BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477939
Length=451
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06360.1 | Symbols: AGP27, ATAGP27 | arabinogalactan protein... 684 0.0
> AT3G06360.1 | Symbols: AGP27, ATAGP27 | arabinogalactan protein
27 | chr3:1928902-1929446 FORWARD LENGTH=545
Length=545
Score = 684 bits (370), Expect = 0.0
Identities = 432/460 (94%), Gaps = 12/460 (3%)
Strand=Plus/Plus
Query 1 CTTTGATTTGTTCATCATTACAGTAACC-AAAAAGATGGC-T--TC---ATTGCTAACAC 53
|||||||||||||||||||||||||||| ||||||||||| | || |||||||||||
Sbjct 40 CTTTGATTTGTTCATCATTACAGTAACCAAAAAAGATGGCTTCATCTATATTGCTAACAC 99
Query 54 TCATCACCTTCATCTTTCTCTCCTCACTTTCTCTCTCTTCGCCGACGACAAACACAATCC 113
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 100 TCATCACCTTCATCTTTCTCTCCTCACTTTCTCTCTCTTCGCCGACGACAAATACAATCC 159
Query 114 CATCTTCCCCAACAATCTCTCCCTTTGAAGAACAGATCTCGCCGGAGATCGCTCCTCTCC 173
||||||| | |||||||||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 160 CATCTTCGCAAACAATCTCTCCCTCTGAAGAAAAGATCTCACCGGAGATCGCTCCTCTCC 219
Query 174 TCCCTTCACCCGCCGTCTCCTCCAGTACTCAAACCATCCCTTCTTCTTCAACACTTCCCG 233
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 220 TCCCTTCACCCGCCGTCTCCTCCA---CTCAAACCATCCCTTCTTCTTCAACACTTCCTG 276
Query 234 AACCAGAAAACGACGACGTTTTTGCAGATCCTGATCCCGCCTTCGCTCCCTCCGCTTCTC 293
||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 277 AACCAGAAAACGACGACGTTTCCGCAGATCCTGATCCCGCCTTCGCTCCATCGGCTTCTC 336
Query 294 CTCCGGCTTCATCTCTTGCTACTCTGTCTTCTCAAGCCCCCGGAGTTTTCGTCTACTTTG 353
|||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct 337 CTCCGGCTTCATCTCTTGCTTCTCTGTCTTCTCAAGCTCCCGGAGTTTTCATCTACTTTG 396
Query 354 TCTTCGCCGCCCTCTCTTGTTTCTCGCTCCGGCTTCTTGCCGTTTCAGCTATATAGGTCA 413
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TCTTCGCCGCCGTCTATTGTTTCTCGCTCCGGCTTCTTGCCGTTTCAGCTATATAGGTCA 456
Query 414 TTCATAT-TTT-AGACCACGTACGTCATTATTTTCATGAG 451
||||||| ||| ||||||||||||||||||||||||||||
Sbjct 457 TTCATATATTTTAGACCACGTACGTCATTATTTTCATGAG 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21464328823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5