BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477936
Length=2422
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06340.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 3410 0.0
> AT3G06340.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr3:1920207-1923311 REVERSE LENGTH=2588
Length=2588
Score = 3410 bits (1846), Expect = 0.0
Identities = 2274/2472 (92%), Gaps = 63/2472 (3%)
Strand=Plus/Plus
Query 1 GGGTTGGGGGTTCTATGATACTTGTGCTGGATTGATAATGAGTATCAACAGAGATGAGGC 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 130 GGGTTGGGGGTTCTATGATACTTGTACTGGATTGATAATGAGTATCAACAGAGATGAGGC 189
Query 61 TCTTAGAGCCAAAGAT-TTAGCGGAGGGTTTGATGAAAAAGACTGATTTTACTGCTGCTC 119
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 190 TCTTAGAGCCAAAGATCTT-GCGGAGGGTTTGATGAAAAAGACCGATTTTACTGCTGCTC 248
Query 120 GTAAGCTTGCTTTGAAGGCTCAAAAAATGGACTCCAGCTTGGAGAACATATCTCGTATGA 179
|||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 249 GTAAGCTTGCAATGAAGGCTCAAAAAATGGATTCCAGCCTGGAGAACATATCTCGTATGA 308
Query 180 TAATGGTCTGTGATGTGCACTGTGCTGCAACACAGAAGCTGTTCGGAACTGAGATGGATT 239
||||||| |||||||| |||||||||||||| ||||| |||| ||||||||||||||||
Sbjct 309 TAATGGTTTGTGATGTTCACTGTGCTGCAACGGAGAAGTTGTTTGGAACTGAGATGGATT 368
Query 240 GGTACGGTATACTTCAGGTTGAGCAGATTGCTAATGATATTATCATCAAGAAACAGTACA 299
|||| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 369 GGTATGGTATTCTTCAGGTTGAGCAGATCGCTAATGATGTTATCATCAAGAAACAGTACA 428
Query 300 AGCGGCTTGCGCTTCTTCTCCACCCTGATAAAAATAAGCTTCCGGGTGCTGAATCTGCTT 359
|| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 429 AGAGGCTTGCGCTTCTTCTCCACCCTGACAAAAATAAGCTCCCCGGTGCTGAATCTGCTT 488
Query 360 TTAAATTGATTGGTGAAGCCCAGAGGATTCTTTTGGACAAAGAGAAAAGGATGCTTCATG 419
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 489 TTAAATTGATTGGTGAAGCCCAGAGGATTCTTTTGGACAGAGAGAAAAGGACGCTTCATG 548
Query 420 ACATTAAACGCAAAACTTTGAGAAAGCCTGCACCTGCACCGCCATATAAAACCCAACAGA 479
||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||
Sbjct 549 ACAATAAACGCAAAACTTGGAGAAAGCCTGCA---GCACCGCCATATAAAGCCCAACAGA 605
Query 480 TGCCGAATTATCACACACAACCTGTTTTTCGGGCAAGCGTCAGTACGAGGAACATCTTCA 539
||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 606 TGCCGAATTATCACACACAACCTCATTTTCGGGCAAGCGTCAATACGAGAAACATCTTCA 665
Query 540 CTGAATTGAGACCTGAAAACAGGCATCCTTACCAGAAAGCTCAAGCCCAACCAGCTGCTT 599
|||| |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 666 CTGAGTTGAGACCCGAAATCAGGCATCCTTTCCAGAAAGCTCAAGCCCAACCAGCTGCTT 725
Query 600 TCAGTCACCTTACAACCTTTTGGACCACTTGT-CCATTCTGCCGGGCT-AGGTATGAATA 657
||| |||||||| ||||||| ||||| ||||| | |||||||||| | |||||||||||
Sbjct 726 TCACTCACCTTAAAACCTTTGGGACCTCTTGTGTC-TTCTGCCGGG-TGAGGTATGAATA 783
Query 658 TCAACGGGCACATGTCAACAAGGAAGTCACTTGTCG-GCCTTGTATTAAACGGTTCACTG 716
| | |||||||||||||||||||||||||||||| | | |||||| ||||| |||||||
Sbjct 784 TGATCGGGCACATGTCAACAAGGAAGTCACTTGT-GAGACTTGTAAAAAACGTTTCACTG 842
Query 717 CTTTTGAAGAACCTTTGCAGAGTGCACCACCGGCGAAAGGGCCATGTCAGACTACTTATT 776
