAC 540
Query 541 ATAGAGAAGCTGTGGCATGTCGAGATGGAAGGTAAAGTGGTGGCTGCTCCCGAGTACTGC 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATAGAGAAGCTGTGGCATGTGGAGATGGAAGGTAAAGTGGTGGCTGCTCCCGAGTACTGC 600
Query 601 CACGCAAACTTCACCCATTATTTCACAAAAACTTTCTGGTCAGACCCGGTATTGGTGAAA 660
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 601 CACGCAAACTTCACCCATTATTTCACAAGAACTTTCTGGTCAGACCCGGTATTGGTCAAA 660
Query 661 GTTCTTGAAGGAAAACGCCCGTGTTATTTCAACACAGGGGTGATGGTTGTGGATGTAAAC 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTCTTGAAGGAAAACGTCCGTGTTATTTCAACACAGGGGTGATGGTTGTGGATGTAAAC 720
Query 721 AAATGGAGGAAAGGAATGTATACACAGAAGGTAGAAGAATGGATGACAATTCAGAAGCAG 780
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 AAATGGAGGAAAGGAATGTATACACAGAAGGTAGAAGAGTGGATGACAATTCAGAAGCAG 780
Query 781 AAGAGGATATACCATTTGGGATCATTGCCTCCGTTTCTGCTGATATTCGCCGGTGATATA 840
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 AAGAGGATATACCATTTGGGATCATTACCTCCGTTTCTGCTGATATTCGCCGGTGATATA 840
Query 841 AAAGCGGTTAATCATAGGTGGAACCAGCACGGCCTCGGAGGGGATAATTTCGAAGGAAGA 900
||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 841 AAAGCGGTTAATCATAGGTGGAACCAGCATGGTCTAGGAGGTGATAATTTCGAAGGAAGA 900
Query 901 TGTAGAACGTTGCATCCGGGACCGATAAGTCTACTTCATTGGAGCGGAAAAGGGAAGCCA 960
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 901 TGTAGAACGTTGCATCCGGGACCGATAAGTCTTCTTCACTGGAGTGGAAAAGGGAAGCCA 960
Query 961 TGGTTGAGACTAGATTCAAGGAAGCCTTGTATCGTTGATCATCTATGGGCTCCGTATGAT 1020
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 TGGTTAAGACTAGATTCAAGGAAGCCTTGTATCGTTGATCATCTATGGGCACCGTATGAT 1020
Query 1021 CTGTACCGTTCATCAAGACATTCATTAGAAGAGTAGAGTAGG 1062
|||||||||||||||||||||||||||||||||||||| |||
Sbjct 1021 CTGTACCGTTCATCAAGACATTCATTAGAAGAGTAGAG-AGG 1061
Score = 392 bits (212), Expect = 4e-108
Identities = 268/291 (92%), Gaps = 19/291 (7%)
Strand=Plus/Plus
Query 1059 TAGGAGAGGAGAAGATAC-AAACAAAGCAGGGGTTATTTAGCGATCAAAGAGAGCCAAAA 1117
|||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1094 TAGGAGAGGAGAAGATACAAAAGAAAGCAGGGGTT-TTTAGCGATCAAAGAGAGCCAAAA 1152
Query 1118 ATG-TTCATTACAAAGTG--AAAAAG-TGTAATGTT-AACACATTGTTGTGCATTTGAGC 1172
||| |||||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1153 ATGTTTCATTACAAAGTGAAAAAAAGTTGTAATGTTAAACACATTGTTGTGCATTTGAGC 1212
Query 1173 TCAGAGTGTGTTTCATCACAAGA-GA--TAGATGGTGTTATCATCATCAt--ttttttt- 1226
||||||||||||||||||||||| || |||||||| ||||||||||||| |||||||
Sbjct 1213 TCAGAGTGTGTTTCATCACAAGAAGAGATAGATGGTATTATCATCATCATCATTTTTTTT 1272
Query 1227 --ctcctttcttcg-tttt-tttcCCCTCTCTTTGATTCAAACCTTTAGAATATTCCGCG 1282
|||||||||||| |||| |||||| |||||||||||||||||||||||||||||| ||
Sbjct 1273 TTCTCCTTTCTTCGGTTTTGTTTCCC-TCTCTTTGATTCAAACCTTTAGAATATTCCTCG 1331
Query 1283 TGTAATATACATAGGTACaaaaaaaaaTGGAGGATTAAATTCATTCTTTTT 1333
||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1332 TGTAATATACATAGGTACAAACAAAA-TGGAGGATTAAATTCATTCTTTTT 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65612112315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5