BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477941
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06380.1 | Symbols: ATTLP9, TLP9 | tubby-like protein 9 | ch... 2050 0.0
> AT3G06380.1 | Symbols: ATTLP9, TLP9 | tubby-like protein 9 |
chr3:1936124-1938221 FORWARD LENGTH=1596
Length=1596
Score = 2050 bits (1110), Expect = 0.0
Identities = 1410/1545 (91%), Gaps = 60/1545 (4%)
Strand=Plus/Plus
Query 1 AAGCGGTAAAAGCGTTT-AG-A-A-GAAGAAGAAAAAGAAAACGCCTCAAAATCACCATT 56
||||||||||||||||| || | | ||||||||||||| ||||||||| |||||||||||
Sbjct 52 AAGCGGTAAAAGCGTTTAAGAAGATGAAGAAGAAAAAGGAAACGCCTCCAAATCACCATT 111
Query 57 ATTGTCCGAATCTTCTTCGCGTCTCTCAACAACACCACTTCTCCTA------TCTT---- 106
|||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 112 ATTGTCCGAATCTTCTTCGCGTCTCTCACCAACACCACTTCTCCTACCTTCTTCTTCACA 171
Query 107 -C------TTCT-TC-------ATTCCTCAAACCCAGATCATGTTTTCATCATCAATAAA 151
| |||| || |||| |||||||||||||||||||||||||||||| |
Sbjct 172 CCAAATGATTCTCTCGTATAATATTCATCAAACCCAGATCATGTTTTCATCATCAATCAT 231
Query 152 CTCTTAAAC-CCT-T-TAGATCTCACCGCATGACGATCCGAAGTTTGA-TCCAGGAAATG 207
||||||||| ||| | ||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 232 CTCTTAAACTCCTCTATAGATCTCACCGCATGACGTTCCGAAGTTT-ACTCCAGGAAATG 290
Query 208 CGGTCTAGGCCACACCGTGTGGTTCACGACGCCGCCTCAACCGCTAATAGTTCAGACCCT 267
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 291 CGGTCTAGGCCACACCGTGTAGTTCACGCCGCCGCCTCAACCGCTAATAGTTCAGACCCT 350
Query 268 TTCAGCTGGTCGGAGCTCCCGGAGGAGCTGCTGAGAGAGATTCTGATTAGGGTTGAGACG 327
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 351 TTCAGCTGGTCGGAGCTCCCGGAGGAGCTGCTTAGAGAAATCCTGATTAGGGTTGAGACT 410
Query 328 GTTGACGGCGGTGATTGGCCCTCGCGGCGAAACGTGGTGGCTTGTGCCGGCGTTTGCCGT 387
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 411 GTTGACGGCGGCGATTGGCCGTCGCGGCGAAACGTGGTGGCTTGTGCCGGCGTTTGTCGT 470
Query 388 AGCTGGCGGATTCTCACGAAGGAGATTGTAGCTGTTCCTCAATTCTCCTCTAAATTGACT 447
|||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 471 AGCTGGAGGATTCTCACCAAGGAGATTGTAGCTGTTCCTGAATTCTCCTCTAAATTGACT 530
Query 448 TTCCCCAGT-TCCCTCAAGCAGCCTGGTCCAAGGGATTCTCTAGTTCAATGCTTTATAAA 506
||||| | | |||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 531 TTCCCTA-TCTCCCTCAAGCAGTCTGGTCCAAGAGATTCTCTAGTTCAATGCTTTATAAA 589
Query 507 ACGTAATCGAAATACTCAATCGTATCATCTCTATCTCGGGTTAACTACCTCTTTGACGGA 566
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 590 ACGTAATCGAAATACTCAATCGTATCATCTCTATCTCGGATTAACTACCTCTTTGACGGA 649
Query 567 TAACGGGAAGTTTCTTCTTGCTGCTTCTAAGCTGAAGCGCGCAACTTGTACTGATTACAT 626
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 650 TAACGGGAAGTTTCTTCTTGCTGCTTCTAAGCTGAAGCGCGCAACTTGCACTGATTACAT 709
Query 627 CATCTCTTTGCGTTCAGACGATATCTCAAAGAGAAGCAACGCGTATCTGGGGAGAATGAG 686
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 710 CATCTCTTTGCGTTCAGACGATATCTCAAAGAGAAGCAACGCGTATCTTGGGAGAATGAG 769
Query 687 ATCGAACTTCCTTGGAACAAAATTCACGGTCTTCGATGGTAATCTGATGCCACATACCGG 746
