BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477927
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06270.1 | Symbols: | Protein phosphatase 2C family protein... 2689 0.0
> AT3G06270.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:1896137-1898034 FORWARD LENGTH=1820
Length=1820
Score = 2689 bits (1456), Expect = 0.0
Identities = 1718/1837 (94%), Gaps = 47/1837 (3%)
Strand=Plus/Plus
Query 1 CGATAATCTCAAAAAGTTTTTGGTTTGATTTGGGAATTCGTGCGCGGCTGTGGCAGAGGC 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CGATAATCTCAAAAAGTTTTTGGTTTGATTTGGGAACTCGTGCGCGGCTGTGGCAGAGGC 60
Query 61 CAAACCCACCCGTGTA--CCATCCGTCGGATCCACCAAACCAA-AGTC--TCA--tctct 113
|||||||||||||||| ||||||||||||||||||||||||| | || ||| |||||
Sbjct 61 CAAACCCACCCGTGTACTCCATCCGTCGGATCCACCAAACCAATATTCTTTCATCTCTCT 120
Query 114 ctctctctctctctctc-tc-tc-tc-tcttcttct-tcgtt-ttc-ttc-tc--GAACA 163
||||||||||||||||| || || || ||||||||| | || ||| ||| || |||||
Sbjct 121 CTCTCTCTCTCTCTCTCTTCTTCTTCGTCTTCTTCTCTTTTTATTCTTTCTTCAGGAACA 180
Query 164 AATTCCTCTGCTTT-GGCATTTTAGGGTTTCTCAAA-TTTTGACGCTTTCTCTTAAAAGG 221
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 AATTCCTCTGCTTTGGGCATTTTAGGGTTTCTCAAATTTTTGACGCTTTCTCTTAAAAGG 240
Query 222 GTTGACGACATAACCCTTT-GGGagaaaaaacaaaggttgaggaagacccccaa-g-gaa 278
|||||||| |||||||||| || ||||||||||||||||||||||||| |||| | |||
Sbjct 241 GTTGACGAAATAACCCTTTAAGG-GAAAAAACAAAGGTTGAGGAAGACCACCAAGGTGAA 299
Query 279 aaaagaaagaagaaTTCGaacaacaacaacaacaacaacaacaaGATAAAGTTACGAATT 338
|||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 300 AAAAGAAAGAAGAATTCG---------AACAACAGCAGCAACAAGATAAAGTTACGAATT 350
Query 339 TTCCCTC-TTTGTAACCTTTGTTTCTCTTCTTCCTCTTCCTCTACTTTTTTCCA-TAAAG 396
|| |||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 351 TTTCCTCTTTTGTAACCTTTGTTTCTCTTCTTCCTCTTCCTCCATTTTTTTCCATTAAAG 410
Query 397 ATTCTGCCTTTGGATTTCAATTTCGTC-TTCCTTTTTCGATTTTGCCGCGTTTAACATGA 455
||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 411 ATTCTGCCTTTGGGTTCCAATTTCGTCTTTCCTTTTTCGATTTTGCCGCGTTTAACATGA 470
Query 456 CA-TCTGCAAAACCCTACCCTTTTGTGGACGCCATTGTTGATTCCCACGAATTTCGTTTT 514
|| || |||||||||||| ||||| |||||||||||||||| |||||||||||||||||
Sbjct 471 CATTC-GCAAAACCCTACACTTTTCTGGACGCCATTGTTGAATCCCACGAATTTCGTTTC 529
Query 515 CCTAGAGATTGCTTGTTCTAGCCCGAGCTAGGAGCTCAAGATTTTTGAAGGAAAGTTTCG 574
|||||||||||||||||||||||| |||| | |||| ||||||||| |||||||| ||
Sbjct 530 CCTAGAGATTGCTTGTTCTAGCCCCAGCTTGAAGCTAAAGATTTTTCAAGGAAAG-CACG 588
Query 575 ttttttttttcttttttGCGGAATCGAATCTG-TTTTCTGCGTTATGGGTTGTGTTCAAT 633
||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 589 ---TTTTTTT-GTTTGTGC--AATCGAATCTGTTTTTCTGCGTTATGGGTTGTGTTCAAT 642
Query 634 GCAAATGTTGTAGCCGATATCCGTCGTCATCATCAGATGGAGATTCTCGGGGACCTTTAG 693
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 643 GCAAATGTTGTAGCCGATATCCTTCGTCATCATCAGATGGAGATTCTCGTGGACCTTTAG 702
Query 694 AAGCCAATGGTGTTCTCAAAGGGAAAGATCAGAAACCTCTTGGATCTATTCACGTTCCTT 753
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AAGCCAATGGTGTTCTTAAGGGGAAAGATCAGAAACCTCTTGGATCTATTCACGTTCCTT 762
Query 754 CTCCTAATTTCGACATGGTTTACTCTGTCTTATCTCAACGAGGCTACTATCCTGATTCAC 813
||||||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||
Sbjct 763 CTCCTAATTTCGATATGGTTTACTCTGTGTTATCTCAACGAGGCTATTACCCTGACTCAC 822
Query 814 CTGATAAAGAGAATCAAGACACTTACTGCATCAAAACCGAGCTTCAAGGTAACCCGAATG 873
