BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477933
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06330.1 | Symbols: | RING/U-box superfamily protein | chr3... 2222 0.0
AT5G18760.1 | Symbols: | RING/U-box superfamily protein | chr5... 477 1e-133
> AT3G06330.1 | Symbols: | RING/U-box superfamily protein | chr3:1917240-1919925
FORWARD LENGTH=1591
Length=1591
Score = 2222 bits (1203), Expect = 0.0
Identities = 1411/1508 (94%), Gaps = 28/1508 (2%)
Strand=Plus/Plus
Query 1 TTATAGATTTGCTTCTTTCTCTCTCAGAATTTTTGTCGAGCGGATTTGATTTCATATTGA 60
||||||||||| ||||||||||||||||||||||||||| | || |||||||||| |
Sbjct 11 TTATAGATTTGATTCTTTCTCTCTCAGAATTTTTGTCGA-CCGA----ATTTCATATTCA 65
Query 61 TATATAGTTTTA-TATTATAATCTGGTTAGATGAAGATGCAAGATTCGGCAGCTCAACAA 119
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 66 TATATAGTTTTATTA-AATAATCTGGTTAGATGAAGATGCAAGATTCGGCAGCTCAAGAA 124
Query 120 CCGGAAATTGCTATAATCGTGGGAGAttcttcttcttcttcttc-tCA-GGTTGATCATC 177
||||||||||||||||||||||||||||||||||||||||| || ||| || || ||
Sbjct 125 CCGGAAATTGCTATAATCGTGGGAGATTCTTCTTCTTCTTC-TCTTCATTCTTCTTC-TC 182
Query 178 AGGTAAAAGAAAAATCTACTGAAGATGTGCCGAGCTCTCAATCTATCGAAACCCACTTGG 237
|||||| ||||||||||||||||||||||||||||| | || | |||||||
Sbjct 183 AGGTAACAGAAAAATCTACTGAAGATGTGCCGAGCT-GC--TC--T-------CACTTGG 230
Query 238 ATCTGTCAATACAAATACC-TCTCAGACCAATTCCATTCGGTAACGGCCGTAACCCAAAG 296
|||| |||||||||||||| || |||| || |||||||||||||||||||||||||||||
Sbjct 231 ATCTTTCAATACAAATACCTTC-CAGATCACTTCCATTCGGTAACGGCCGTAACCCAAAG 289
Query 297 AGTTCATTGAAGTCCACTAGTTCATTCAAAAGTGGCAGTACATCCTCACCAAGAGGGATC 356
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 290 GGTTCATTGAAGTCCACTCCTTCATTCAAAAGTGGCACTACATCCTCACCAAGAGGAATC 349
Query 357 TTGCGCAATTTAAGCTTGAAAAAGAAAGTTATTTCTCAACCCGAAAGCGAGAGAAGCTCC 416
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TTGCGGAATTTAAGCTTGAAAAAGAAAGTTATTTCTCAACCCGAAAGCGAGAGAAGCTCC 409
Query 417 CTACTATCTCCCGGTCTCATGGAAACCGCTAAAAAGCCTAATGCTACTGGTTCCACAACT 476
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TTACTATCTCCTGGTCTCATGGAAACCGCTAAAAAGCCTAATGCTACTGGTTCCACAACT 469
Query 477 TCGCCTTATTGGAAAAGATGCTTATCGCTTCCTAATAGACATGCTGCAAAATTGTCTCCG 536
|| || |||||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 470 TCTCCATATTGGAAAAGATGCTTATCGCTTCCTAGTAGACAAGCTGCAAAACTGTCTCCT 529
