BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477930
Length=617
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06310.1 | Symbols: | Cox19-like CHCH family protein | chr3... 673 0.0
> AT3G06310.1 | Symbols: | Cox19-like CHCH family protein | chr3:1912968-1914392
REVERSE LENGTH=754
Length=754
Score = 673 bits (364), Expect = 0.0
Identities = 525/595 (88%), Gaps = 42/595 (7%)
Strand=Plus/Plus
Query 26 CTCTCAGTGGAGAAGAAGACTCGAGTCATCTGCAGAAGAA-ATTCGCGATCGGATAGGAT 84
||||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||||
Sbjct 39 CTCTCAGTGGAGAAGAAGACTCGAGTCATCTGCAGAA-AAGATTCCCGATCGGATTGGAT 97
Query 85 CATATAAGA-TTTAGGGGTTTGGAAAAAATCTTGAGCTATGGAGGCGAATGCGGCGGTGG 143
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 CATATAAGATTTTAGGGATTTGGAAAAAATCTTGAGCTATGGAGGCGAATGCGGCGGTGG 157
Query 144 ACGGAACGGGGAATCCGATCCCTACGTCGGCGGTTTTGACAGCTTCGGCGAAGCATATAG 203
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 158 ACGGAACGGGGAATCCGATCCCTACGTCGGCGGTTTTAACAGCTTCGGCGAAGCATATAG 217
Query 204 GAATGAGATGTATGCCGGAAAACACGGCGTTCCTGAAATGCAAGAAGAATGATCCTAATC 263
|||| || |||||||||||||||| ||||||||||||||| ||||||||||||||||| |
Sbjct 218 GAATCAGGTGTATGCCGGAAAACATGGCGTTCCTGAAATGTAAGAAGAATGATCCTAACC 277
Query 264 CAGAGAAATGCCTCGAGAAAGGACGTGACGTCACTCGCTGTGTTCTTGGCCTGCTCAAGG 323
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 278 CAGAGAAATGCCTCGAGAAGGGACGTGACGTCACTCGCTGTGTTCTTGGCCTGCTGAAGG 337
Query 324 ATCTTCACCAGAGATGCCCCAAGGAGATGGATGCTTACGTTGGATGCATGTATTACTACA 383
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 338 ATCTTCACCAGAGATGCCCAAAGGAGATGGATGCTTACGTTGGATGCATGTATTACTACA 397
Query 384 CCAACGAGTTTGATTTGTGTCGGAAAGAGCAAGAAG-TCTTCGAGAAAGCGTGCCCGTTG 442
||||||||||||| |||||||||||||||||||||| | || ||||||| ||| ||||||
Sbjct 398 CCAACGAGTTTGAGTTGTGTCGGAAAGAGCAAGAAGCTTTT-GAGAAAGTGTGTCCGTTG 456
Query 443 AAATGAGA----C---T------C---CT---AATAAGCAAATGTTCATTCTGAGTCTTG 483
|||||||| | | | || |||||||||||||||||| ||| ||| |
Sbjct 457 AAATGAGAAAGTCAAGTTTTTATCTGTCTCCTAATAAGCAAATGTTCATTTTGACTCTGG 516
Query 484 AGCTTTACTCTAATCACT--------GCT---TA-TT-TT--CCTTTCCTGGTAATGGAA 528
||| |||||||||||||| ||| | || || ||||| ||||||||||||
Sbjct 517 AGCGTTACTCTAATCACTCTTCCATCGCTGCCTGCTTCTTTTCCTTTTCTGGTAATGGAA 576
Query 529 GACCATTAAATCATGTCATATTGTCATGTTTCTTAATTTGTCCAATTCTCCCGAG 583
|||| ||||| ||||| |||||||| |||||| | || ||||| ||||||||||
Sbjct 577 GACCTTTAAACCATGTAATATTGTCGTGTTTCCT--TT-GTCCAGTTCTCCCGAG 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29738615024
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5