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 823 CTGATAAGGAGAATCAAGACACTTACTGCATCAAAACAGAGCTTCAAGGTAACCCGAATG 882
Query 874 TTCATTTCTTCGGTGTCTTTGATGGTCACGGTGTGTTTGGTACGCAGTGTTCGAATTTTG 933
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 883 TTCATTTCTTCGGTGTCTTTGATGGTCACGGTGTGTTGGGTACGCAGTGTTCGAATTTTG 942
Query 934 TCAAGGAGAGGGTTGTGGAAATGTTGTCTGAAGACCCAACTCTGCTTGAGGATCCTGAGA 993
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 943 TTAAGGAGAGGGTTGTGGAAATGTTGTCTGAAGACCCAACTCTGCTTGAGGATCCGGAGA 1002
Query 994 AAGCTTACAAGTCTGCTTTTTTAAGGGTTAATGAGGAGTTACATGATAGTGAAATCGATG 1053
|||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct 1003 AAGCTTACAAGTCTGCTTTTTTGAGGGTTAATGAAGAGTTACACGATAGTGAAATCGACG 1062
Query 1054 ATTCGATGAGTGGTACTACTGCCATTACGGTTCTTGTTGTTGGGGATAAGATTTATGTTG 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ATTCGATGAGTGGTACTACTGCCATTACGGTTCTTGTTGTTGGGGATAAGATTTATGTTG 1122
Query 1114 CCAATGTAGGGGATTCGAGGGCGGTTCTTGCTGTTAAAGACAGGAATCGGATTCTGGCAG 1173
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1123 CCAATGTAGGAGATTCGAGGGCGGTTCTCGCTGTTAAAGACAGGAATCGGATTCTAGCAG 1182
Query 1174 AGGATTTGTCTTATGATCAGACGCCTTTTAGGAAAGATGAATGCGAGAGGGTTAAAGCTT 1233
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AGGATTTGTCTTACGATCAAACGCCTTTTAGGAAAGATGAATGCGAGAGGGTTAAAGCTT 1242
Query 1234 GTGGTGCTAGAGTGCTGAGTGTGGATCAAGTGGAAGGACTGAAAGATCCAAATATACAAA 1293
|||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1243 GTGGAGCTAGAGTGCTGAGTGTGGATCAAGTGGAAGGGTTGAAAGATCCGAATATACAAA 1302
Query 1294 CATGGGCAAACGAAGAGAGCGAAGGAGGTGATCCGCCGAGACTTTGGGTACAAAACGGGA 1353
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1303 CATGGGCAAACGAAGAGAGTGAAGGAGGAGATCCGCCGAGACTTTGGGTACAAAACGGGA 1362
Query 1354 TGTATCCGGGAACCGCATTTACAAGGAGTGTTGGAGATTTTACAGCTGAGAGCATTGGAG 1413
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1363 TGTATCCGGGAACCGCATTCACGAGGAGTGTTGGTGATTTTACAGCTGAGAGCATTGGAG 1422
Query 1414 TTACTGCAGAACCAGAAGTGTCAATGGTTCATCTTTCGCCTAACCATTTGTTCTTTGTTG 1473
||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1423 TTATTGCAGAGCCAGAAGTGTCAATGGTTCATCTCTCGCCTAACCATTTGTTCTTTGTTG 1482
Query 1474 TTGCAAGCGATGGGATTTTCGAGTTTCTTCCAAGCCAAGCTGTTGTTGATATGGTGGGGA 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TTGCAAGCGATGGGATTTTCGAGTTTCTTCCAAGCCAAGCTGTTGTTGATATGGTGGGGA 1542
Query 1534 GATACGCTGATCCGCGCGATGGATGCGCTGCAGCTGCAGCGGAATCATACAAACTGTGGT 1593
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1543 GATACGCAGATCCGCGCGATGGATGCGCTGCAGCAGCAGCGGAATCATATAAACTGTGGT 1602
Query 1594 TGGAGCATGAGAATAGGACAGATGATATCACAATTATCATTGTACAGATTAAAAAGCTGT 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TGGAGCATGAGAATAGGACAGATGATATCACAATTATCATTGTACAGATTAAAAAGCTGT 1662
Query 1654 CTAATGAATGATTCATATTCCTATTTGCCCCTTTGTTTGATTCTTCTGTACTGTA-TGTC 1712
|||||||||||| || |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1663 CTAATGAATGATGCACATTCCTATTTGCCCCTTTGTTTGATTTTTCTGTACTGTAATGTT 1722
Query 1713 ACAGATTCCATCCAACTATATAGCAAAGTTAAAAGTAATGCTCTCTCTTTTGTGTATGAG 1772
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 ACAGGTTTCATCCAACTATATAGCAAAGTTAAAAGTAATGCTCTCTCTTTTGTGTATGAG 1782
Query 1773 CTTCTTTTACCAAAGATTAAATGACGTGTTTACTACG 1809
||||||||||||| |||||||||||||||||| ||||
Sbjct 1783 CTTCTTTTACCAA-GATTAAATGACGTGTTTAATACG 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89507571735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5