BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477932
Length=375
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06320.1 | Symbols: | Ribosomal protein L33 family protein ... 560 3e-159
AT5G18790.1 | Symbols: | Ribosomal protein L33 family protein ... 261 3e-69
> AT3G06320.1 | Symbols: | Ribosomal protein L33 family protein
| chr3:1914511-1915318 FORWARD LENGTH=442
Length=442
Score = 560 bits (303), Expect = 3e-159
Identities = 357/381 (94%), Gaps = 12/381 (3%)
Strand=Plus/Plus
Query 1 GTCATCTTCGTCGGCGAAACCAATTTTCGGACTCCGTCGAATTCG-ATTTTACAGATATG 59
||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||
Sbjct 8 GTCATCTTCGTCGGCGAAATCAATTTTCGGACTCCGTCGAATTCGAATTTT-CAGAAATG 66
Query 60 GGTGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAACTGGA 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GGAGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAACTGGA 126
Query 120 TTCTTCTATGTCAAGAGGAAGAGTACTAAGGGACTTCTTGAGAAGCTCGAGTTCCGTAAG 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 127 TTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGAAGCTCGAGTTCCGTAAG 186
Query 180 TACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGATGAA-A 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 187 TACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGAT-AAGA 245
Query 239 CAAAA-AAGCTTGCTTTTGCCTGTTATGATCAATCA-AGTATCAAATAA-CTTTTCAATT 295
||||| |||||||||||||||||||||| | |||| || ||||||||| | ||||||||
Sbjct 246 CAAAAGAAGCTTGCTTTTGCCTGTTATGG-CTATCATAG-ATCAAATAAACGTTTCAATT 303
Query 296 TAGTGTTCTATCGAAACTTGTTTGTAGGATTCTC-AAACACTTAAGTGCAGTTTGATTGT 354
||| |||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||
Sbjct 304 TAGAGTTCTATCGAAACTC-TTTGTAGGATTCTCTAAA-ACTTAAGTGCAGATTGATTGT 361
Query 355 ACTGTGATCAATCTCGACACC 375
| |||||||||| ||||||||
Sbjct 362 ATTGTGATCAATTTCGACACC 382
> AT5G18790.1 | Symbols: | Ribosomal protein L33 family protein
| chr5:6266092-6266907 REVERSE LENGTH=462
Length=462
Score = 261 bits (141), Expect = 3e-69
Identities = 165/177 (93%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 57 ATGGGTGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTAGTTTCAGCAGCTGGAACT 116
||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 54 ATGGGGGACAAGAGGAAGAAGACGTTCATGTTCATCCGTCTTGTCTCAGCTGCTGGAACT 113
Query 117 GGATTCTTCTATGTCAAGAGGAAGAGTACTAAGGGACTTCTTGAGAAGCTCGAGTTCCGT 176
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 114 GGTTTCTTCTATGTCAAGAGGAAGAGTACCAAGGGACTTCTTGAGAAGCTCGAGTTCCGT 173
Query 177 AAGTACGATCCTCGAGTTAATCGCCATGTCCTCTTTACAGAGCAGAAAATGAAGTGA 233
||||||||||||||||| || || ||||||||||| || |||||||| |||||||||
Sbjct 174 AAGTACGATCCTCGAGTCAACCGTCATGTCCTCTTCACTGAGCAGAAGATGAAGTGA 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17643979899
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5