||||||||||||||||||||||||||||||||| |||||| | | | || |||||
Sbjct 770 ATCGAACTTCCTTGGAACAAAATTCACGGTCTTTGATGGT-A---G-T----CAGACCGG 820
Query 747 AGCAGCGAAAATGCAAAAGAGCCGCTCTTCTAATTTCATCAAAGTTTCAACTAAAGTTCC 806
||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 821 AGCAGCGAAGATGCAGAAGAGCCGCTCTTCTAATTTCATCAAAGTTTCACCTAGAGTTCC 880
Query 807 TCAGGGAAGTTACCCCATCGCTCACATTTCATACGAGTTAAACGTCTTAGGCTCTAGGGG 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 881 TCAGGGAAGTTACCCCATCGCTCACATTTCATACGAGTTAAACGTCTTAGGCTCTCGGGG 940
Query 867 ACCGAGGAGAATGTGTTGCACT-ATGGACACAATACCTATGAGCGTAGTGGAGTAC-CGA 924
|||||| |||||| |||||| | ||||| ||||||||||||||| | ||||||| | |||
Sbjct 941 ACCGAGAAGAATGCGTTGCA-TCATGGATACAATACCTATGAGCATCGTGGAGT-CGCGA 998
Query 925 -G-G-AGTAGCTTCAACATCCATACA-CTCCTTTTCCACTCAGTCATCACC-GTTCTTTA 979
| | ||||||||||||||||||| | ||| ||||||| || ||||||||| | ||||||
Sbjct 999 GGAGTAGTAGCTTCAACATCCATA-AGCTCTTTTTCCAGTCGGTCATCACCAG-TCTTTA 1056
Query 980 GGTCTCACTCAAAACCGA-TGCGCAGCAATAGTGCATCTTGTAGCGACTCAGGAAACAAC 1038
|||||||||||||||| | ||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1057 GGTCTCACTCAAAACC-ATTGCGCAGTAATAGTGCATCATGTAGCGACTCAGGCAACAAC 1115
Query 1039 CTGAGAGACCCACCATTGGTGCTGAGCAAC-AAGACTCCACGATGGCATGAGCAGCTACG 1097
||| |||| ||||||||||||||||||||| ||| ||||||| |||||||||||| ||||
Sbjct 1116 CTGGGAGATCCACCATTGGTGCTGAGCAACAAAG-CTCCACGGTGGCATGAGCAGTTACG 1174
Query 1098 ATGCTGGTGCTTAAATTTCCATGGTCGAGTCACAGTGGCTTCGGTTAAGAACTTTCAGCT 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 TTGCTGGTGCTTAAATTTCCATGGTCGAGTCACAGTGGCTTCGGTTAAGAACTTTCAGCT 1234
Query 1158 TGTGGCAGTCAGCGACTGTGAAACAGGGCTGCCATCTGAGAGGATCATACTTCAGTTTGG 1217
||||||||| || ||||||||| |||||| | ||||||||||||||||||| ||||||||
Sbjct 1235 TGTGGCAGTTAGTGACTGTGAAGCAGGGCAGACATCTGAGAGGATCATACTCCAGTTTGG 1294
Query 1218 TAAAGTTGGGAAGGACATGTTCACCATGGATTATGGGTATCCGATTTCTGCATTTCAAGC 1277
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1295 GAAAGTTGGGAAGGACATGTTTACCATGGATTATGGATATCCGATTTCTGCGTTTCAAGC 1354
Query 1278 GTTTGCAATCTGCCTGAGCAGTTTTGAAACCAGAATTGCCTGTGAATGATGAAGAGACTA 1337
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1355 GTTTGCTATCTGCCTGAGCAGTTTTGAAACCAGAATTGCCTGTGAATAATGAAGAGACTA 1414
Query 1338 ACCTTAAATCACCTCCATGTACTTGTTGTGGTCATCTGTAGATGGTGAAATATTTGTCCA 1397
|||||||||||||||| ||| || ||||| || ||||||||||||| | || |||||||
Sbjct 1415 ACCTTAAATCACCTCCGTGTGCTCGTTGTTGTGGTCTGTAGATGGTGTAGTACTTGTCCA 1474
Query 1398 AAATCTCAGGAACGTTAATAGCTTTCTCTGGATTCTTCCTGACAATTTAAATCTATATGT 1457
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||
Sbjct 1475 AAATCTCAGGAACGTTAATAGCTTTCTCTGGATTCTTTCTGACAATTCAAATCTATCTGT 1534
Query 1458 TGTAtttttttGTCTTTCATGCCAAGAAGCTTACCAGAAATAGGC 1502
||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct 1535 TGTATTTATTTGTCTTTCATGCAAAGAAGCGTACCAGAAATAGGC 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74096004420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5