BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477938
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06350.1 | Symbols: EMB3004, MEE32 | dehydroquinate dehydrat... 2915 0.0
> AT3G06350.1 | Symbols: EMB3004, MEE32 | dehydroquinate dehydratase,
putative / shikimate dehydrogenase, putative | chr3:1924310-1927759
REVERSE LENGTH=2096
Length=2096
Score = 2915 bits (1578), Expect = 0.0
Identities = 1782/1881 (95%), Gaps = 12/1881 (1%)
Strand=Plus/Plus
Query 23 TCTCAATGGCAGCTTCTTCAACTAATGCTCGTCTCACCAACCCTCCTCATGTACTCTCCA 82
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 54 TCTCAATGGCAGCTTCTTCAACTAATGCTCGTCTCACCAACCCTCCTCGTCTACTCTCCA 113
Query 83 AACCCCGACTCTCACCAACCTCCGTCGTGAATCTCCGTTTTCCAGCCGCCGATTTC-CCT 141
|||||||||| ||||| |||||||||| ||||||||||||||||||||||||||| ||
Sbjct 114 AACCCCGACTTTCACCTACCTCCGTCGCCAATCTCCGTTTTCCAGCCGCCGATTTCTCC- 172
Query 142 ATC-CGCTTATCTGCCGGTTCTTCGTTCCCGCAACTAAGGAGTGTGCCGTTTCCGGTGGT 200
| | ||||| | ||||| |||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 173 A-CTCGCTTCTTTGCCGATTCTTCGTCCCCGCGGCTAAGGAGTGTACCGTTTCCGGTGGT 231
Query 201 ATTTCCCGATCGAAGGCGCCGGCGAAGCATGGAACGTAGCAATGTCTATGTGGCTTCAAA 260
|||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 232 ATTTTCCGATCAAAGGCGCCGGCGAAGCATGGAACCTAGCAATGTCTATGTGGCTTCAAA 291
Query 261 TTCCACGGAAATGGAGATTGGAAGTCAAGATATTGTGAAGAATCCGAGCTTGATCTGTGC 320
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 292 TTCCACGGAAATGGAGATCGGAAGTCATGATATCGTGAAGAATCCGAGCTTGATCTGTGC 351
Query 321 TCCAGTGATGGCGGATTCAATTGACAAGATGGTGATTGAAACG-TTCAAAGCCCATGAAT 379
||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 352 TCCAGTGATGGCGGATTCAATAGACAAGATGGTGATTGAAACGAGT-AAAGCCCATGAAT 410
Query 380 TGGGTGCTGACTTGGTTGAAATTCGATTAGATTGGCTAAAGGATTTCAACCCTCTTGAGG 439
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 411 TGGGTGCAGACTTGGTTGAAATTCGATTAGATTGGCTAAAGGACTTCAATCCTCTTGAGG 470
Query 440 ATCTCAAAACCATTATTAAGAAATCTCCTCTGCCCACTCTCTTCACCTACAGACCAAAAT 499
|||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 471 ATCTAAAAACCATTATTAAGAAATCTCCTCTACCCACTTTATTCACCTACAGACCAAAAT 530
Query 500 GGGAAGGTGGTCAATATGAAGGTGATGAAAACGAGAGACAGGATGTGCTTCGTCTGGCCA 559
||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 531 GGGAAGGTGGTCAGTATGAAGGTGATGAAAATGAGAGACGGGATGTGCTTCGTCTGGCCA 590
Query 560 TGGAGTTGGGAGCTGATTACATTGATGTTGAACTTCAGGTGGCAAGTGAGTTCATCAAAT 619
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGGAGTTGGGAGCTGATTATATTGATGTTGAACTTCAGGTGGCAAGTGAGTTCATCAAAT 650
Query 620 CTATTGACGGAAAGAAGCCT-GAAAGTTTCAGAGTAATTGTTTCATCGCACAACTATAAG 678
|||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||
Sbjct 651 CTATTGACGGAAAGAAGCCTGGAAAG-TTCAAAGTAATTGTTTCATCGCACAACTATCAG 709
Query 679 AATACTCCTTCTGTTGAGGATCTCAATGACCTTGTTGCAAGAATACAACTGACTGGAGCC 738
||||| |||||||||||||| || ||| |||||||||||||||||||| ||||||||||
Sbjct 710 AATACCCCTTCTGTTGAGGACCTTGATGGCCTTGTTGCAAGAATACAACAGACTGGAGCC 769
Query 739 GACATAGTGAAGATTGCTACTACTGCTGTGGACGTTGCAGATGTTGCTCGCATGTTCCAT 798
||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 770 GACATTGTTAAGATTGCTACTACTGCTGTGGACATTGCAGATGTTGCTCGCATGTTCCAT 829
Query 799 ATAACCTCAAATGCTCAAGTTCCTACAATTGGACTTGTTATGGGCGAGCGAGGTTTAATG 858
||||||||||| ||||||||||| |||||||||||||||||||| || ||||||| |||
Sbjct 830 ATAACCTCAAAAGCTCAAGTTCCCACAATTGGACTTGTTATGGGTGAAAGAGGTTTGATG 889
Query 859 TCTCGGATTCTTTGTTCGAAATTTGGTGGTTATTTGACCTTTGGCACCTTAGATTCTGGG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 890 TCTCGGATTCTTTGTTCGAAATTTGGTGGTTATTTGACCTTTGGCACCTTAGATTCTAGT 949