Query 537 GTTGTATCTACACAAGTTTCAGCTGGGGTGCCTGGTGAGCCGCCTAATAAAGATTATCCA 596
|| || ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 530 GTGGTTTCTACACAACTTTCAGCTGGGGTGCCTGGTGACCCGCCTAATAAAGATTATTCA 589
Query 597 AGGTCCTTGTCCATGCCCGGAAGAAACAAAGTGATTGTGCGATCCATATCTTTTGACAAC 656
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 590 AGGTCCTTGTCCATGCCCGGAAGAAACAAAGTTATTGTGCGATCCATATCTTTTGACAAC 649
Query 657 CACAAAGCCCGTGTTTCCAGTGAAACAAGTGCAGATCAAATCTCTTCCGTTCCTCCTGAA 716
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 650 CACAAAGCCCGTGTTTCCAGTGAAACAAGTGCAGATCAAGTCTCTTCCGTTCCTCCTGAA 709
Query 717 GAAACTGATGAAGAAATTCCCGAAGAAGAAGCCGTGTGCAGGATCTGTCTGGATGTGTGC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 710 GAAACTGATGAAGAAATTCCCGAAGAAGAAGCCGTGTGCAGGATCTGTCTGGACGTGTGC 769
Query 777 GAAGAGGGCAATACTTTGAAAATGGAGTGCAGCTGCAAAGGTGATCTCAGACTTGTTCAT 836
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 770 GAAGAAGGAAATACTTTGAAAATGGAATGCAGCTGCAAAGGTGATCTCAGACTTGTTCAT 829
Query 837 GAAGCGTGTGCCATGAAATGGTTTAGTACAAAGGGAACAAGAACCTGTGACGTCTGTAGA 896
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GAAGCTTGTGCAATGAAATGGTTTAGTACAAAGGGAACAAGAACCTGTGACGTCTGTAGA 889
Query 897 CAAGAAGTAAAGAACTTACCAGTTACATTGGTTCGTGTGCCCACAAGTAATCAACCAAAC 956
|||| |||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 890 CAAGTAGTACAGAACTTACCAGTTACATTGGTTCGTGTGCCCACACCTAATCAACAAAAC 949
Query 957 AACAGACGTGATCGCGGTCAACCA-AATATGCCTTCACAAACCATAAGTGCTTGGCAAGA 1015
|||||||||| | || ||||| || |||||||| ||||||||| | ||||||||||||||
Sbjct 950 AACAGACGTGGTAGCAGTCAA-CAGAATATGCCGTCACAAACCGTTAGTGCTTGGCAAGA 1008
Query 1016 GTTTGTGGTGCTAGTTCTAATCAGCACAGTCTGCTACTTCTTCTTCCTCGAGCAATTACT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GTTTGTGGTGCTAGTTCTAATCAGCACAGTCTGCTACTTCTTCTTCCTCGAGCAATTACT 1068
Query 1076 GATTCGTGACTTGAACAAGCAAGCTATTTACATCGCGGCGCCATTTTCACTTACGTTAGG 1135
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1069 GATTCGTGACTTGAACAAACAAGCTATTTACATCGCAGCACCATTTTCACTTACGTTAGG 1128
Query 1136 CCTCTTAGCATCCATTTTTGCCATTGTCCTCGCTATCAGAGAATACATATGGACATACGC 1195
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1129 CCTCTTAGCATCCATTTTTGCCATTGTTCTCGCTATCAGAGAATACATATGGACATACGC 1188
Query 1196 AGCACTCGAGTTTGCGCTTGTGGGCATGTTGGTTCATATATTATATGCTACAGTTAGACT 1255
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1189 AGCACTCGAGTTTGCGCTTGTGGGCATGTTGGTTCATATATTCTATGCTACAGTTAGACT 1248