|||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 843 CTTTTGAAGAACCTTTGCAGAGTGCACCACAGGCGAAAGGCCCATCTCAGACTACTTATT 902
Query 777 CCTTCCCACAACAGAACAAATTTCCAGACCAAAGGGCTTGCAGTGAACCACACAAGCGTT 836
||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 903 GCTTCCCACAGCAGAGCAAATTCCCAGACCAAAGGGCTTGCAGTGAACCACACAAGCGTC 962
Query 837 CAGAGAATCTTCCTACTGTTTCCTCTAGCAAGGCGAGTTTCCCTATGCCGGGTTCTACTG 896
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAGAAAATCCTCCCACTGTTTCCTCTAGCAAGGCGAGTTTCCCTATGCCGGGTTCTACTG 1022
Query 897 CAAAA-ATCAATGGGAAGAGGAAGAGAAAGAATATGGTTGAATGTAGTGAAAGCAGCTCT 955
||||| | |||||||||||||||||| |||||| ||| ||||||||||| || ||||||
Sbjct 1023 CAAAACA-CAATGGGAAGAGGAAGAGGAAGAATGTGGCTGAATGTAGTG-AA--AGCTCT 1078
Query 956 GACAGTGAAAGTAGCAGTGAGTCAG-A-A-GATG-------TG--ACTATGGCAGCACAA 1003
||||||||||||||||||||||||| | | |||| || |||| ||||||||||
Sbjct 1079 GACAGTGAAAGTAGCAGTGAGTCAGAAGATGATGTAAATAATGATACTACGGCAGCACAA 1138
Query 1004 GATTTGGGGGCCAATGAAGGAGAGCAGCCTCGGAGGTCAGTCCGTAGCAAGCAGAAGGTT 1063
|||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GATTCAGGGTCCAATGGAGGAGAGCAGCCTCGGAGGTCAGTCCGTAGCAAGCAGAAGGTT 1198
Query 1064 TCCTATAATGAGAATTTGAGCGATGATGATGTAGACTTAGTCAACCACAATGGGAAAGGG 1123
|||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct 1199 TCCTATAATGAGAATTTGAGCGATGATGATGTCGACTTAGTCAACGACAATGGGGAAGGG 1258
Query 1124 TCC-GGAAAACACATAGATACTGAAAGGGAAGAAGAGACAAAGGAGGAAAAGCAGACAAA 1182
||| |||||| |||| ||||||||||||||| |||| ||| |||| ||||||||||||||
Sbjct 1259 TCCGGGAAAA-ACATTGATACTGAAAGGGAAAAAGAAACAGAGGAAGAAAAGCAGACAAA 1317
Query 1183 TGAGGATCATAGCTCTACTGAAAGCATAGACATGAAGGGGAAGATAAAAGTTGACCAGGT 1242
|||| |||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 1318 TGAGAATCATAGCTCCACTGAAAGCATAGACATGAATGGGAAGATAGAAGTTGATCAGGT 1377
Query 1243 GGTAACCCCTTCTGGTGCGAGTGATTCAGAGGAAGATTTAAGTTCAGGGAGTGCAGAAAA 1302
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GGAAACCCCTTCTGGTGCGAGTGATTCAGAGGAAGATTTAAGTTCAGGGAGTGCAGAAAA 1437
Query 1303 ACCAAATTTGATCAACTATGATGATCCTGATTTCAATGAATTCGATAAGTTGAGGGAAAA 1362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1438 ACCAAATTTGATCAACTATGATGATCCTGATTTCAATGACTTCGATAAGTTGAGGGAGAA 1497
Query 1363 AAGCTGTTTTCAAGCTGGCCAGATCTGGGCTGTGTATGATGAAGAAGAGGGGATGCCTAG 1422
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1498 AAGCTGTTTTCAAGCTGGCCAGATCTGGGCTGTGTATGATGAAGAAGAGGGAATGCCTAG 1557
Query 1423 ATTTTATGCTCTCATAAGAAAAGTTACAACTCCGGATTTCATGCTTAAGTACGTATGGTT 1482
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1558 ATTTTATGCTCTCATAAAAAAAGTTACAACTCCGGATTTCATGCTTAGGTACGTCTGGTT 1617
Query 1483 AGAGGTAGATCAAGATCAAGAGAATGAAACACCAAAGTTGCCTGTCTCTGTTGGTAAGTT 1542
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1618 CGAGGTAGACCAAGATCAAGAGAATGAAACACCAAATTTGCCCGTCTCTGTTGGTAAGTT 1677
Query 1543 TAAAGTTGGGAATATGGAGGAGACGAATGAGTGTTCCATTTTCTCTCGTTTGGTCTACAG 1602
| |||||||||||| |||||||||||| ||||||||||||||||| ||| ||||||||
Sbjct 1678 TGTAGTTGGGAATATTGAGGAGACGAATTTGTGTTCCATTTTCTCTCATTTTGTCTACAG 1737
Query 1603 CACAACAAGAATCAGGGGTCGCAAGTTTACGGTATTCCCAAAGAAAGGAGAAACATGGGC 1662