Query 919 AAAGTTTCTGCACCAGGTCAACCAACGATCAAGGATCTGTTGGAGCTTTACAACTTTAGA 978
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 950 AAAGTTTCTGCGCCAGGTCAACCAACGATCAAGGATCTGTTGGATCTTTACAACTTTAGA 1009
Query 979 AGAATTGGTCCTGACACAAAGGTGTATGGAATTATTGGCAAGCCTGTCAGTCACAGCAAA 1038
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1010 AGAATTGGTCCTGACACAAAGGTATATGGAATTATTGGCAAGCCTGTCAGCCACAGCAAA 1069
Query 1039 TCACCTATTGTTCACAATCAAGCTTTCAAATCAGTTGATTTTAATGGAGTATATGTCCAC 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TCACCTATTGTTCACAATCAAGCTTTCAAATCAGTTGATTTTAATGGAGTATATGTCCAC 1129
Query 1099 CTGTTAGTTGATAATCTTGCAAGCTTTCTTCAAGCATACTCATCCTCTGATTTCGCTGGA 1158
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CTGTTAGTTGATAATCTTGTAAGCTTTCTTCAAGCATACTCATCCTCTGATTTCGCTGGA 1189
Query 1159 TTCAGCTGCACAATTCCTCACAAAGAAGCTGCATTGCAATGTTGTGATGAGGTTGATCCA 1218
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1190 TTCAGCTGTACAATTCCGCACAAAGAAGCTGCATTGCAATGTTGTGATGAAGTTGATCCA 1249
Query 1219 TTGGCAAAGTCTATAGGAGCTGTGAACACTATACTAAGGAGAAAAAGCGACGGAAAGTTG 1278
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1250 TTGGCAAAGTCTATAGGAGCTGTGAACACTATACTAAGGAGAAAAAGTGACGGAAAGTTG 1309
Query 1279 TTGGGTTATAACACAGATTGTATTGGTTCCATATCTGCTATTGAGGATGGCCTACGAAGA 1338
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1310 TTGGGTTACAACACAGATTGTATTGGTTCCATTTCTGCTATTGAGGATGGCCTACGAAGT 1369
Query 1339 TCAGGTGATCCAAGCAGTGGACCTTCTTCTTCTTCGCCATTAGCCGGTAAAACAGTGGTG 1398
||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1370 TCAGGTGATCCAAGCAGTGTACCTTCTTCTTCTTCGCCATTGGCCAGTAAAACAGTGGTG 1429
Query 1399 GTTATTGGTGCTGGTGGAGCTGGCAAGGCACTTGCTTATGGTGCAAAAGAAAAGGGGGCC 1458
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1430 GTTATTGGTGCTGGTGGAGCAGGCAAGGCTCTTGCTTATGGTGCAAAAGAAAAGGGGGCC 1489
Query 1459 AAAGTTGTAATTGCTAA-CAGAACTTACGAACGAGCACTAGAACTCGCGGAAGCAATCGG 1517
||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| ||
Sbjct 1490 AAAGTTGTAATTGCTAATC-GAACTTACGAACGAGCACTAGAACTCGCAGAAGCAATAGG 1548
Query 1518 AGGGAGAGCGTTATCTCTCACAGATTTAGACAACTTTCACCCAGAAGATGGCATGGTTTT 1577
||| | |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1549 AGGCAAAGCGTTATCTCTGACAGATTTAGATAACTATCACCCAGAAGATGGCATGGTTTT 1608
Query 1578 GGCCAACACCACATCTATGGGTATGCAACCAAATGTTGACGAGACTCCAATTTCTAAGCA 1637
||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1609 GGCAAACACAACATCTATGGGTATGCAACCAAATGTTGAGGAGACTCCAATTTCTAAGGA 1668
Query 1638 TGCATTGAAGCACTACGCACTGGTCTTTGATGCGGTCTACACTCCGAGAATCACCCGACT 1697
||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1669 TGCATTGAAGCACTATGCACTGGTCTTTGATGCGGTATACACTCCGAGAATCACCAGACT 1728
Query 1698 GTTGAGGGAAGCAGAAGAAAGTGGAGCCATAACTGTCTCAGGCTCAGAGATGTTTGTCAG 1757
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1729 GTTGAGGGAAGCAGAAGAAAGTGGAGCCATAACTGTCTCAGGGTCAGAGATGTTTGTCAG 1788
Query 1758 GCAGGCTTATGAGCAGTTTGAGATTTTCACCGGTTTACCCGCTCCAAAGGAACTCTACTG 1817
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1789 GCAGGCTTACGAGCAGTTTGAGATCTTCACCGGTTTACCCGCTCCAAAGGAACTCTACTG 1848
Query 1818 GCAAATAATGTCAAAGTACTGAGACATAGCCTAAgtgtgtgtgtgtgtACTTCCATGAAA 1877
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1849 GCAAATAATGTCAAAGTACTGAGACATAGCTTAAGTGTGTGTGTGTGTACTTCCATGAAA 1908
Query 1878 AGTCA--GATTCAATAAAGCT 1896
|||| ||||||||||||||
Sbjct 1909 AGTCGTCGATTCAATAAAGCT 1929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95079832230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5