Query 1256 ATCGGCGACCTATTCTATACTTTTTGCAGGGATTCTTGGTTTTGGGATAGCCGTGTGCCT 1315
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ATCGGCGACCTATTCTATACTCTTTGCAGGGATTCTTGGTTTTGGGATAGCCGTGTGCCT 1308
Query 1316 AAACTCGTTGTACCTTCATTATTTCGCTTGGCGTGTACGCATTGCAGAAAATTCAAGTCC 1375
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1309 AAACTCGTTGTACCTTCATTATTTCGCTTGGCGTGTACGCGTTGCACAAAATTCAAGTCC 1368
Query 1376 TGTATGAAATCTGTTTTCCTTGGTTTCTCTGTTCTTCCTTTGAGTTTGTATTATGGAAGA 1435
||||||||||||||||||||| ||||||| |||||||||||| || ||||||||| ||||
Sbjct 1369 TGTATGAAATCTGTTTTCCTTTGTTTCTC-GTTCTTCCTTTGTGTATGTATTATGAAAGA 1427
Query 1436 AGAAGTTGTTAGTGAAGAGATTCATAAGATCCAGCAGTTACCTGTAAAATGTAAATATGT 1495
||||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||
Sbjct 1428 AGAAGTTGTTAGTGAAGAGATTCATCAGCTTCAGCAGTTTCCTGTAAAATGTAAATATGT 1487
Query 1496 ACACACtt 1503
|||| |||
Sbjct 1488 ACACTCTT 1495
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1504 tttttCCCGAGCACGATGATGATTTGTGAAAGAGAAGA 1541
||||||| ||||||||||||||||||||||||||||||
Sbjct 1542 TTTTTCCGGAGCACGATGATGATTTGTGAAAGAGAAGA 1579
> AT5G18760.1 | Symbols: | RING/U-box superfamily protein | chr5:6258295-6260929
REVERSE LENGTH=1550
Length=1550
Score = 477 bits (258), Expect = 1e-133
Identities = 703/911 (77%), Gaps = 57/911 (6%)
Strand=Plus/Plus
Query 477 TCGCCTTATTGGAAAAGATGCTTATCGCTTCCTAATAG-ACATGCTGCAAAATTGTCTCC 535
|||||||| |||||||| || || || |||||| ||| | || |||| ||| ||||||
Sbjct 417 TCGCCTTACTGGAAAAGGTGTTTGTCACTTCCTTCTAGTA-ATTCTGCTAAACTGTCTCT 475
Query 536 GGTTGTATCTAC-A--CAAGTTTCAGCTGGGGTGCCTGGTG---AGCC---GCCTAATAA 586
|||||||||||| | | ||||| |||| ||||| | ||| |||| | |||||||
Sbjct 476 GGTTGTATCTACAACGCCTGTTTCCGCTGTGGTGCATAGTGAACAGCCTAAGTCTAATAA 535
Query 587 AGAT--TATCCAAG-GTC--CTT---G-TCCATGCCCGGAAGAAACAAAGTGATTGTGCG 637
|||| | | || | || || | ||| || || | | |||| ||||||||| ||
Sbjct 536 AGATGGTCTTCATGCATCTGTTTCAAGATCCTTGTCC--ATG-AACAGAGTGATTGTACG 592
Query 638 ATCCATATCTTTTGACAACCACAAAGCCCGTGTTTCCAGTGAAACAAGT-GCAGATCAAA 696
| | | ||||||||| || ||||| | |||| | |||| ||| | || |||||||
Sbjct 593 AGCTGTCTCTTTTGACGACAACAAAAATCACATTTCAAATGAAGCAAATGGC-GATCAAA 651
Query 697 TCTCTTCC-GTTCCTCCTGAAGAAACTGATGAAGAAATTCCCGAAGAAGAAGCCGTGTGC 755
|| | ||| |||||| | |||||||| || ||||||||||| ||||||||||| || |||
