BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477930 Length=617 Score E Sequences producing significant alignments: (Bits) Value AT3G06310.1 | Symbols: | Cox19-like CHCH family protein | chr3... 673 0.0 > AT3G06310.1 | Symbols: | Cox19-like CHCH family protein | chr3:1912968-1914392 REVERSE LENGTH=754 Length=754 Score = 673 bits (364), Expect = 0.0 Identities = 525/595 (88%), Gaps = 42/595 (7%) Strand=Plus/Plus Query 26 CTCTCAGTGGAGAAGAAGACTCGAGTCATCTGCAGAAGAA-ATTCGCGATCGGATAGGAT 84 ||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |||| Sbjct 39 CTCTCAGTGGAGAAGAAGACTCGAGTCATCTGCAGAA-AAGATTCCCGATCGGATTGGAT 97 Query 85 CATATAAGA-TTTAGGGGTTTGGAAAAAATCTTGAGCTATGGAGGCGAATGCGGCGGTGG 143 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 98 CATATAAGATTTTAGGGATTTGGAAAAAATCTTGAGCTATGGAGGCGAATGCGGCGGTGG 157 Query 144 ACGGAACGGGGAATCCGATCCCTACGTCGGCGGTTTTGACAGCTTCGGCGAAGCATATAG 203 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 158 ACGGAACGGGGAATCCGATCCCTACGTCGGCGGTTTTAACAGCTTCGGCGAAGCATATAG 217 Query 204 GAATGAGATGTATGCCGGAAAACACGGCGTTCCTGAAATGCAAGAAGAATGATCCTAATC 263 |||| || |||||||||||||||| ||||||||||||||| ||||||||||||||||| | Sbjct 218 GAATCAGGTGTATGCCGGAAAACATGGCGTTCCTGAAATGTAAGAAGAATGATCCTAACC 277 Query 264 CAGAGAAATGCCTCGAGAAAGGACGTGACGTCACTCGCTGTGTTCTTGGCCTGCTCAAGG 323 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 278 CAGAGAAATGCCTCGAGAAGGGACGTGACGTCACTCGCTGTGTTCTTGGCCTGCTGAAGG 337 Query 324 ATCTTCACCAGAGATGCCCCAAGGAGATGGATGCTTACGTTGGATGCATGTATTACTACA 383 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 338 ATCTTCACCAGAGATGCCCAAAGGAGATGGATGCTTACGTTGGATGCATGTATTACTACA 397 Query 384 CCAACGAGTTTGATTTGTGTCGGAAAGAGCAAGAAG-TCTTCGAGAAAGCGTGCCCGTTG 442 ||||||||||||| |||||||||||||||||||||| | || ||||||| ||| |||||| Sbjct 398 CCAACGAGTTTGAGTTGTGTCGGAAAGAGCAAGAAGCTTTT-GAGAAAGTGTGTCCGTTG 456 Query 443 AAATGAGA----C---T------C---CT---AATAAGCAAATGTTCATTCTGAGTCTTG 483 |||||||| | | | || |||||||||||||||||| ||| ||| | Sbjct 457 AAATGAGAAAGTCAAGTTTTTATCTGTCTCCTAATAAGCAAATGTTCATTTTGACTCTGG 516 Query 484 AGCTTTACTCTAATCACT--------GCT---TA-TT-TT--CCTTTCCTGGTAATGGAA 528 ||| |||||||||||||| ||| | || || ||||| |||||||||||| Sbjct 517 AGCGTTACTCTAATCACTCTTCCATCGCTGCCTGCTTCTTTTCCTTTTCTGGTAATGGAA 576 Query 529 GACCATTAAATCATGTCATATTGTCATGTTTCTTAATTTGTCCAATTCTCCCGAG 583 |||| ||||| ||||| |||||||| |||||| | || ||||| |||||||||| Sbjct 577 GACCTTTAAACCATGTAATATTGTCGTGTTTCCT--TT-GTCCAGTTCTCCCGAG 628 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29738615024 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5