|||||||| ||||||| |||||||||||| || ||||||||||||||||||| ||||||
Sbjct 1738 CACAACAAAAATCAGGACTCGCAAGTTTACTGTTTTCCCAAAGAAAGGAGAAATATGGGC 1797
Query 1663 CCTTTTCAAGAACTGGGACATCAACTGCTCCGCTGACTCAGTTTCTCCTATTAAGTACGA 1722
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1798 CCTTTTCAAGAACTGGGACATCAACTGCTCCGCTGACTCAGTTTCTCCTATGAAGTACGA 1857
Query 1723 GTATGAATTTGTTGAGATCTTGTCTGATCATGCAGAGGGAGCCACGGTGTCAGTTGGGTT 1782
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 1858 GTATGAATTTGTTGAGATCCTGTCTGACCATGCAGAGGGAGCCACGGTATCAGTTGGGTT 1917
Query 1783 CTTGTCTAAAGTGAAAGGCTTTAATTGTGTTTTCTGTCCGATGCCGAAGGATGAGTCAAA 1842
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1918 CTTGTCTAAAGTGCAAGGCTTTAACTGTGTTTTCTGTCCGATGCCGAAGGATGAGTCAAA 1977
Query 1843 CACTTGTGAGATTCCACCTCATGAATTCTGTAGATTCTCACATAGCATTCCGTCATTCAG 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 CACTTGTGAGATTCCACCTCATGAATTCTGTAGATTCTCACATAGCATTCCGTCATTCAG 2037
Query 1903 ATTAACAGGAACAGAAGGAAGAGGCGTAACCAAGGGTTGGTATGAGCTTGACCCAGCTGC 1962
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2038 ATTAACAGGAACAGAAGGAAGAGGCATAACCAAGGGTTGGTATGAGCTTGACCCAGCTGC 2097
Query 1963 TTTACCAGTCTCCGTCTCTCAAAATCTATCAGGAGAAGAAGCAGCTCAAGACCGAGACCA 2022
||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2098 TTTGCCAGCCTCCGTCTCTCAAAATCTATCAGGAGAAGAAGCTGCTCAAGACCGAGACCG 2157
Query 2023 TCAATCTCCACCTTCAGGATCTGCCTCTTGATATTATCTCAGTCAGAGGCTCTGTTGTGT 2082
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2158 CCAGTCTCCACCTTCAGGATCTGCCTCTTGATATTATCTCAGTCAGAGGCTCTTTTGTGA 2217
Query 2083 CCATGACTTGCTCAAATC-AAAGTTCTTGGAGCTCGTTT-ATTTTGTTCAAGCGTACAGG 2140
|||||| |||||||| | ||| |||||||||||||||| |||||||||| |||||||||
Sbjct 2218 CCATGAATTGCTCAACGCGAAA-TTCTTGGAGCTCGTTTTATTTTGTTCAGGCGTACAGG 2276
Query 2141 TTTACAGACAAGAGAAACCAAAGCTCCTCAGAGGCTTCGTT-AAGCTCGATCCCTCTCTG 2199
||||||||||||||||||||||||||||||||||| ||||| |||| |||| |||| |||
Sbjct 2277 TTTACAGACAAGAGAAACCAAAGCTCCTCAGAGGCATCGTTTAAGCCCGATACCTCGCTG 2336
Query 2200 TTGTCTTGTGACATACTCGAGTCATGATACTGGTTGGAtttttttttGTTATATGTCT-- 2257
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 2337 TTGTCTTGTGACATACTCGAGTCATGATTCTGGTGGGAATTTTTTTTGTTATATGTCTAG 2396
Query 2258 -T-TT---T---------------AGGTTCACTCAGACTTGAAACTTAACCAGTATTTGT 2297
| || | |||||| |||||||||||||||||||||||||||||
Sbjct 2397 CTCTTACGTTTCTGTTTTTGTTTTAGGTTCTCTCAGACTTGAAACTTAACCAGTATTTGT 2456
Query 2298 CTCAATACTTCATTGTTGCTAGAGTAAGAAACTGTTGAATGAAGTGGTGAAAACCCTTTT 2357
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2457 CTAAATACTTCATTGTTGCTAGAGTAAGAAACTGTTGAAACAAGTGGTGAAAACCCTTTT 2516
Query 2358 TGGCCATGTTGTGCTTGTACCATCCATTTTTCACTTGTAA-----AATA--GCATCAGTT 2410
||||||| || | ||||||| ||||||| ||||||||||| |||| |||||||||
Sbjct 2517 TGGCCATATTCTACTTGTACTATCCATTGTTCACTTGTAAGTTGTAATATAGCATCAGTT 2576
Query 2411 TCGATTTCTGTT 2422
||||||||||||
Sbjct 2577 TCGATTTCTGTT 2588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120280505820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5