Sbjct 652 TCAC-TCCAGTTCCTGCAGAAGAAACAGAAGAAGAAATTCCTGAAGAAGAAGCAGTATGC 710
Query 756 AGGATCTGTCTGGATGTGTGCGAAGAGGGCAATACTTTGAAAATGGAGTGCAGCTGCAAA 815
||||| ||||| |||||||||||||| || || || |||||||||| ||||| ||||||
Sbjct 711 AGGATTTGTCTTGATGTGTGCGAAGAAGGTAACACACTGAAAATGGAATGCAGTTGCAAA 770
Query 816 GGTGATCTCAGACTTGTTCATGAAGC-GTGTGCCATGAAATGGTTTAGTACAAAGGGAAC 874
||||| |||||||||||||| | ||| |||||||| || |||||||||||||| |||||
Sbjct 771 GGTGACCTCAGACTTGTTCACG-AGCATTGTGCCATTAAGTGGTTTAGTACAAAAGGAAC 829
Query 875 AAGAACCTGTGACGTCTGTAGACAAGAAGTAAAGAACTTACCAGTTACATTGGTTCGTGT 934
| ||| ||| || || || ||||||||||| |||||||||||| | | | | |||||
Sbjct 830 ACGAATCTGCGATGTATGCAGACAAGAAGTCCGGAACTTACCAGTGATACTCCTCCGTGT 889
Query 935 GCCC-ACAAGTAATCAACCAAACAACAGACGTGATCGCGGTCAACCA-A-AT-ATGCCTT 990
||| |||| |||||||| | ||| ||||| || | | || | || | | | |
Sbjct 890 -CCCAACAATTAATCAACTTACCAATAGACGGGAACTCACTC-AGCAGAGTTCA-G-AGC 945
Query 991 CACAAACCATAAGTGCTT-GGCAAGAGTTTGTGGTGCTAGTTCTAATCAGCACAGTCTGC 1049
|||||| ||| |||| || ||||||||||||| ||||| || || |||||||| ||||||
Sbjct 946 CACAAAGCATCAGTG-TTGGGCAAGAGTTTGTAGTGCTTGTACTCATCAGCACCGTCTGC 1004
Query 1050 TACTTCTTCTTCCTCGAGCAATTACTGATTCGTGACTTGAA--CA-A-GCAAGCTATTTA 1105
|||||||||||||| || || |||||||||||||||||||| || | |||| |||||
Sbjct 1005 TACTTCTTCTTCCTTGAACATTTACTGATTCGTGACTTGAATTCACAGGCAA--TATTT- 1061
Query 1106 CATCGCGGCGCCATTTTCACTT-A-CGTTAGGC-CTCTTAGCATCCATTTTTGCCATTGT 1162
| || |||||||||||| || | | || || |||||||| || | ||||||| | |
Sbjct 1062 -GTTGCAGCGCCATTTTCA-TTCACCCTT--GCACTCTTAGCCTCAACTTTTGCCGTCAT 1117
Query 1163 CCTCGCTATCAGAGAATACATATGGACATACGCAGCACTCGAGTTTGCGCTTGTGGGCAT 1222
|||||| ||||||||||||||||||||||||||||| || |||||||| || |||| |||
Sbjct 1118 CCTCGCGATCAGAGAATACATATGGACATACGCAGCTCTTGAGTTTGCACTAGTGG-CAT 1176
Query 1223 -G-TTGGTTCATATATTATATGCTACAGTTAGACTATCGGCGACCTATTCTATACTTTTT 1280
| ||| ||||| |||||||||||||| || | | ||| | |||| | || ||||||
Sbjct 1177 TGCTTG-TTCATCTATTATATGCTACACTTCGTGTGCCGGTTATCTATGCAATGCTTTTT 1235
Query 1281 GCAGGGATTCTTGGTTTTGGGATAGCCGTGTGCCTAAACTCGTTGTACCTTCATTATTTC 1340
|||||||| || ||||| ||||| || ||||| |||||| ||||| | || ||||| |
Sbjct 1236 GCAGGGATACTGGGTTTCGGGATGGCAATGTGCTTAAACTTGTTGTGCATTTGTTATTCC 1295
Query 1341 GCTTGGCGTGT 1351
|| ||| |||
Sbjct 1296 TCTCGGCCTGT 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76053825675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5